Wall clock time and date at job start Sat Apr 11 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46963 * 2 1 4 4 C 1.53004 * 109.46439 * 240.00630 * 2 1 3 5 5 C 1.50697 * 109.47484 * 120.00668 * 2 1 3 6 6 O 1.21279 * 119.99905 * 8.39408 * 5 2 1 7 7 N 1.34773 * 120.00079 * 188.40185 * 5 2 1 8 8 C 1.47011 * 121.37416 * 355.51872 * 7 5 2 9 9 C 1.50318 * 109.16479 * 222.92597 * 8 7 5 10 10 C 1.29449 * 123.65633 * 349.28434 * 9 8 7 11 11 C 1.50701 * 117.69972 * 180.57647 * 10 9 8 12 12 N 1.46492 * 109.47242 * 94.99990 * 11 10 9 13 13 C 1.34781 * 119.99876 * 180.02562 * 12 11 10 14 14 O 1.21274 * 120.00136 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99839 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47107 * 179.97438 * 15 13 12 17 17 C 1.76196 * 100.00001 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00182 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00093 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99581 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99880 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47550 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46685 * 120.00027 * 21 19 17 24 24 H 1.48500 * 109.47141 * 239.99527 * 21 19 17 25 25 C 1.49971 * 124.61246 * 0.33902 * 10 9 8 26 26 C 1.47341 * 121.37752 * 175.50154 * 7 5 2 27 27 H 1.09002 * 109.46887 * 299.99774 * 1 2 3 28 28 H 1.08998 * 109.47886 * 59.99407 * 1 2 3 29 29 H 1.09002 * 109.47149 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47051 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47427 * 300.00437 * 3 2 1 32 32 H 1.09002 * 109.47135 * 60.00377 * 3 2 1 33 33 H 1.08996 * 109.47429 * 315.73666 * 4 2 1 34 34 H 1.08998 * 109.47581 * 75.74415 * 4 2 1 35 35 H 1.09008 * 109.46692 * 195.74366 * 4 2 1 36 36 H 1.09005 * 109.51648 * 103.01884 * 8 7 5 37 37 H 1.08995 * 109.52431 * 342.83768 * 8 7 5 38 38 H 1.08008 * 118.17164 * 169.00432 * 9 8 7 39 39 H 1.09002 * 109.47294 * 215.00344 * 11 10 9 40 40 H 1.09006 * 109.46544 * 334.99950 * 11 10 9 41 41 H 0.97003 * 120.00244 * 359.97438 * 12 11 10 42 42 H 1.09002 * 109.47382 * 300.00037 * 15 13 12 43 43 H 1.09004 * 109.47278 * 59.99626 * 15 13 12 44 44 H 0.97001 * 120.00280 * 180.02562 * 20 19 17 45 45 H 1.08996 * 109.43313 * 221.05893 * 25 10 9 46 46 H 1.08998 * 109.12846 * 101.66710 * 25 10 9 47 47 H 1.08997 * 109.77486 * 237.83553 * 26 7 5 48 48 H 1.09004 * 109.77261 * 358.63657 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0398 -0.7212 -1.2494 5 6 2.0324 -0.7105 1.2303 6 8 1.2550 -1.3024 1.9487 7 7 3.3456 -0.6881 1.5324 8 6 4.3272 -0.0636 0.6336 9 6 5.5393 -0.9472 0.5363 10 6 5.7483 -1.9660 1.3072 11 6 7.0170 -2.7525 1.1003 12 7 8.0477 -2.2678 2.0215 13 6 9.2739 -2.8272 2.0154 14 8 9.5241 -3.7315 1.2470 15 6 10.3345 -2.3283 2.9627 16 16 11.8582 -3.2731 2.7143 17 6 12.8943 -2.5037 3.9139 18 1 12.5094 -1.6998 4.5240 19 6 14.2055 -2.9300 4.0743 20 7 14.6747 -3.9093 3.3305 21 14 15.3041 -2.1138 5.3456 22 1 14.5434 -1.0483 6.0464 23 1 15.7578 -3.1274 6.3315 24 1 16.4845 -1.5174 4.6701 25 6 4.8192 -2.4157 2.3952 26 6 3.8568 -1.2880 2.7773 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.4671 -1.6362 -1.4000 34 1 1.9223 -0.0720 -2.1171 35 1 3.0936 -0.9691 -1.1212 36 1 4.6167 0.9096 1.0303 37 1 3.8873 0.0615 -0.3557 38 1 6.2749 -0.7222 -0.2219 39 1 6.8254 -3.8082 1.2923 40 1 7.3592 -2.6262 0.0731 41 1 7.8480 -1.5438 2.6354 42 1 10.5258 -1.2725 2.7706 43 1 9.9926 -2.4544 3.9900 44 1 15.5909 -4.2075 3.4427 45 1 5.3997 -2.7064 3.2707 46 1 4.2470 -3.2744 2.0440 47 1 4.3853 -0.5337 3.3603 48 1 3.0283 -1.6915 3.3595 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718858215.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:15 Heat of formation + Delta-G solvation = -77.405545 kcal Electronic energy + Delta-G solvation = -26886.471350 eV Core-core repulsion = 23067.072312 eV Total energy + Delta-G solvation = -3819.399038 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.81513 -40.66034 -38.94583 -36.94616 -36.13357 -34.58283 -33.80486 -32.20864 -31.07362 -28.36480 -28.27703 -28.17838 -27.61647 -25.23528 -24.86505 -22.76553 -21.80801 -20.49532 -19.91832 -18.58404 -17.94370 -17.63752 -17.26581 -16.96692 -16.87375 -16.57228 -16.45436 -15.89734 -15.64673 -15.43780 -15.23685 -14.90997 -14.76571 -14.49069 -14.27834 -14.23191 -13.87862 -13.55457 -13.30114 -13.16932 -13.15499 -13.10482 -12.94287 -12.91903 -12.87841 -12.59232 -12.53392 -12.48816 -11.92003 -11.80704 -11.70562 -11.48561 -11.15616 -11.06322 -10.66397 -10.26670 -10.13785 -10.01244 -9.71391 -8.66192 -8.34538 -6.12340 0.90454 1.30952 1.41759 1.49937 1.56853 1.60829 1.61567 1.92123 2.27292 2.45245 2.99853 3.33619 3.33986 3.52082 3.71343 3.82659 3.91335 3.97355 4.01766 4.10126 4.22686 4.27901 4.31046 4.44721 4.52191 4.55129 4.58397 4.64239 4.71077 4.74282 4.74977 4.79671 4.83718 4.92959 4.95883 4.98855 5.05979 5.23175 5.30539 5.34353 5.36043 5.41718 5.42810 5.44925 5.82892 6.20469 6.37738 6.50853 7.07083 7.10512 7.24189 8.74911 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029620 B = 0.001753 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.070588 B =15972.854084 C =16157.393381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.084 4.084 3 C -0.157 4.157 4 C -0.151 4.151 5 C 0.521 3.479 6 O -0.588 6.588 7 N -0.611 5.611 8 C 0.117 3.883 9 C -0.137 4.137 10 C -0.132 4.132 11 C 0.156 3.844 12 N -0.706 5.706 13 C 0.534 3.466 14 O -0.567 6.567 15 C -0.129 4.129 16 S -0.153 6.153 17 C -0.545 4.545 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.256 1.256 23 H -0.275 1.275 24 H -0.274 1.274 25 C -0.093 4.093 26 C 0.111 3.889 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.416 0.584 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.271 0.729 45 H 0.090 0.910 46 H 0.066 0.934 47 H 0.092 0.908 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.106 15.255 -7.251 32.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.088 4.088 3 C -0.214 4.214 4 C -0.208 4.208 5 C 0.311 3.689 6 O -0.468 6.468 7 N -0.344 5.344 8 C -0.003 4.003 9 C -0.156 4.156 10 C -0.133 4.133 11 C 0.033 3.967 12 N -0.360 5.360 13 C 0.320 3.680 14 O -0.446 6.446 15 C -0.280 4.280 16 S 0.074 5.926 17 C -0.693 4.693 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.180 1.180 23 H -0.201 1.201 24 H -0.199 1.199 25 C -0.131 4.131 26 C -0.012 4.012 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.150 0.850 38 H 0.156 0.844 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.253 0.747 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.085 0.915 47 H 0.110 0.890 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -27.992 13.335 -8.193 32.070 hybrid contribution 0.511 0.915 1.930 2.196 sum -27.481 14.250 -6.263 31.583 Atomic orbital electron populations 1.21673 0.92341 1.01878 1.02498 1.20847 0.97768 0.97562 0.92574 1.22333 1.03426 0.91955 1.03679 1.22131 1.01665 1.00916 0.96046 1.21232 0.81337 0.79359 0.87021 1.90665 1.56296 1.46021 1.53780 1.48249 1.06404 1.57543 1.22157 1.21503 0.86636 0.95788 0.96370 1.22641 0.98761 0.95096 0.99144 1.20544 0.95351 0.97897 0.99470 1.20371 0.85125 0.97676 0.93523 1.45778 1.10047 1.39180 1.41038 1.20081 0.83311 0.81669 0.82961 1.90697 1.81049 1.31112 1.41693 1.23369 0.97361 1.04842 1.02417 1.85595 1.05107 1.49513 1.52378 1.23243 0.99544 1.23052 1.23457 0.89842 1.26129 0.98793 0.95532 0.98751 1.70186 1.16872 1.27684 1.40053 0.84904 0.77517 0.78233 0.77286 1.17963 1.20058 1.19920 1.20652 0.96262 0.98300 0.97880 1.21685 0.97322 0.95821 0.86340 0.93411 0.89567 0.93687 0.89275 0.89302 0.92856 0.92900 0.88584 0.90875 0.87377 0.84988 0.84449 0.92493 0.91358 0.74737 0.87039 0.87282 0.92013 0.89127 0.91542 0.89000 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 7.75 71.98 0.56 -1.03 16 2 C -0.08 -0.92 0.75 -52.93 -0.04 -0.96 16 3 C -0.16 -0.88 8.03 71.98 0.58 -0.30 16 4 C -0.15 -1.17 8.13 71.98 0.59 -0.59 16 5 C 0.52 9.35 6.48 87.66 0.57 9.92 16 6 O -0.59 -15.95 15.48 -3.03 -0.05 -16.00 16 7 N -0.61 -8.33 2.96 -823.21 -2.43 -10.76 16 8 C 0.12 0.85 4.18 85.42 0.36 1.21 16 9 C -0.14 -1.38 9.47 27.11 0.26 -1.12 16 10 C -0.13 -1.87 5.23 -15.13 -0.08 -1.95 16 11 C 0.16 3.24 5.66 85.63 0.48 3.72 16 12 N -0.71 -16.44 5.55 -466.79 -2.59 -19.03 16 13 C 0.53 18.93 7.85 87.66 0.69 19.62 16 14 O -0.57 -25.80 15.86 -3.01 -0.05 -25.85 16 15 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 16 S -0.15 -8.40 20.57 -56.49 -1.16 -9.57 16 17 C -0.55 -30.79 9.50 67.96 0.65 -30.14 16 18 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 19 C 0.01 0.71 5.49 84.86 0.47 1.18 16 20 N -0.91 -55.70 13.22 21.65 0.29 -55.42 16 21 Si 1.00 43.18 29.55 68.60 2.03 45.21 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 23 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 C -0.09 -1.38 5.94 29.65 0.18 -1.20 16 26 C 0.11 1.60 6.50 86.25 0.56 2.16 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.04 0.73 8.01 -2.39 -0.02 0.71 16 30 H 0.09 0.24 4.14 -2.38 -0.01 0.23 16 31 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.05 0.56 8.04 -2.39 -0.02 0.54 16 34 H 0.10 0.31 8.04 -2.39 -0.02 0.29 16 35 H 0.07 0.52 5.33 -2.38 -0.01 0.51 16 36 H 0.11 0.40 7.63 -2.38 -0.02 0.38 16 37 H 0.13 0.54 3.13 -2.39 -0.01 0.53 16 38 H 0.14 1.13 7.73 -2.91 -0.02 1.11 16 39 H 0.06 1.38 8.11 -2.39 -0.02 1.36 16 40 H 0.07 1.50 7.78 -2.38 -0.02 1.48 16 41 H 0.42 6.93 8.46 -92.71 -0.78 6.14 16 42 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 43 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 44 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 45 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.08 1.44 7.08 -2.38 -0.02 1.43 16 Total: -1.00 -82.73 394.51 2.46 -80.27 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.18 Total: 15.12 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 6.24 Total: -3.97 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -4.74 Total: -85.21 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.09 Total: -41.85 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.57 kcal Total: -82.73 2.46 -80.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718858215.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.864 kcal (2) G-P(sol) polarization free energy of solvation -82.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds