Wall clock time and date at job start Sat Apr 11 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47109 * 2 1 4 4 C 1.53005 * 109.46987 * 120.00306 * 2 1 3 5 5 C 1.50702 * 109.47012 * 174.99815 * 4 2 1 6 6 O 1.21282 * 119.99686 * 0.02562 * 5 4 2 7 7 N 1.34771 * 119.99931 * 179.97438 * 5 4 2 8 8 C 1.47107 * 121.51317 * 0.19412 * 7 5 4 9 9 C 1.50323 * 109.10760 * 223.16312 * 8 7 5 10 10 C 1.29453 * 123.64941 * 348.53577 * 9 8 7 11 11 C 1.50700 * 117.69659 * 181.13826 * 10 9 8 12 12 N 1.46502 * 109.47174 * 95.00044 * 11 10 9 13 13 C 1.34775 * 120.00317 * 180.02562 * 12 11 10 14 14 O 1.21275 * 120.00152 * 0.02562 * 13 12 11 15 15 C 1.50705 * 120.00004 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.47091 * 179.97438 * 15 13 12 17 17 C 1.76194 * 99.99981 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00316 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00115 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99645 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00034 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46791 * 90.00386 * 21 19 17 23 23 H 1.48502 * 109.46948 * 210.00091 * 21 19 17 24 24 H 1.48493 * 109.47509 * 330.00054 * 21 19 17 25 25 C 1.49966 * 124.61374 * 1.16705 * 10 9 8 26 26 C 1.47340 * 121.37322 * 180.02562 * 7 5 4 27 27 H 1.09001 * 109.46736 * 299.99974 * 1 2 3 28 28 H 1.08996 * 109.46976 * 59.99712 * 1 2 3 29 29 H 1.09007 * 109.47061 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46736 * 240.00025 * 2 1 3 31 31 H 1.09002 * 109.46940 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47437 * 300.00006 * 3 2 1 33 33 H 1.09001 * 109.47300 * 60.00371 * 3 2 1 34 34 H 1.09001 * 109.46984 * 54.99712 * 4 2 1 35 35 H 1.09005 * 109.46935 * 294.99779 * 4 2 1 36 36 H 1.08998 * 109.71668 * 103.17412 * 8 7 5 37 37 H 1.08995 * 109.38596 * 342.95362 * 8 7 5 38 38 H 1.08002 * 118.17809 * 168.82401 * 9 8 7 39 39 H 1.08994 * 109.47597 * 215.00018 * 11 10 9 40 40 H 1.09006 * 109.47293 * 335.00618 * 11 10 9 41 41 H 0.97002 * 119.99650 * 0.02562 * 12 11 10 42 42 H 1.08999 * 109.47251 * 300.00038 * 15 13 12 43 43 H 1.08997 * 109.47090 * 59.99815 * 15 13 12 44 44 H 0.97007 * 119.99736 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.31913 * 101.26128 * 25 10 9 46 46 H 1.09002 * 109.31856 * 220.69360 * 25 10 9 47 47 H 1.08999 * 109.78080 * 358.61330 * 26 7 5 48 48 H 1.09007 * 109.82320 * 237.83377 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5420 -0.8295 1.1889 6 8 4.1451 -0.3741 0.2403 7 7 4.2150 -1.4315 2.1894 8 6 3.5169 -1.9980 3.3538 9 6 4.2688 -1.6337 4.6035 10 6 5.4569 -1.1198 4.6017 11 6 6.0968 -0.8301 5.9350 12 7 6.9483 -1.9573 6.3232 13 6 7.6254 -1.9206 7.4879 14 8 7.5295 -0.9547 8.2149 15 6 8.5018 -3.0799 7.8869 16 16 9.2703 -2.7321 9.4884 17 6 10.2094 -4.2073 9.7039 18 1 10.1816 -4.9802 8.9500 19 6 10.9849 -4.3761 10.8425 20 7 11.0184 -3.4344 11.7616 21 14 11.9800 -5.9404 11.0714 22 1 13.3302 -5.7590 10.4804 23 1 12.1098 -6.2369 12.5207 24 1 11.2911 -7.0687 10.3951 25 6 6.2413 -0.7918 3.3663 26 6 5.6830 -1.5535 2.1618 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6054 -1.7199 1.2951 35 1 1.7517 -0.1584 2.1370 36 1 3.4683 -3.0830 3.2613 37 1 2.5074 -1.5902 3.4041 38 1 3.7930 -1.8148 5.5560 39 1 6.7021 0.0731 5.8590 40 1 5.3208 -0.6854 6.6867 41 1 7.0248 -2.7301 5.7419 42 1 7.8970 -3.9835 7.9623 43 1 9.2781 -3.2240 7.1355 44 1 11.5608 -3.5522 12.5572 45 1 6.1810 0.2795 3.1747 46 1 7.2844 -1.0701 3.5170 47 1 6.0718 -1.1212 1.2398 48 1 5.9680 -2.6037 2.2254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718857995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:10 Heat of formation + Delta-G solvation = -96.356428 kcal Electronic energy + Delta-G solvation = -26284.877926 eV Core-core repulsion = 22464.657116 eV Total energy + Delta-G solvation = -3820.220810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 4.41 seconds Orbital eigenvalues (eV) -41.39016 -40.62534 -38.98450 -36.54811 -36.11391 -34.58121 -33.90399 -32.36019 -31.10765 -29.35718 -27.96634 -27.90548 -27.51880 -24.87039 -24.45363 -21.81113 -21.73102 -20.52876 -19.90432 -18.68841 -18.21086 -17.60492 -17.26384 -17.05459 -16.87229 -16.56062 -16.52433 -15.90217 -15.81055 -15.25243 -15.19416 -14.82314 -14.67690 -14.59616 -14.45094 -14.19945 -13.98356 -13.57528 -13.39390 -13.17382 -13.15925 -13.05484 -12.99502 -12.87947 -12.70693 -12.60560 -12.43305 -12.00167 -11.80695 -11.72863 -11.68978 -11.54936 -11.13925 -11.07068 -10.70874 -10.27283 -10.14083 -10.00076 -9.67190 -8.66319 -8.34291 -6.12375 0.92046 1.30957 1.42987 1.49765 1.60286 1.61212 1.64804 1.98040 2.27612 2.45367 3.00054 3.33584 3.45914 3.60872 3.77761 3.86910 3.98993 4.02310 4.05454 4.16176 4.29809 4.33108 4.35041 4.47502 4.51937 4.58412 4.64315 4.67145 4.72766 4.73800 4.76214 4.81085 4.85759 4.87909 5.00930 5.06132 5.12241 5.30473 5.36396 5.40928 5.42403 5.43271 5.51079 5.52138 5.84971 6.20221 6.43792 6.50675 7.07172 7.19139 7.23917 8.74893 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033341 B = 0.001607 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.599427 B =17416.354127 C =17619.241274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.152 4.152 4 C -0.132 4.132 5 C 0.511 3.489 6 O -0.581 6.581 7 N -0.618 5.618 8 C 0.135 3.865 9 C -0.134 4.134 10 C -0.135 4.135 11 C 0.156 3.844 12 N -0.706 5.706 13 C 0.534 3.466 14 O -0.567 6.567 15 C -0.129 4.129 16 S -0.153 6.153 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.257 1.257 25 C -0.093 4.093 26 C 0.112 3.888 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.416 0.584 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.271 0.729 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.678 0.947 -24.695 33.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 C -0.210 4.210 4 C -0.171 4.171 5 C 0.302 3.698 6 O -0.461 6.461 7 N -0.351 5.351 8 C 0.014 3.986 9 C -0.154 4.154 10 C -0.135 4.135 11 C 0.033 3.967 12 N -0.360 5.360 13 C 0.320 3.680 14 O -0.446 6.446 15 C -0.280 4.280 16 S 0.074 5.926 17 C -0.695 4.695 18 H 0.102 0.898 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.181 1.181 25 C -0.130 4.130 26 C -0.011 4.011 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.138 0.862 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.139 0.861 38 H 0.153 0.847 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.253 0.747 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.106 0.894 47 H 0.096 0.904 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.484 2.863 -23.845 32.898 hybrid contribution 1.252 -1.740 -0.464 2.194 sum -21.231 1.123 -24.309 32.295 Atomic orbital electron populations 1.21823 0.93145 1.02643 1.02432 1.20855 0.96425 0.95863 0.96901 1.21926 1.01242 0.96235 1.01563 1.21879 0.89399 1.04618 1.01200 1.21305 0.91536 0.75967 0.81000 1.90660 1.71443 1.49124 1.34861 1.48400 1.07523 1.57738 1.21434 1.20919 0.96596 1.00223 0.80850 1.22610 0.95169 0.97397 1.00195 1.20540 0.96499 1.02843 0.93667 1.20373 0.93440 0.88955 0.93950 1.45783 1.47265 1.22284 1.20708 1.20087 0.79559 0.87166 0.81238 1.90696 1.64801 1.35866 1.53224 1.23370 1.01876 1.00323 1.02425 1.85591 1.57942 1.28431 1.20603 1.23214 1.32358 1.04392 1.09509 0.89847 1.26121 0.97385 1.01276 0.94313 1.70187 1.39634 1.35235 1.09727 0.84955 0.78156 0.77189 0.77688 1.19393 1.20331 1.18124 1.20640 0.99814 1.00649 0.91933 1.21621 0.79842 1.01224 0.98396 0.91691 0.92609 0.91460 0.92367 0.93556 0.92899 0.92443 0.86231 0.86961 0.87572 0.86066 0.84730 0.92538 0.91468 0.74744 0.87060 0.87262 0.92011 0.91480 0.89369 0.90354 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.19 71.98 0.66 -0.32 16 2 C -0.08 -0.93 2.57 -10.79 -0.03 -0.95 16 3 C -0.15 -2.22 8.93 71.98 0.64 -1.58 16 4 C -0.13 -1.09 3.62 29.85 0.11 -0.99 16 5 C 0.51 8.04 7.44 87.66 0.65 8.70 16 6 O -0.58 -14.20 13.45 -3.04 -0.04 -14.24 16 7 N -0.62 -7.62 2.97 -823.01 -2.44 -10.06 16 8 C 0.14 0.81 6.50 85.40 0.56 1.37 16 9 C -0.13 -1.30 9.47 27.11 0.26 -1.04 16 10 C -0.13 -1.89 5.22 -15.14 -0.08 -1.97 16 11 C 0.16 3.24 5.66 85.63 0.48 3.73 16 12 N -0.71 -16.53 5.55 -466.79 -2.59 -19.12 16 13 C 0.53 19.00 7.85 87.66 0.69 19.69 16 14 O -0.57 -25.91 15.86 -3.01 -0.05 -25.95 16 15 C -0.13 -4.94 6.16 71.24 0.44 -4.51 16 16 S -0.15 -8.40 20.57 -56.49 -1.16 -9.57 16 17 C -0.55 -30.93 9.50 67.95 0.65 -30.28 16 18 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 19 C 0.01 0.78 5.49 84.86 0.47 1.25 16 20 N -0.91 -55.73 13.22 21.65 0.29 -55.44 16 21 Si 1.00 43.16 29.55 68.60 2.03 45.18 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 25 C -0.09 -1.33 5.94 29.64 0.18 -1.16 16 26 C 0.11 1.54 6.49 86.24 0.56 2.10 16 27 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.06 0.88 7.96 -2.39 -0.02 0.86 16 31 H 0.05 0.95 5.95 -2.39 -0.01 0.93 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 34 H 0.12 0.39 8.13 -2.39 -0.02 0.37 16 35 H 0.11 0.56 7.58 -2.38 -0.02 0.54 16 36 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.12 0.17 6.26 -2.39 -0.01 0.15 16 38 H 0.14 1.12 7.73 -2.91 -0.02 1.09 16 39 H 0.06 1.37 8.11 -2.39 -0.02 1.36 16 40 H 0.07 1.49 7.78 -2.38 -0.02 1.47 16 41 H 0.42 6.98 8.46 -92.71 -0.78 6.19 16 42 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 43 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 44 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.08 1.39 7.07 -2.39 -0.02 1.38 16 48 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -82.00 403.26 2.42 -79.58 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.17 Total: 15.60 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 6.23 Total: -5.97 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -4.75 Total: -84.63 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -0.09 Total: -40.19 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.57 kcal Total: -82.00 2.42 -79.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718857995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.777 kcal (2) G-P(sol) polarization free energy of solvation -82.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.41 seconds