Wall clock time and date at job start Sat Apr 11 2020 06:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00376 * 2 1 4 4 C 1.52993 * 109.47106 * 0.02562 * 3 2 1 5 5 C 1.53002 * 109.46965 * 239.99678 * 3 2 1 6 6 C 1.50698 * 109.46814 * 120.00119 * 3 2 1 7 7 O 1.21276 * 120.00447 * 348.50533 * 6 3 2 8 8 N 1.34781 * 119.99538 * 168.50901 * 6 3 2 9 9 C 1.46502 * 120.00213 * 3.45096 * 8 6 3 10 10 C 1.46504 * 119.99679 * 183.45743 * 8 6 3 11 11 C 1.52997 * 109.46676 * 275.47537 * 10 8 6 12 12 H 1.09005 * 112.96582 * 67.45277 * 11 10 8 13 13 C 1.53943 * 113.77539 * 295.76583 * 11 10 8 14 14 C 1.53937 * 86.29556 * 222.09602 * 13 11 10 15 15 N 1.47584 * 86.11692 * 23.60696 * 14 13 11 16 16 C 1.34770 * 134.49216 * 155.36535 * 15 14 13 17 17 O 1.21289 * 120.00032 * 184.99186 * 16 15 14 18 18 C 1.50703 * 120.00558 * 4.98673 * 16 15 14 19 19 S 1.80991 * 109.47652 * 180.02562 * 18 16 15 20 20 C 1.76194 * 100.00325 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00086 * 359.97438 * 20 19 18 22 22 C 1.38792 * 120.00441 * 180.02562 * 20 19 18 23 23 N 1.31636 * 119.99890 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00379 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46922 * 59.99864 * 24 22 20 26 26 H 1.48505 * 109.47294 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47160 * 299.99772 * 24 22 20 28 28 H 1.08002 * 119.99577 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.00279 * 179.97438 * 1 2 3 30 30 H 1.08008 * 119.99705 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47054 * 182.76217 * 4 3 2 32 32 H 1.09005 * 109.47324 * 302.75664 * 4 3 2 33 33 H 1.08998 * 109.47423 * 62.75802 * 4 3 2 34 34 H 1.08993 * 109.47421 * 300.00411 * 5 3 2 35 35 H 1.09001 * 109.46734 * 60.00446 * 5 3 2 36 36 H 1.09000 * 109.47004 * 179.97438 * 5 3 2 37 37 H 1.08996 * 109.47075 * 264.89832 * 9 8 6 38 38 H 1.09001 * 109.46987 * 144.89917 * 9 8 6 39 39 H 1.08994 * 109.46876 * 24.89920 * 9 8 6 40 40 H 1.08992 * 109.47542 * 35.47767 * 10 8 6 41 41 H 1.09001 * 109.47083 * 155.48059 * 10 8 6 42 42 H 1.09001 * 113.73882 * 336.44260 * 13 11 10 43 43 H 1.09004 * 113.74321 * 107.63766 * 13 11 10 44 44 H 1.09004 * 113.77353 * 137.90934 * 14 13 11 45 45 H 1.08999 * 113.76961 * 269.19197 * 14 13 11 46 46 H 1.08998 * 109.46705 * 300.00625 * 18 16 15 47 47 H 1.08997 * 109.46765 * 59.99877 * 18 16 15 48 48 H 0.97007 * 120.00136 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0695 2.4680 0.0006 5 6 2.9433 1.3860 -1.2492 6 6 2.9300 1.3847 1.2304 7 8 2.7850 0.5814 2.1273 8 7 3.8660 2.3490 1.3342 9 6 3.9906 3.3648 0.2859 10 6 4.7589 2.3811 2.4952 11 6 4.0705 3.1150 3.6477 12 1 3.2117 2.5734 4.0442 13 6 3.7874 4.6000 3.3568 14 6 4.2573 4.8687 4.7979 15 7 5.0019 3.5995 4.6850 16 6 6.0937 3.0882 5.2874 17 8 6.5452 2.0235 4.9221 18 6 6.7537 3.8395 6.4148 19 16 8.1832 2.9020 7.0093 20 6 8.7459 3.9784 8.2857 21 1 8.2212 4.9013 8.4842 22 6 9.8641 3.6409 9.0354 23 7 10.5040 2.5164 8.7932 24 14 10.4611 4.7825 10.3881 25 1 9.3884 4.9535 11.4008 26 1 11.6631 4.1976 11.0349 27 1 10.8059 6.1037 9.8045 28 1 -0.5399 0.9354 -0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.6136 3.4112 -0.0489 32 1 0.4103 2.3831 -0.8634 33 1 0.4761 2.4383 0.9145 34 1 3.6514 0.5575 -1.2492 35 1 2.3166 1.3283 -2.1392 36 1 3.4880 2.3301 -1.2495 37 1 4.7583 3.0605 -0.4254 38 1 4.2687 4.3182 0.7351 39 1 3.0373 3.4714 -0.2318 40 1 4.9931 1.3617 2.8019 41 1 5.6795 2.9016 2.2313 42 1 4.4384 5.0299 2.5956 43 1 2.7333 4.8210 3.1886 44 1 4.8968 5.7461 4.8951 45 1 3.4535 4.8448 5.5337 46 1 7.0827 4.8153 6.0576 47 1 6.0414 3.9719 7.2292 48 1 11.2858 2.2807 9.3170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001719396724.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:49 Heat of formation + Delta-G solvation = -14.452881 kcal Electronic energy + Delta-G solvation = -27597.659213 eV Core-core repulsion = 23780.990007 eV Total energy + Delta-G solvation = -3816.669206 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.93903 -41.06809 -38.84778 -37.43271 -36.68280 -34.61126 -32.57448 -31.81960 -29.78590 -29.37116 -28.34793 -27.90158 -27.66457 -25.17656 -23.94993 -23.07881 -21.28808 -20.29003 -19.57550 -19.23346 -18.07401 -17.72812 -17.42466 -17.20829 -16.92305 -16.85851 -16.33987 -15.98958 -15.70081 -15.60458 -15.04895 -14.96322 -14.63368 -14.32927 -14.18434 -13.96861 -13.87707 -13.67243 -13.36136 -13.30067 -13.20086 -13.15085 -12.89106 -12.86070 -12.65545 -12.56759 -12.42555 -12.26467 -11.87348 -11.82048 -11.77378 -11.43786 -11.15045 -10.89027 -10.68249 -10.32052 -10.29733 -9.96780 -9.58361 -8.71582 -8.36586 -6.16309 1.14796 1.28468 1.40275 1.42785 1.51531 1.53507 1.58709 1.79923 2.23144 2.26310 2.97173 3.18554 3.36379 3.44530 3.64687 3.72131 3.81914 3.93341 4.00164 4.05606 4.10063 4.20001 4.22127 4.40568 4.41566 4.43360 4.51541 4.59524 4.61607 4.68160 4.74856 4.77414 4.81684 4.87517 4.92790 4.94898 4.98673 5.08261 5.21539 5.29976 5.36811 5.38463 5.46590 5.67645 5.81323 6.17075 6.34925 6.58837 7.03761 7.08006 7.13249 8.72544 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028048 B = 0.002094 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.055243 B =13365.785781 C =13693.863079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.151 4.151 3 C -0.047 4.047 4 C -0.148 4.148 5 C -0.163 4.163 6 C 0.515 3.485 7 O -0.587 6.587 8 N -0.601 5.601 9 C 0.044 3.956 10 C 0.127 3.873 11 C 0.116 3.884 12 H 0.077 0.923 13 C -0.117 4.117 14 C 0.098 3.902 15 N -0.645 5.645 16 C 0.548 3.452 17 O -0.567 6.567 18 C -0.116 4.116 19 S -0.155 6.155 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 1.002 2.998 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.259 1.259 28 H 0.123 0.877 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.038 0.962 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.109 0.891 47 H 0.101 0.899 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.275 10.380 -23.876 34.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.170 4.170 3 C -0.050 4.050 4 C -0.205 4.205 5 C -0.219 4.219 6 C 0.305 3.695 7 O -0.467 6.467 8 N -0.333 5.333 9 C -0.096 4.096 10 C 0.003 3.997 11 C 0.012 3.988 12 H 0.095 0.905 13 C -0.154 4.154 14 C -0.023 4.023 15 N -0.383 5.383 16 C 0.337 3.663 17 O -0.446 6.446 18 C -0.267 4.267 19 S 0.073 5.927 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.823 3.177 25 H -0.187 1.187 26 H -0.204 1.204 27 H -0.183 1.183 28 H 0.141 0.859 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.136 0.864 40 H 0.056 0.944 41 H 0.106 0.894 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.127 0.873 47 H 0.119 0.881 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.356 8.221 -23.823 33.688 hybrid contribution 0.461 0.496 1.803 1.926 sum -21.895 8.717 -22.020 32.253 Atomic orbital electron populations 1.24155 0.95306 1.03388 0.98891 1.22532 0.96447 0.96531 1.01458 1.19882 0.95734 0.96569 0.92844 1.22178 0.98428 0.96100 1.03760 1.22470 0.99561 1.04604 0.95292 1.21352 0.80228 0.79465 0.88474 1.90713 1.69904 1.42795 1.43277 1.47774 1.33736 1.29602 1.22204 1.22933 1.05167 0.91102 0.90368 1.21205 0.92527 1.00213 0.85761 1.23266 0.90195 0.98541 0.86835 0.90549 1.23559 1.04646 0.90714 0.96525 1.23532 0.94718 0.85845 0.98224 1.50336 1.25641 1.21734 1.40567 1.19898 0.80156 0.84475 0.81722 1.90696 1.64662 1.24228 1.64999 1.23256 1.01180 1.03287 0.98997 1.85637 1.30687 1.32402 1.44018 1.23148 1.16853 1.08738 1.20627 0.89858 1.26191 0.95481 0.97483 1.00171 1.70194 1.19477 1.24208 1.40968 0.84961 0.77733 0.77919 0.77109 1.18679 1.20363 1.18344 0.85916 0.87893 0.89303 0.88630 0.88687 0.92558 0.93901 0.89458 0.87527 0.90903 0.88979 0.86358 0.94380 0.89439 0.86970 0.86488 0.87968 0.88147 0.87304 0.88072 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 13.70 67.78 0.93 -1.61 16 2 C -0.15 -2.73 8.03 25.65 0.21 -2.53 16 3 C -0.05 -0.68 0.72 -53.68 -0.04 -0.72 16 4 C -0.15 -1.08 6.92 71.98 0.50 -0.58 16 5 C -0.16 -1.57 7.99 71.98 0.57 -0.99 16 6 C 0.52 11.98 6.42 87.66 0.56 12.54 16 7 O -0.59 -20.58 15.79 -3.02 -0.05 -20.63 16 8 N -0.60 -11.20 2.75 -846.77 -2.33 -13.53 16 9 C 0.04 0.32 8.26 127.77 1.06 1.38 16 10 C 0.13 3.40 4.68 86.38 0.40 3.80 16 11 C 0.12 2.80 4.51 45.09 0.20 3.01 16 12 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 13 C -0.12 -1.40 7.17 31.25 0.22 -1.18 16 14 C 0.10 1.60 8.61 86.48 0.74 2.35 16 15 N -0.65 -18.67 3.49 -813.97 -2.84 -21.51 16 16 C 0.55 22.48 7.99 87.66 0.70 23.18 16 17 O -0.57 -28.92 15.92 -3.06 -0.05 -28.97 16 18 C -0.12 -4.93 5.91 71.24 0.42 -4.51 16 19 S -0.15 -8.97 20.57 -56.49 -1.16 -10.13 16 20 C -0.55 -31.91 9.50 67.95 0.65 -31.26 16 21 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 22 C 0.01 0.66 5.49 84.85 0.47 1.13 16 23 N -0.91 -57.27 13.22 21.65 0.29 -56.98 16 24 Si 1.00 44.15 29.55 68.60 2.03 46.18 16 25 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 27 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 28 H 0.12 1.19 5.69 -2.91 -0.02 1.18 16 29 H 0.10 1.33 8.06 -2.91 -0.02 1.30 16 30 H 0.09 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.10 0.23 5.26 -2.39 -0.01 0.22 16 32 H 0.09 0.34 7.32 -2.38 -0.02 0.32 16 33 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 34 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 36 H 0.11 0.54 3.59 -2.39 -0.01 0.53 16 37 H 0.07 0.45 7.20 -2.39 -0.02 0.44 16 38 H 0.09 0.36 6.37 -2.39 -0.02 0.34 16 39 H 0.12 0.28 2.93 -2.39 -0.01 0.27 16 40 H 0.04 1.43 7.62 -2.39 -0.02 1.41 16 41 H 0.09 2.26 8.03 -2.39 -0.02 2.24 16 42 H 0.11 0.97 6.78 -2.39 -0.02 0.95 16 43 H 0.12 0.73 8.14 -2.38 -0.02 0.72 16 44 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.11 4.10 8.14 -2.40 -0.02 4.09 16 47 H 0.10 3.99 8.14 -2.40 -0.02 3.97 16 48 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 Total: -1.00 -91.65 394.35 4.44 -87.22 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.96 Total: 14.36 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 7.60 Total: 4.00 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -4.89 Total: -92.02 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -0.10 Total: -49.60 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.16 Total: -10.13 kcal Total: -91.65 4.44 -87.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719396724.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.763 kcal (2) G-P(sol) polarization free energy of solvation -91.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds