Wall clock time and date at job start Sat Apr 11 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00039 * 2 1 4 4 C 1.53007 * 109.47127 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47219 * 240.00616 * 3 2 1 6 6 C 1.50704 * 109.47048 * 120.00265 * 3 2 1 7 7 O 1.21276 * 119.99724 * 355.39996 * 6 3 2 8 8 N 1.34773 * 120.00127 * 175.39588 * 6 3 2 9 9 C 1.46497 * 120.00020 * 186.14546 * 8 6 3 10 10 C 1.46503 * 119.99726 * 6.14307 * 8 6 3 11 11 H 1.08993 * 110.64268 * 355.62155 * 10 8 6 12 12 C 1.55157 * 110.72145 * 232.47040 * 10 8 6 13 13 C 1.54903 * 101.58254 * 206.13887 * 12 10 8 14 14 N 1.47415 * 104.83523 * 37.01324 * 13 12 10 15 15 C 1.34780 * 125.65298 * 155.83882 * 14 13 12 16 16 O 1.21275 * 120.00231 * 180.02562 * 15 14 13 17 17 C 1.50699 * 119.99628 * 0.02562 * 15 14 13 18 18 S 1.80997 * 109.46976 * 180.02562 * 17 15 14 19 19 C 1.76203 * 99.99911 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99966 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99836 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00109 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99704 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47527 * 60.00217 * 23 21 19 25 25 H 1.48511 * 109.47135 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47504 * 299.99644 * 23 21 19 27 27 C 1.47023 * 108.70496 * 335.86903 * 14 13 12 28 28 H 1.08006 * 120.00150 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00413 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00010 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46997 * 174.54640 * 4 3 2 32 32 H 1.08999 * 109.46671 * 294.54939 * 4 3 2 33 33 H 1.08995 * 109.46898 * 54.54512 * 4 3 2 34 34 H 1.08995 * 109.47222 * 313.83506 * 5 3 2 35 35 H 1.09003 * 109.47309 * 73.84012 * 5 3 2 36 36 H 1.09005 * 109.46679 * 193.83526 * 5 3 2 37 37 H 1.08995 * 109.47475 * 86.49733 * 9 8 6 38 38 H 1.08999 * 109.46754 * 326.49381 * 9 8 6 39 39 H 1.09008 * 109.46865 * 206.50086 * 9 8 6 40 40 H 1.08995 * 111.00139 * 324.21773 * 12 10 8 41 41 H 1.09004 * 110.99715 * 88.06286 * 12 10 8 42 42 H 1.09001 * 110.36657 * 155.85180 * 13 12 10 43 43 H 1.09002 * 110.36775 * 278.16955 * 13 12 10 44 44 H 1.08993 * 109.47390 * 300.00715 * 17 15 14 45 45 H 1.09007 * 109.47029 * 60.00454 * 17 15 14 46 46 H 0.97004 * 120.00178 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.88719 * 241.64641 * 27 14 13 48 48 H 1.09002 * 109.88439 * 120.47446 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 0.0006 5 6 2.9430 1.3863 -1.2493 6 6 2.9299 1.3849 1.2305 7 8 2.8730 0.5114 2.0698 8 7 3.7682 2.4269 1.3980 9 6 4.7062 2.4388 2.5232 10 6 3.7413 3.5476 0.4548 11 1 3.0464 3.3469 -0.3606 12 6 5.1633 3.8372 -0.0943 13 6 5.0568 5.3396 -0.4561 14 7 4.2127 5.9238 0.6019 15 6 4.2092 7.2177 0.9792 16 8 3.4698 7.5888 1.8660 17 6 5.1240 8.2034 0.2990 18 16 4.8875 9.8451 1.0234 19 6 6.0444 10.7701 0.0691 20 1 6.6310 10.2788 -0.6931 21 6 6.2018 12.1303 0.2969 22 7 5.4865 12.7292 1.2255 23 14 7.4277 13.1110 -0.7153 24 1 7.0621 13.0280 -2.1522 25 1 7.4050 14.5309 -0.2806 26 1 8.7902 12.5543 -0.5182 27 6 3.3759 4.8611 1.1779 28 1 -0.5401 0.9353 0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 1.6107 3.4090 0.0983 32 1 0.5083 2.4670 -0.9339 33 1 0.3804 2.3567 0.8380 34 1 3.4750 0.4441 -1.3809 35 1 2.3180 1.5756 -2.1220 36 1 3.6625 2.1970 -1.1349 37 1 5.6191 1.9145 2.2409 38 1 4.2518 1.9416 3.3802 39 1 4.9454 3.4693 2.7859 40 1 5.9194 3.6728 0.6734 41 1 5.3702 3.2358 -0.9795 42 1 6.0441 5.8016 -0.4521 43 1 4.5835 5.4626 -1.4303 44 1 6.1595 7.8921 0.4355 45 1 4.8927 8.2389 -0.7657 46 1 5.5963 13.6798 1.3845 47 1 2.3224 5.0913 1.0185 48 1 3.5794 4.7661 2.2446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720351331.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:11 Heat of formation + Delta-G solvation = -43.678078 kcal Electronic energy + Delta-G solvation = -27934.106628 eV Core-core repulsion = 24116.170122 eV Total energy + Delta-G solvation = -3817.936506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.16020 -40.76753 -38.74954 -37.48190 -36.10056 -34.57334 -32.38906 -32.01915 -30.93068 -29.36767 -28.31525 -28.06059 -27.63176 -25.17464 -24.23999 -22.51205 -21.14477 -20.75627 -19.62083 -19.55792 -18.21405 -17.91122 -17.31234 -17.14602 -16.86801 -16.52490 -16.40748 -15.95914 -15.78141 -15.55141 -15.23401 -14.81108 -14.66498 -14.46094 -14.20595 -13.96139 -13.73911 -13.51266 -13.39599 -13.27947 -13.15071 -13.13809 -12.94095 -12.84580 -12.69289 -12.62957 -12.62244 -12.52390 -12.13518 -11.76530 -11.72356 -11.47854 -11.11479 -11.02303 -10.79946 -10.29983 -10.26313 -9.84327 -9.74190 -8.66849 -8.33284 -6.11919 1.20641 1.29529 1.43435 1.45353 1.48615 1.55127 1.56024 1.83863 2.18989 2.28814 3.00999 3.20993 3.32685 3.41609 3.45978 3.64140 3.81492 3.86402 3.90367 4.03230 4.10040 4.24217 4.28603 4.33041 4.44898 4.47272 4.49430 4.54811 4.61972 4.66870 4.72693 4.76728 4.79484 4.85268 4.89139 4.96945 5.04183 5.10698 5.21321 5.24080 5.30082 5.38908 5.42965 5.69202 5.81856 6.20816 6.23600 6.33574 7.02077 7.07862 7.09851 8.75613 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026390 B = 0.002153 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.733254 B =13004.964318 C =13016.827417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.142 4.142 3 C -0.053 4.053 4 C -0.163 4.163 5 C -0.156 4.156 6 C 0.525 3.475 7 O -0.575 6.575 8 N -0.600 5.600 9 C 0.079 3.921 10 C 0.111 3.889 11 H 0.157 0.843 12 C -0.136 4.136 13 C 0.090 3.910 14 N -0.613 5.613 15 C 0.547 3.453 16 O -0.568 6.568 17 C -0.118 4.118 18 S -0.156 6.156 19 C -0.544 4.544 20 H 0.085 0.915 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.260 1.260 25 H -0.281 1.281 26 H -0.261 1.261 27 C 0.092 3.908 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.127 0.873 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.271 0.729 47 H 0.070 0.930 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 -26.591 -10.399 28.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.161 4.161 3 C -0.056 4.056 4 C -0.219 4.219 5 C -0.213 4.213 6 C 0.315 3.685 7 O -0.454 6.454 8 N -0.331 5.331 9 C -0.064 4.064 10 C 0.007 3.993 11 H 0.173 0.827 12 C -0.174 4.174 13 C -0.032 4.032 14 N -0.349 5.349 15 C 0.335 3.665 16 O -0.446 6.446 17 C -0.269 4.269 18 S 0.071 5.929 19 C -0.691 4.691 20 H 0.103 0.897 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.820 3.180 24 H -0.185 1.185 25 H -0.207 1.207 26 H -0.186 1.186 27 C -0.032 4.032 28 H 0.131 0.869 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.145 0.855 42 H 0.110 0.890 43 H 0.119 0.881 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.744 -26.289 -8.514 27.886 hybrid contribution 1.257 0.438 -0.568 1.447 sum -2.487 -25.851 -9.081 27.512 Atomic orbital electron populations 1.24175 0.95717 1.03211 0.99298 1.22522 0.96097 0.96376 1.01056 1.19930 0.95735 0.96298 0.93670 1.22402 0.98921 0.96238 1.04379 1.22309 0.99882 1.03977 0.95096 1.21063 0.79273 0.80447 0.87761 1.90675 1.68180 1.40678 1.45829 1.47758 1.37527 1.19374 1.28456 1.21690 0.92909 1.02825 0.88943 1.22998 1.00829 0.83315 0.92179 0.82661 1.23291 0.95429 0.94768 1.03900 1.22732 0.96112 0.93207 0.91109 1.48297 1.41909 1.06023 1.38637 1.19830 0.82646 0.81832 0.82185 1.90704 1.42850 1.78452 1.32621 1.23293 1.02320 0.97199 1.04080 1.85659 1.55713 0.99833 1.51662 1.23155 1.25950 0.96572 1.23451 0.89652 1.26143 0.98425 0.98026 0.96661 1.70182 1.40691 1.11499 1.32495 0.85005 0.78060 0.76525 0.78417 1.18474 1.20662 1.18589 1.22351 0.95485 0.86968 0.98411 0.86948 0.87422 0.87711 0.90607 0.88463 0.92401 0.91587 0.88977 0.89431 0.90850 0.92094 0.90532 0.89631 0.85455 0.89035 0.88097 0.87292 0.86995 0.92049 0.91169 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 13.71 67.79 0.93 -1.53 16 2 C -0.14 -2.17 7.96 25.65 0.20 -1.97 16 3 C -0.05 -0.72 0.72 -53.67 -0.04 -0.76 16 4 C -0.16 -1.86 6.77 71.98 0.49 -1.37 16 5 C -0.16 -1.19 8.06 71.98 0.58 -0.61 16 6 C 0.52 10.41 6.46 87.66 0.57 10.98 16 7 O -0.57 -16.32 15.65 -3.02 -0.05 -16.37 16 8 N -0.60 -9.76 2.87 -815.95 -2.34 -12.10 16 9 C 0.08 1.32 8.90 127.77 1.14 2.45 16 10 C 0.11 1.38 1.24 46.18 0.06 1.44 16 11 H 0.16 1.36 2.81 -2.39 -0.01 1.35 16 12 C -0.14 -1.19 6.34 31.98 0.20 -0.99 16 13 C 0.09 1.20 6.69 86.85 0.58 1.78 16 14 N -0.61 -14.69 3.33 -811.80 -2.70 -17.39 16 15 C 0.55 19.76 7.87 87.66 0.69 20.45 16 16 O -0.57 -26.39 16.19 -3.01 -0.05 -26.44 16 17 C -0.12 -4.47 5.16 71.24 0.37 -4.10 16 18 S -0.16 -8.51 20.57 -56.49 -1.16 -9.67 16 19 C -0.54 -30.25 9.50 67.96 0.65 -29.60 16 20 H 0.09 4.34 7.80 -2.91 -0.02 4.32 16 21 C 0.01 0.68 5.49 84.86 0.47 1.15 16 22 N -0.91 -55.52 13.22 21.65 0.29 -55.23 16 23 Si 1.00 42.57 29.55 68.60 2.03 44.59 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 27 C 0.09 1.90 6.19 86.73 0.54 2.44 16 28 H 0.11 1.26 5.68 -2.91 -0.02 1.25 16 29 H 0.11 1.20 8.06 -2.91 -0.02 1.18 16 30 H 0.10 1.73 8.06 -2.91 -0.02 1.70 16 31 H 0.08 0.85 3.84 -2.39 -0.01 0.84 16 32 H 0.10 0.71 7.74 -2.39 -0.02 0.70 16 33 H 0.06 0.81 7.15 -2.39 -0.02 0.79 16 34 H 0.07 0.54 8.06 -2.39 -0.02 0.52 16 35 H 0.09 0.41 8.02 -2.39 -0.02 0.39 16 36 H 0.09 0.46 3.58 -2.38 -0.01 0.45 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.24 7.45 -2.39 -0.02 1.23 16 39 H 0.08 1.26 6.64 -2.38 -0.02 1.25 16 40 H 0.09 0.85 7.04 -2.39 -0.02 0.83 16 41 H 0.13 0.34 7.27 -2.38 -0.02 0.33 16 42 H 0.09 1.19 7.48 -2.39 -0.02 1.17 16 43 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.11 3.69 7.85 -2.40 -0.02 3.67 16 45 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 46 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 47 H 0.07 1.53 7.29 -2.39 -0.02 1.51 16 48 H 0.06 1.41 6.52 -2.39 -0.02 1.40 16 Total: -1.00 -82.84 384.79 4.40 -78.44 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.97 Total: 14.42 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 7.41 Total: -0.25 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -4.75 Total: -84.72 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -0.10 Total: -42.81 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -82.84 4.40 -78.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720351331.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.760 kcal (2) G-P(sol) polarization free energy of solvation -82.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds