Wall clock time and date at job start Sat Apr 11 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00376 * 2 1 4 4 C 1.52993 * 109.47106 * 0.02562 * 3 2 1 5 5 C 1.53002 * 109.46965 * 239.99678 * 3 2 1 6 6 C 1.50698 * 109.46814 * 120.00119 * 3 2 1 7 7 O 1.21276 * 120.00447 * 348.50533 * 6 3 2 8 8 N 1.34781 * 119.99538 * 168.50901 * 6 3 2 9 9 C 1.46502 * 120.00213 * 3.45096 * 8 6 3 10 10 C 1.46504 * 119.99679 * 183.45743 * 8 6 3 11 11 C 1.52997 * 109.46676 * 275.47537 * 10 8 6 12 12 H 1.09005 * 112.96582 * 67.45277 * 11 10 8 13 13 C 1.53943 * 113.77539 * 295.76583 * 11 10 8 14 14 C 1.53937 * 86.29556 * 222.09602 * 13 11 10 15 15 N 1.47584 * 86.11692 * 23.60696 * 14 13 11 16 16 C 1.34770 * 134.49216 * 155.36535 * 15 14 13 17 17 O 1.21289 * 120.00032 * 184.99186 * 16 15 14 18 18 C 1.50703 * 120.00558 * 4.98673 * 16 15 14 19 19 S 1.80991 * 109.47652 * 180.02562 * 18 16 15 20 20 C 1.76194 * 100.00325 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00086 * 359.97438 * 20 19 18 22 22 C 1.38792 * 120.00441 * 180.02562 * 20 19 18 23 23 N 1.31636 * 119.99890 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00379 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46922 * 59.99864 * 24 22 20 26 26 H 1.48505 * 109.47294 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47160 * 299.99772 * 24 22 20 28 28 H 1.08002 * 119.99577 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.00279 * 179.97438 * 1 2 3 30 30 H 1.08008 * 119.99705 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47054 * 182.76217 * 4 3 2 32 32 H 1.09005 * 109.47324 * 302.75664 * 4 3 2 33 33 H 1.08998 * 109.47423 * 62.75802 * 4 3 2 34 34 H 1.08993 * 109.47421 * 300.00411 * 5 3 2 35 35 H 1.09001 * 109.46734 * 60.00446 * 5 3 2 36 36 H 1.09000 * 109.47004 * 179.97438 * 5 3 2 37 37 H 1.08996 * 109.47075 * 264.89832 * 9 8 6 38 38 H 1.09001 * 109.46987 * 144.89917 * 9 8 6 39 39 H 1.08994 * 109.46876 * 24.89920 * 9 8 6 40 40 H 1.08992 * 109.47542 * 35.47767 * 10 8 6 41 41 H 1.09001 * 109.47083 * 155.48059 * 10 8 6 42 42 H 1.09001 * 113.73882 * 336.44260 * 13 11 10 43 43 H 1.09004 * 113.74321 * 107.63766 * 13 11 10 44 44 H 1.09004 * 113.77353 * 137.90934 * 14 13 11 45 45 H 1.08999 * 113.76961 * 269.19197 * 14 13 11 46 46 H 1.08998 * 109.46705 * 300.00625 * 18 16 15 47 47 H 1.08997 * 109.46765 * 59.99877 * 18 16 15 48 48 H 0.97007 * 120.00136 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0695 2.4680 0.0006 5 6 2.9433 1.3860 -1.2492 6 6 2.9300 1.3847 1.2304 7 8 2.7850 0.5814 2.1273 8 7 3.8660 2.3490 1.3342 9 6 3.9906 3.3648 0.2859 10 6 4.7589 2.3811 2.4952 11 6 4.0705 3.1150 3.6477 12 1 3.2117 2.5734 4.0442 13 6 3.7874 4.6000 3.3568 14 6 4.2573 4.8687 4.7979 15 7 5.0019 3.5995 4.6850 16 6 6.0937 3.0882 5.2874 17 8 6.5452 2.0235 4.9221 18 6 6.7537 3.8395 6.4148 19 16 8.1832 2.9020 7.0093 20 6 8.7459 3.9784 8.2857 21 1 8.2212 4.9013 8.4842 22 6 9.8641 3.6409 9.0354 23 7 10.5040 2.5164 8.7932 24 14 10.4611 4.7825 10.3881 25 1 9.3884 4.9535 11.4008 26 1 11.6631 4.1976 11.0349 27 1 10.8059 6.1037 9.8045 28 1 -0.5399 0.9354 -0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.6136 3.4112 -0.0489 32 1 0.4103 2.3831 -0.8634 33 1 0.4761 2.4383 0.9145 34 1 3.6514 0.5575 -1.2492 35 1 2.3166 1.3283 -2.1392 36 1 3.4880 2.3301 -1.2495 37 1 4.7583 3.0605 -0.4254 38 1 4.2687 4.3182 0.7351 39 1 3.0373 3.4714 -0.2318 40 1 4.9931 1.3617 2.8019 41 1 5.6795 2.9016 2.2313 42 1 4.4384 5.0299 2.5956 43 1 2.7333 4.8210 3.1886 44 1 4.8968 5.7461 4.8951 45 1 3.4535 4.8448 5.5337 46 1 7.0827 4.8153 6.0576 47 1 6.0414 3.9719 7.2292 48 1 11.2858 2.2807 9.3170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001719396724.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:51 Heat of formation + Delta-G solvation = 11.597079 kcal Electronic energy + Delta-G solvation = -27596.529602 eV Core-core repulsion = 23780.990007 eV Total energy + Delta-G solvation = -3815.539595 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.05857 -39.98361 -37.44852 -36.66609 -35.82116 -32.41930 -31.69440 -30.56022 -28.97802 -28.01921 -27.89028 -27.23673 -25.46436 -24.38794 -23.24625 -22.00284 -20.47218 -18.97568 -18.54755 -17.67818 -16.91809 -16.75820 -16.52180 -16.24764 -15.78918 -15.16484 -15.03650 -14.79521 -14.61007 -14.27762 -14.14789 -13.84198 -13.66548 -13.36005 -13.25073 -12.90770 -12.72173 -12.67631 -12.50248 -12.41861 -12.14151 -11.97835 -11.86124 -11.70030 -11.63569 -11.31257 -11.04127 -11.03299 -10.91443 -10.84649 -10.75706 -9.97157 -9.81875 -9.61539 -9.28826 -9.05192 -8.99971 -8.48209 -8.22433 -6.49033 -6.20357 -3.91140 1.93476 2.40809 2.53581 2.98249 3.12543 3.23895 3.26392 3.29667 3.59233 4.07313 4.21058 4.22112 4.29508 4.48377 4.55453 4.64448 4.68179 4.71980 4.95693 4.99108 5.02998 5.06858 5.10129 5.14455 5.16155 5.26456 5.28240 5.31956 5.35364 5.38381 5.49425 5.51238 5.57048 5.58713 5.73593 5.78530 5.87658 5.90017 5.99510 6.03127 6.15985 6.29916 6.34582 6.43910 7.12398 7.60015 7.86830 7.96994 8.35950 8.58713 9.24467 10.86984 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028048 B = 0.002094 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.055243 B =13365.785781 C =13693.863079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.123 4.123 3 C -0.054 4.054 4 C -0.151 4.151 5 C -0.165 4.165 6 C 0.524 3.476 7 O -0.526 6.526 8 N -0.609 5.609 9 C 0.055 3.945 10 C 0.119 3.881 11 C 0.124 3.876 12 H 0.093 0.907 13 C -0.148 4.148 14 C 0.104 3.896 15 N -0.646 5.646 16 C 0.554 3.446 17 O -0.512 6.512 18 C -0.145 4.145 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.040 5.865 -22.506 31.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.141 4.141 3 C -0.057 4.057 4 C -0.208 4.208 5 C -0.222 4.222 6 C 0.311 3.689 7 O -0.400 6.400 8 N -0.343 5.343 9 C -0.087 4.087 10 C -0.004 4.004 11 C 0.020 3.980 12 H 0.111 0.889 13 C -0.185 4.185 14 C -0.019 4.019 15 N -0.386 5.386 16 C 0.343 3.657 17 O -0.386 6.386 18 C -0.295 4.295 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.130 0.870 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.067 3.628 -22.395 30.289 hybrid contribution -0.097 1.938 1.476 2.438 sum -20.164 5.566 -20.919 29.584 Atomic orbital electron populations 1.23940 0.95817 1.02217 1.00986 1.22471 0.95689 0.96486 0.99466 1.19848 0.95630 0.96003 0.94203 1.22138 0.98759 0.96564 1.03291 1.22429 0.99779 1.04327 0.95660 1.20522 0.80091 0.80305 0.88003 1.90744 1.67964 1.40476 1.40856 1.47722 1.35194 1.28966 1.22401 1.22555 1.03253 0.91681 0.91189 1.21535 0.91548 1.03299 0.84019 1.23068 0.91682 0.95391 0.87888 0.88897 1.23606 1.02038 0.95616 0.97285 1.23070 0.94732 0.87747 0.96365 1.50189 1.27034 1.19903 1.41460 1.20084 0.78628 0.85200 0.81774 1.90717 1.62468 1.21989 1.63385 1.23475 1.04166 1.03731 0.98145 1.85406 1.26197 1.28960 1.42764 1.22814 1.16368 1.08571 1.20613 0.91020 1.24996 0.95507 0.95719 0.97386 1.70015 1.18853 1.21926 1.39472 0.86220 0.78192 0.80196 0.80857 1.19942 1.20799 1.19944 0.87942 0.88234 0.86986 0.90939 0.90830 0.91553 0.91904 0.91411 0.89561 0.91916 0.91022 0.88901 0.88884 0.89596 0.89041 0.90066 0.89813 0.89891 0.89474 0.89412 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.45 13.70 29.01 0.40 -1.05 16 2 C -0.12 -1.09 8.03 -36.03 -0.29 -1.38 16 3 C -0.05 -0.42 0.72 -156.82 -0.11 -0.53 16 4 C -0.15 -0.81 6.92 37.15 0.26 -0.55 16 5 C -0.17 -0.95 7.99 37.16 0.30 -0.65 16 6 C 0.52 5.96 6.42 -10.98 -0.07 5.89 16 7 O -0.53 -8.48 15.79 5.56 0.09 -8.39 16 8 N -0.61 -5.89 2.75 -181.58 -0.50 -6.39 16 9 C 0.06 0.30 8.26 59.85 0.49 0.79 16 10 C 0.12 1.53 4.68 -4.04 -0.02 1.51 16 11 C 0.12 1.54 4.51 -66.86 -0.30 1.24 16 12 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.15 -1.20 7.17 -25.81 -0.19 -1.39 16 14 C 0.10 1.04 8.61 -2.98 -0.03 1.02 16 15 N -0.65 -9.60 3.49 -171.21 -0.60 -10.20 16 16 C 0.55 11.07 7.99 -10.99 -0.09 10.98 16 17 O -0.51 -12.21 15.92 5.55 0.09 -12.12 16 18 C -0.14 -3.06 5.91 36.01 0.21 -2.85 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.54 -15.48 9.50 30.94 0.29 -15.19 16 21 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.50 13.22 55.49 0.73 -25.76 16 24 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.10 0.63 5.69 -52.49 -0.30 0.33 16 29 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 30 H 0.11 1.09 8.06 -52.48 -0.42 0.66 16 31 H 0.07 0.27 5.26 -51.93 -0.27 0.00 16 32 H 0.07 0.30 7.32 -51.93 -0.38 -0.08 16 33 H 0.07 0.43 7.66 -51.93 -0.40 0.03 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.36 3.59 -51.93 -0.19 0.18 16 37 H 0.06 0.30 7.20 -51.93 -0.37 -0.08 16 38 H 0.07 0.32 6.37 -51.93 -0.33 -0.01 16 39 H 0.09 0.33 2.93 -51.93 -0.15 0.18 16 40 H 0.09 1.56 7.62 -51.93 -0.40 1.16 16 41 H 0.09 1.09 8.03 -51.93 -0.42 0.67 16 42 H 0.09 0.65 6.78 -51.93 -0.35 0.30 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 47 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 48 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 394.35 15.07 5.94 5.94 Total: -1.00 -37.66 394.35 -8.04 -45.70 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.33 Total: -1.36 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 0.77 Total: -0.14 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: -0.36 Total: -42.35 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.18 Total: -20.51 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.66 -8.04 -45.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719396724.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.297 kcal (2) G-P(sol) polarization free energy of solvation -37.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds