Wall clock time and date at job start Sat Apr 11 2020 06:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47146 * 2 1 4 4 C 1.32999 * 119.99567 * 118.52440 * 3 2 1 5 5 C 1.50696 * 120.00118 * 354.32025 * 4 3 2 6 6 C 1.47094 * 119.99423 * 174.32516 * 4 3 2 7 7 O 1.21613 * 120.00768 * 7.24933 * 6 4 3 8 8 N 1.34783 * 119.99821 * 187.24612 * 6 4 3 9 9 C 1.46505 * 119.99649 * 6.90397 * 8 6 4 10 10 C 1.46501 * 120.00272 * 186.90302 * 8 6 4 11 11 C 1.53783 * 113.61395 * 240.00039 * 10 8 6 12 12 C 1.53772 * 87.08040 * 220.01493 * 11 10 8 13 13 N 1.46500 * 113.62023 * 270.80150 * 12 11 10 14 14 C 1.34769 * 119.99968 * 203.47473 * 13 12 11 15 15 O 1.21279 * 120.00407 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00001 * 179.97438 * 14 13 12 17 17 S 1.80992 * 109.47533 * 179.97438 * 16 14 13 18 18 C 1.76194 * 100.00234 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00165 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00028 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00061 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99633 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47425 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47154 * 120.00084 * 22 20 18 25 25 H 1.48507 * 109.46874 * 239.99518 * 22 20 18 26 26 C 1.53776 * 113.61615 * 142.50589 * 10 8 6 27 27 H 1.08998 * 109.47068 * 59.99422 * 1 2 3 28 28 H 1.08998 * 109.47490 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46951 * 299.99992 * 1 2 3 30 30 H 1.09003 * 109.46951 * 240.00008 * 2 1 3 31 31 H 1.09001 * 109.46763 * 120.00171 * 2 1 3 32 32 H 1.07996 * 119.99974 * 298.52020 * 3 2 1 33 33 H 1.08992 * 109.47136 * 213.19978 * 5 4 3 34 34 H 1.09000 * 109.47410 * 333.20244 * 5 4 3 35 35 H 1.09011 * 109.46812 * 93.20294 * 5 4 3 36 36 H 1.09004 * 109.46985 * 272.70000 * 9 8 6 37 37 H 1.08999 * 109.47157 * 32.70236 * 9 8 6 38 38 H 1.09004 * 109.46688 * 152.70824 * 9 8 6 39 39 H 1.08997 * 112.90446 * 11.24883 * 10 8 6 40 40 H 1.09000 * 113.61315 * 105.46793 * 11 10 8 41 41 H 1.09007 * 113.61261 * 334.57026 * 11 10 8 42 42 H 1.09010 * 113.61395 * 139.97763 * 12 11 10 43 43 H 0.96995 * 119.99664 * 23.46741 * 13 12 11 44 44 H 1.09003 * 109.47153 * 300.00357 * 16 14 13 45 45 H 1.09001 * 109.47070 * 59.99708 * 16 14 13 46 46 H 0.96991 * 119.99893 * 180.02562 * 21 20 18 47 47 H 1.08995 * 113.61555 * 25.42615 * 26 10 8 48 48 H 1.09006 * 113.60945 * 254.53214 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.7726 1.8644 1.0120 5 6 3.0024 0.9898 2.2175 6 6 3.3669 3.2087 0.9546 7 8 3.0761 3.9639 0.0468 8 7 4.2337 3.6036 1.9082 9 6 4.7006 2.6473 2.9150 10 6 4.7088 4.9891 1.9379 11 6 6.2343 5.1204 1.7946 12 6 6.1597 6.2296 2.8570 13 7 5.9431 7.5656 2.2965 14 6 6.3158 8.6573 2.9934 15 8 6.8301 8.5337 4.0848 16 6 6.0935 10.0317 2.4166 17 16 6.6940 11.2796 3.5819 18 6 6.3197 12.7460 2.6797 19 1 5.8553 12.6780 1.7071 20 6 6.6228 13.9888 3.2186 21 7 7.1893 14.0718 4.4038 22 14 6.2253 15.5435 2.2623 23 1 5.5956 15.1808 0.9673 24 1 5.2885 16.3837 3.0507 25 1 7.4766 16.3020 2.0086 26 6 4.8727 5.5539 3.3588 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.7913 2.0788 -0.8218 33 1 3.0744 1.6120 3.1094 34 1 2.1701 0.2944 2.3259 35 1 3.9290 0.4302 2.0891 36 1 4.0033 2.6321 3.7527 37 1 4.7586 1.6529 2.4724 38 1 5.6874 2.9456 3.2692 39 1 4.1496 5.6438 1.2696 40 1 6.5519 5.4755 0.8142 41 1 6.7814 4.2367 2.1234 42 1 6.9776 6.2001 3.5772 43 1 5.5316 7.6645 1.4238 44 1 6.6353 10.1226 1.4751 45 1 5.0288 10.1834 2.2391 46 1 7.4008 14.9402 4.7805 47 1 5.0474 4.7889 4.1152 48 1 4.0909 6.2590 3.6412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718834617.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:48 Heat of formation + Delta-G solvation = -37.734769 kcal Electronic energy + Delta-G solvation = -26435.195645 eV Core-core repulsion = 22617.516860 eV Total energy + Delta-G solvation = -3817.678785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.85235 -40.73454 -39.21024 -37.20587 -36.15974 -34.60244 -34.10333 -32.37500 -30.60873 -29.17411 -27.69886 -27.03060 -26.72415 -26.28734 -24.24213 -22.21588 -21.73144 -20.03370 -19.86218 -19.36566 -18.25920 -17.58491 -17.45655 -17.14130 -16.89351 -16.81216 -16.40400 -15.99301 -15.97526 -15.19451 -14.89154 -14.76573 -14.63312 -14.44954 -14.40339 -14.19010 -14.01562 -13.63663 -13.50002 -13.26906 -13.17534 -13.10433 -12.96718 -12.92085 -12.77713 -12.57625 -12.22304 -11.89264 -11.87504 -11.73001 -11.53854 -11.45702 -11.17033 -10.98867 -10.74061 -10.29854 -10.13472 -10.10609 -9.48109 -8.67813 -8.36352 -6.14132 0.35854 1.25063 1.40148 1.45105 1.55571 1.56943 1.99143 2.17380 2.21241 2.26489 2.97882 3.29549 3.32267 3.54431 3.55415 3.80597 3.91847 3.95578 3.98422 4.15760 4.18715 4.27609 4.30834 4.44601 4.48394 4.51749 4.55881 4.65561 4.68940 4.77000 4.78993 4.82832 4.88997 4.90509 4.95675 5.02936 5.06970 5.13376 5.19430 5.32335 5.40970 5.45462 5.53288 5.57955 5.69130 6.18731 6.38754 6.44148 7.05279 7.10290 7.19179 8.73174 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024376 B = 0.001724 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.414710 B =16237.905260 C =17026.651370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.073 4.073 4 C -0.196 4.196 5 C -0.135 4.135 6 C 0.541 3.459 7 O -0.596 6.596 8 N -0.596 5.596 9 C 0.044 3.956 10 C 0.120 3.880 11 C -0.138 4.138 12 C 0.117 3.883 13 N -0.701 5.701 14 C 0.540 3.460 15 O -0.559 6.559 16 C -0.133 4.133 17 S -0.145 6.145 18 C -0.549 4.549 19 H 0.081 0.919 20 C 0.015 3.985 21 N -0.910 5.910 22 Si 0.998 3.002 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.150 4.150 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.121 0.879 42 H 0.097 0.903 43 H 0.413 0.587 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.272 0.728 47 H 0.119 0.881 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.623 -34.546 -7.342 36.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.140 4.140 3 C -0.093 4.093 4 C -0.199 4.199 5 C -0.190 4.190 6 C 0.334 3.666 7 O -0.478 6.478 8 N -0.326 5.326 9 C -0.097 4.097 10 C 0.016 3.984 11 C -0.177 4.177 12 C 0.011 3.989 13 N -0.354 5.354 14 C 0.326 3.674 15 O -0.437 6.437 16 C -0.284 4.284 17 S 0.082 5.918 18 C -0.697 4.697 19 H 0.099 0.901 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.820 3.180 23 H -0.183 1.183 24 H -0.198 1.198 25 H -0.198 1.198 26 C -0.190 4.190 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.140 0.860 42 H 0.115 0.885 43 H 0.250 0.750 44 H 0.127 0.873 45 H 0.125 0.875 46 H 0.081 0.919 47 H 0.137 0.863 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.836 -34.281 -5.837 35.880 hybrid contribution -0.920 1.812 -2.054 2.890 sum -9.756 -32.469 -7.891 34.809 Atomic orbital electron populations 1.21715 0.94347 1.02783 1.01852 1.20952 0.96695 0.91617 1.04728 1.23733 0.91762 0.97792 0.95978 1.21516 1.03822 0.94234 1.00334 1.21746 1.03495 0.98964 0.94799 1.19158 0.78487 0.88116 0.80880 1.90753 1.63804 1.57075 1.36214 1.47748 1.44354 1.10741 1.29715 1.23094 1.00901 0.94144 0.91522 1.22592 0.95023 0.82988 0.97790 1.23753 0.95909 0.98524 0.99479 1.21726 0.98769 0.80961 0.97420 1.45518 1.63130 1.04434 1.22286 1.20000 0.76799 0.86006 0.84608 1.90682 1.43954 1.87014 1.22057 1.23394 1.06112 0.94781 1.04101 1.85498 1.80918 0.98275 1.27117 1.23249 1.47148 0.92458 1.06796 0.90083 1.26106 0.94093 1.02641 0.96156 1.70177 1.40509 1.26373 1.17589 0.84913 0.78238 0.76538 0.78300 1.18262 1.19845 1.19786 1.23888 0.97703 1.00335 0.97042 0.93107 0.90668 0.92952 0.89175 0.88519 0.88151 0.88865 0.90101 0.88612 0.90346 0.86974 0.89798 0.88606 0.90236 0.86043 0.88494 0.75028 0.87265 0.87482 0.91930 0.86304 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 71.98 0.71 -0.38 16 2 C -0.10 -0.75 6.08 29.85 0.18 -0.56 16 3 C -0.07 -1.02 9.09 24.52 0.22 -0.80 16 4 C -0.20 -2.78 5.87 -18.71 -0.11 -2.89 16 5 C -0.13 -0.74 7.25 71.23 0.52 -0.22 16 6 C 0.54 11.52 7.59 86.57 0.66 12.18 16 7 O -0.60 -18.21 15.77 -4.07 -0.06 -18.28 16 8 N -0.60 -9.49 3.08 -823.90 -2.54 -12.03 16 9 C 0.04 0.30 7.35 127.77 0.94 1.24 16 10 C 0.12 2.20 4.07 45.52 0.19 2.38 16 11 C -0.14 -2.16 7.35 31.12 0.23 -1.94 16 12 C 0.12 2.52 4.30 45.51 0.20 2.72 16 13 N -0.70 -18.28 5.27 -440.05 -2.32 -20.60 16 14 C 0.54 20.07 7.85 87.66 0.69 20.76 16 15 O -0.56 -25.62 15.48 -3.03 -0.05 -25.66 16 16 C -0.13 -5.38 6.16 71.24 0.44 -4.94 16 17 S -0.15 -8.14 20.57 -56.49 -1.16 -9.30 16 18 C -0.55 -31.81 9.50 67.96 0.65 -31.16 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.86 5.49 84.86 0.47 1.32 16 21 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 22 Si 1.00 44.21 29.55 68.60 2.03 46.24 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 26 C -0.15 -2.75 7.29 31.12 0.23 -2.52 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.10 0.38 5.48 -2.39 -0.01 0.37 16 32 H 0.10 1.89 7.51 -2.91 -0.02 1.86 16 33 H 0.09 0.42 4.63 -2.39 -0.01 0.40 16 34 H 0.08 0.28 6.11 -2.39 -0.01 0.27 16 35 H 0.10 0.16 6.70 -2.38 -0.02 0.14 16 36 H 0.08 0.37 6.58 -2.39 -0.02 0.35 16 37 H 0.11 0.39 4.35 -2.39 -0.01 0.38 16 38 H 0.08 0.41 6.23 -2.39 -0.01 0.39 16 39 H 0.10 2.23 7.29 -2.39 -0.02 2.21 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.12 1.36 6.96 -2.38 -0.02 1.34 16 42 H 0.10 2.39 7.50 -2.38 -0.02 2.37 16 43 H 0.41 8.72 8.71 -92.71 -0.81 7.91 16 44 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 45 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 46 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 47 H 0.12 1.61 6.66 -2.39 -0.02 1.59 16 48 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -84.00 395.35 2.55 -81.45 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.18 Total: 18.92 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 6.19 Total: -4.81 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -4.57 Total: -88.55 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -0.11 Total: -43.94 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.16 Total: -9.30 kcal Total: -84.00 2.55 -81.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718834617.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.711 kcal (2) G-P(sol) polarization free energy of solvation -84.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds