Wall clock time and date at job start Sat Apr 11 2020 06:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46963 * 2 1 4 4 C 1.53004 * 109.46439 * 240.00630 * 2 1 3 5 5 C 1.50697 * 109.47484 * 120.00668 * 2 1 3 6 6 O 1.21279 * 119.99905 * 8.39408 * 5 2 1 7 7 N 1.34773 * 120.00079 * 188.40185 * 5 2 1 8 8 C 1.47011 * 121.37416 * 355.51872 * 7 5 2 9 9 C 1.50318 * 109.16479 * 222.92597 * 8 7 5 10 10 C 1.29449 * 123.65633 * 349.28434 * 9 8 7 11 11 C 1.50701 * 117.69972 * 180.57647 * 10 9 8 12 12 N 1.46492 * 109.47242 * 94.99990 * 11 10 9 13 13 C 1.34781 * 119.99876 * 180.02562 * 12 11 10 14 14 O 1.21274 * 120.00136 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99839 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47107 * 179.97438 * 15 13 12 17 17 C 1.76196 * 100.00001 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00182 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00093 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99581 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99880 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47550 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46685 * 120.00027 * 21 19 17 24 24 H 1.48500 * 109.47141 * 239.99527 * 21 19 17 25 25 C 1.49971 * 124.61246 * 0.33902 * 10 9 8 26 26 C 1.47341 * 121.37752 * 175.50154 * 7 5 2 27 27 H 1.09002 * 109.46887 * 299.99774 * 1 2 3 28 28 H 1.08998 * 109.47886 * 59.99407 * 1 2 3 29 29 H 1.09002 * 109.47149 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47051 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47427 * 300.00437 * 3 2 1 32 32 H 1.09002 * 109.47135 * 60.00377 * 3 2 1 33 33 H 1.08996 * 109.47429 * 315.73666 * 4 2 1 34 34 H 1.08998 * 109.47581 * 75.74415 * 4 2 1 35 35 H 1.09008 * 109.46692 * 195.74366 * 4 2 1 36 36 H 1.09005 * 109.51648 * 103.01884 * 8 7 5 37 37 H 1.08995 * 109.52431 * 342.83768 * 8 7 5 38 38 H 1.08008 * 118.17164 * 169.00432 * 9 8 7 39 39 H 1.09002 * 109.47294 * 215.00344 * 11 10 9 40 40 H 1.09006 * 109.46544 * 334.99950 * 11 10 9 41 41 H 0.97003 * 120.00244 * 359.97438 * 12 11 10 42 42 H 1.09002 * 109.47382 * 300.00037 * 15 13 12 43 43 H 1.09004 * 109.47278 * 59.99626 * 15 13 12 44 44 H 0.97001 * 120.00280 * 180.02562 * 20 19 17 45 45 H 1.08996 * 109.43313 * 221.05893 * 25 10 9 46 46 H 1.08998 * 109.12846 * 101.66710 * 25 10 9 47 47 H 1.08997 * 109.77486 * 237.83553 * 26 7 5 48 48 H 1.09004 * 109.77261 * 358.63657 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0398 -0.7212 -1.2494 5 6 2.0324 -0.7105 1.2303 6 8 1.2550 -1.3024 1.9487 7 7 3.3456 -0.6881 1.5324 8 6 4.3272 -0.0636 0.6336 9 6 5.5393 -0.9472 0.5363 10 6 5.7483 -1.9660 1.3072 11 6 7.0170 -2.7525 1.1003 12 7 8.0477 -2.2678 2.0215 13 6 9.2739 -2.8272 2.0154 14 8 9.5241 -3.7315 1.2470 15 6 10.3345 -2.3283 2.9627 16 16 11.8582 -3.2731 2.7143 17 6 12.8943 -2.5037 3.9139 18 1 12.5094 -1.6998 4.5240 19 6 14.2055 -2.9300 4.0743 20 7 14.6747 -3.9093 3.3305 21 14 15.3041 -2.1138 5.3456 22 1 14.5434 -1.0483 6.0464 23 1 15.7578 -3.1274 6.3315 24 1 16.4845 -1.5174 4.6701 25 6 4.8192 -2.4157 2.3952 26 6 3.8568 -1.2880 2.7773 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.4671 -1.6362 -1.4000 34 1 1.9223 -0.0720 -2.1171 35 1 3.0936 -0.9691 -1.1212 36 1 4.6167 0.9096 1.0303 37 1 3.8873 0.0615 -0.3557 38 1 6.2749 -0.7222 -0.2219 39 1 6.8254 -3.8082 1.2923 40 1 7.3592 -2.6262 0.0731 41 1 7.8480 -1.5438 2.6354 42 1 10.5258 -1.2725 2.7706 43 1 9.9926 -2.4544 3.9900 44 1 15.5909 -4.2075 3.4427 45 1 5.3997 -2.7064 3.2707 46 1 4.2470 -3.2744 2.0440 47 1 4.3853 -0.5337 3.3603 48 1 3.0283 -1.6915 3.3595 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718858215.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:17 Heat of formation + Delta-G solvation = -52.769472 kcal Electronic energy + Delta-G solvation = -26885.403050 eV Core-core repulsion = 23067.072312 eV Total energy + Delta-G solvation = -3818.330738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.18419 -39.37200 -38.12164 -36.34188 -35.15196 -32.82351 -32.44534 -31.62188 -29.68082 -27.91593 -27.71859 -27.41160 -25.51599 -24.48560 -24.19831 -22.15572 -20.44629 -19.89508 -18.20495 -17.64718 -17.11996 -16.57116 -16.23157 -15.99877 -15.89197 -15.30900 -15.08073 -14.86933 -14.82021 -14.41847 -14.31263 -14.00061 -13.80932 -13.50477 -13.17139 -13.07103 -12.84718 -12.79183 -12.64318 -12.52240 -12.51008 -12.26953 -12.11091 -11.89827 -11.73524 -11.46035 -11.16113 -11.08483 -11.03759 -10.98012 -10.77244 -9.99755 -9.83101 -9.69278 -9.25029 -9.09671 -9.06024 -8.93599 -8.25171 -6.52010 -6.23555 -3.94136 1.58982 2.24329 2.50728 3.06345 3.07975 3.20220 3.27818 3.33761 3.78021 3.88059 4.16393 4.18675 4.26755 4.36007 4.37234 4.56276 4.62358 4.70859 4.86735 4.93278 5.00596 5.08124 5.11550 5.11792 5.17304 5.20256 5.28672 5.32898 5.35839 5.39438 5.45782 5.48296 5.54947 5.60435 5.64695 5.71583 5.76960 5.82176 5.86413 6.00186 6.02676 6.11352 6.45727 6.55805 6.99240 7.58163 7.66895 7.77262 8.33660 8.57350 9.21956 10.83948 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029620 B = 0.001753 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.070588 B =15972.854084 C =16157.393381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.086 4.086 3 C -0.161 4.161 4 C -0.153 4.153 5 C 0.529 3.471 6 O -0.539 6.539 7 N -0.612 5.612 8 C 0.122 3.878 9 C -0.161 4.161 10 C -0.118 4.118 11 C 0.153 3.847 12 N -0.735 5.735 13 C 0.531 3.469 14 O -0.517 6.517 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.100 4.100 26 C 0.111 3.889 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.125 0.875 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.648 12.019 -7.198 30.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.089 4.089 3 C -0.218 4.218 4 C -0.210 4.210 5 C 0.318 3.682 6 O -0.415 6.415 7 N -0.346 5.346 8 C 0.000 4.000 9 C -0.181 4.181 10 C -0.119 4.119 11 C 0.029 3.971 12 N -0.389 5.389 13 C 0.318 3.682 14 O -0.391 6.391 15 C -0.303 4.303 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.138 4.138 26 C -0.011 4.011 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.131 0.869 38 H 0.142 0.858 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.092 0.908 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -27.504 10.047 -8.144 30.393 hybrid contribution 0.522 1.884 1.967 2.773 sum -26.982 11.931 -6.178 30.142 Atomic orbital electron populations 1.21673 0.91757 1.02989 1.02018 1.20788 0.98154 0.96390 0.93603 1.22323 1.02631 0.93703 1.03095 1.22122 1.01920 1.01036 0.95922 1.20581 0.81208 0.79852 0.86581 1.90689 1.54988 1.43824 1.52005 1.48144 1.06358 1.58100 1.22030 1.21198 0.87736 0.95406 0.95642 1.22409 0.98608 0.96460 1.00582 1.20845 0.96274 0.96916 0.97858 1.20341 0.84577 0.97885 0.94305 1.46031 1.11689 1.39961 1.41268 1.20342 0.82111 0.82032 0.83752 1.90707 1.79952 1.28763 1.39711 1.23529 1.00788 1.05207 1.00813 1.85409 1.00100 1.46484 1.51412 1.22910 0.99041 1.22931 1.23478 0.90867 1.24998 0.97085 0.95024 0.96507 1.70023 1.16299 1.25909 1.38022 0.86113 0.79859 0.79099 0.80397 1.19621 1.20558 1.20558 1.20759 0.96467 0.98750 0.97826 1.21697 0.97943 0.95400 0.86078 0.92137 0.91894 0.91733 0.90621 0.91210 0.92041 0.91638 0.90996 0.91134 0.89904 0.86894 0.85763 0.91029 0.91065 0.76805 0.89231 0.89222 0.92219 0.89323 0.90030 0.90770 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 7.75 37.16 0.29 -0.55 16 2 C -0.09 -0.55 0.75 -155.66 -0.12 -0.66 16 3 C -0.16 -0.71 8.03 37.16 0.30 -0.41 16 4 C -0.15 -0.78 8.13 37.16 0.30 -0.48 16 5 C 0.53 4.93 6.48 -10.99 -0.07 4.86 16 6 O -0.54 -7.05 15.48 5.56 0.09 -6.96 16 7 N -0.61 -4.72 2.96 -174.13 -0.51 -5.24 16 8 C 0.12 0.67 4.18 -5.10 -0.02 0.65 16 9 C -0.16 -1.08 9.47 -35.78 -0.34 -1.42 16 10 C -0.12 -0.96 5.23 -100.99 -0.53 -1.49 16 11 C 0.15 1.68 5.66 -5.20 -0.03 1.65 16 12 N -0.73 -9.26 5.55 -61.47 -0.34 -9.60 16 13 C 0.53 9.63 7.85 -10.98 -0.09 9.54 16 14 O -0.52 -11.57 15.86 5.56 0.09 -11.48 16 15 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -15.14 9.50 30.94 0.29 -14.84 16 18 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 21 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.10 -0.79 5.94 -28.18 -0.17 -0.95 16 26 C 0.11 0.86 6.50 -3.53 -0.02 0.84 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.50 8.01 -51.93 -0.42 0.09 16 30 H 0.08 0.26 4.14 -51.92 -0.22 0.05 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.38 8.04 -51.93 -0.42 -0.03 16 34 H 0.07 0.25 8.04 -51.93 -0.42 -0.17 16 35 H 0.07 0.36 5.33 -51.92 -0.28 0.08 16 36 H 0.08 0.36 7.63 -51.93 -0.40 -0.04 16 37 H 0.11 0.47 3.13 -51.93 -0.16 0.31 16 38 H 0.12 0.77 7.73 -52.48 -0.41 0.37 16 39 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 40 H 0.07 0.83 7.78 -51.93 -0.40 0.43 16 41 H 0.40 3.94 8.46 -40.82 -0.35 3.60 16 42 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 43 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.10 0.87 7.08 -51.93 -0.37 0.50 16 LS Contribution 394.51 15.07 5.95 5.95 Total: -1.00 -36.15 394.51 -8.91 -45.06 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.60 Total: -0.74 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -0.07 Total: -4.08 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.12 Total: -40.13 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.17 Total: -18.45 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.15 -8.91 -45.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718858215.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.709 kcal (2) G-P(sol) polarization free energy of solvation -36.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds