Wall clock time and date at job start Sat Apr 11 2020 06:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00120 * 2 1 4 4 C 1.50699 * 120.00007 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.47500 * 95.00013 * 4 2 1 6 6 C 1.50694 * 109.47168 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00363 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99988 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99635 * 0.02562 * 8 6 5 10 10 C 1.46493 * 119.99864 * 179.72721 * 8 6 5 11 11 H 1.09005 * 110.64524 * 359.29352 * 10 8 6 12 12 C 1.55160 * 110.72454 * 122.44184 * 10 8 6 13 13 C 1.55110 * 101.49005 * 153.73054 * 12 10 8 14 14 N 1.47428 * 104.94386 * 323.22351 * 13 12 10 15 15 C 1.34774 * 125.64798 * 204.03802 * 14 13 12 16 16 O 1.21283 * 120.00045 * 179.97438 * 15 14 13 17 17 C 1.50701 * 120.00403 * 359.95804 * 15 14 13 18 18 S 1.80995 * 109.47311 * 179.97438 * 17 15 14 19 19 C 1.76209 * 99.99883 * 180.02562 * 18 17 15 20 20 H 1.07990 * 119.99915 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99820 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99819 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00076 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47269 * 90.00026 * 23 21 19 25 25 H 1.48500 * 109.47101 * 209.99846 * 23 21 19 26 26 H 1.48497 * 109.47409 * 329.99882 * 23 21 19 27 27 C 1.47023 * 108.70204 * 24.00387 * 14 13 12 28 28 H 1.07998 * 120.00124 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00115 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47748 * 270.00145 * 3 2 1 31 31 H 1.09004 * 109.46844 * 30.00522 * 3 2 1 32 32 H 1.09004 * 109.47259 * 149.99963 * 3 2 1 33 33 H 1.09000 * 109.46737 * 334.99751 * 4 2 1 34 34 H 1.09002 * 109.46890 * 214.99862 * 4 2 1 35 35 H 1.08998 * 109.46837 * 60.00023 * 5 4 2 36 36 H 1.09002 * 109.46926 * 299.99827 * 5 4 2 37 37 H 1.08995 * 109.47693 * 90.00207 * 9 8 6 38 38 H 1.09003 * 109.47006 * 210.00121 * 9 8 6 39 39 H 1.09004 * 109.47665 * 329.99813 * 9 8 6 40 40 H 1.09000 * 110.99794 * 271.94090 * 12 10 8 41 41 H 1.09007 * 110.99974 * 35.78362 * 12 10 8 42 42 H 1.08998 * 110.42158 * 204.29602 * 13 12 10 43 43 H 1.09003 * 110.30436 * 82.08795 * 13 12 10 44 44 H 1.08999 * 109.47096 * 300.00318 * 17 15 14 45 45 H 1.09006 * 109.46758 * 59.99516 * 17 15 14 46 46 H 0.97003 * 119.99793 * 179.97438 * 22 21 19 47 47 H 1.09005 * 109.87777 * 239.52802 * 27 14 13 48 48 H 1.08999 * 109.88056 * 118.36243 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 6 3.1803 -2.9887 -1.4383 7 8 3.4043 -3.5601 -0.3922 8 7 3.6049 -3.5213 -2.6014 9 6 3.3348 -2.8309 -3.8649 10 6 4.3420 -4.7873 -2.6014 11 1 4.4715 -5.1566 -1.5840 12 6 3.6207 -5.8427 -3.4808 13 6 4.8024 -6.7563 -3.8987 14 7 5.9410 -5.8401 -4.0930 15 6 7.0170 -6.0780 -4.8690 16 8 7.8978 -5.2486 -4.9551 17 6 7.1261 -7.3745 -5.6293 18 16 8.6712 -7.3933 -6.5716 19 6 8.5414 -8.9733 -7.3407 20 1 7.6785 -9.5953 -7.1543 21 6 9.5477 -9.4180 -8.1870 22 7 9.4504 -10.5981 -8.7619 23 14 11.0392 -8.3411 -8.5112 24 1 12.0925 -8.6394 -7.5080 25 1 11.5614 -8.6161 -9.8739 26 1 10.6493 -6.9118 -8.4096 27 6 5.7079 -4.6238 -3.3008 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 2.2452 1.6198 -1.0276 31 1 1.4744 2.0647 0.5139 32 1 3.0159 1.1747 0.5138 33 1 1.4385 -2.0856 0.4334 34 1 2.9742 -1.1991 0.5889 35 1 3.0523 -0.9028 -1.8717 36 1 1.5167 -1.7894 -2.0272 37 1 4.1548 -2.1485 -4.0886 38 1 3.2427 -3.5635 -4.6667 39 1 2.4059 -2.2670 -3.7795 40 1 2.8819 -6.3955 -2.9005 41 1 3.1614 -5.3766 -4.3526 42 1 4.5709 -7.2761 -4.8284 43 1 5.0236 -7.4739 -3.1086 44 1 7.1176 -8.2088 -4.9279 45 1 6.2824 -7.4665 -6.3135 46 1 10.1535 -10.9087 -9.3537 47 1 5.6868 -3.7530 -3.9561 48 1 6.4950 -4.5104 -2.5553 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720351892.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:25 Heat of formation + Delta-G solvation = -53.934837 kcal Electronic energy + Delta-G solvation = -26623.394164 eV Core-core repulsion = 22805.012892 eV Total energy + Delta-G solvation = -3818.381272 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.79144 -39.56931 -37.64113 -36.74488 -35.33582 -32.45887 -32.15038 -30.97689 -29.84939 -28.40434 -27.72228 -27.21552 -25.65080 -25.08962 -23.44542 -21.39260 -19.53284 -19.40948 -18.93762 -17.78535 -17.62920 -16.92438 -16.41712 -16.36408 -15.79475 -15.24479 -15.09770 -14.91709 -14.72984 -14.33542 -14.10896 -13.88253 -13.80770 -13.59910 -13.43679 -13.04055 -12.95887 -12.86592 -12.78432 -12.54849 -12.34767 -12.16783 -12.13998 -11.92914 -11.86201 -11.49469 -11.33437 -11.28621 -11.10846 -11.02212 -10.63148 -10.20043 -9.87975 -9.59938 -9.48206 -9.09171 -9.01999 -8.66585 -8.52191 -6.94503 -6.30636 -4.02787 1.73274 2.21057 2.39251 2.74479 2.89725 3.19657 3.32245 3.49124 3.57736 3.98567 4.18213 4.24577 4.31819 4.41829 4.51294 4.58377 4.64498 4.68469 4.72325 4.77078 4.86490 4.96558 5.04813 5.08094 5.08500 5.10032 5.17059 5.21082 5.29421 5.40901 5.42737 5.49754 5.51179 5.53180 5.56823 5.65196 5.69153 5.72188 5.78654 5.97503 6.05057 6.18261 6.26969 6.41571 6.91934 7.49006 7.75461 7.92340 8.37487 8.39775 9.15506 10.78508 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033478 B = 0.001788 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.168320 B =15655.437156 C =16044.555652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.072 4.072 5 C -0.132 4.132 6 C 0.516 3.484 7 O -0.538 6.538 8 N -0.608 5.608 9 C 0.070 3.930 10 C 0.128 3.872 11 H 0.118 0.882 12 C -0.143 4.143 13 C 0.101 3.899 14 N -0.624 5.624 15 C 0.548 3.452 16 O -0.516 6.516 17 C -0.117 4.117 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.102 3.898 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.072 0.928 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.756 19.807 14.956 32.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.126 4.126 3 C -0.179 4.179 4 C -0.110 4.110 5 C -0.172 4.172 6 C 0.305 3.695 7 O -0.414 6.414 8 N -0.341 5.341 9 C -0.073 4.073 10 C 0.024 3.976 11 H 0.136 0.864 12 C -0.182 4.182 13 C -0.023 4.023 14 N -0.362 5.362 15 C 0.336 3.664 16 O -0.390 6.390 17 C -0.268 4.268 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.023 4.023 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.166 20.587 15.202 31.973 hybrid contribution -0.394 -0.811 -0.375 0.976 sum -19.560 19.776 14.827 31.521 Atomic orbital electron populations 1.23732 0.95240 1.01942 1.02355 1.21771 0.95418 0.95671 0.99691 1.20896 1.00310 0.94468 1.02199 1.20457 1.00980 0.94365 0.95152 1.21671 1.01114 0.94849 0.99519 1.20792 0.78958 0.86845 0.82951 1.90713 1.56920 1.62708 1.31072 1.47790 1.56049 1.23119 1.07171 1.21887 1.01592 0.97894 0.85897 1.22114 0.90222 0.83602 1.01654 0.86395 1.23215 0.97598 0.96995 1.00351 1.22350 0.84815 0.92795 1.02335 1.48383 1.21176 1.18915 1.47690 1.20016 0.79810 0.88523 0.78023 1.90713 1.38216 1.47285 1.62828 1.23254 1.04940 0.96721 1.01871 1.84805 1.23015 1.26660 1.57089 1.22302 1.11177 1.00928 1.32506 0.89364 1.24703 0.97821 0.94695 0.94019 1.69938 1.34215 1.17955 1.29502 0.86738 0.83318 0.83283 0.78539 1.19188 1.19909 1.15946 1.22111 0.96316 0.88809 0.95028 0.88438 0.88456 0.91373 0.91840 0.91693 0.90505 0.90374 0.88610 0.88688 0.92000 0.90340 0.90523 0.89196 0.89889 0.89636 0.90744 0.88466 0.88491 0.91925 0.91011 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.06 13.89 29.02 0.40 -0.66 16 2 C -0.13 -0.73 5.31 -101.07 -0.54 -1.26 16 3 C -0.12 -0.58 10.03 36.01 0.36 -0.22 16 4 C -0.07 -0.49 4.67 -27.88 -0.13 -0.62 16 5 C -0.13 -0.77 4.23 -27.89 -0.12 -0.89 16 6 C 0.52 4.64 7.67 -10.98 -0.08 4.56 16 7 O -0.54 -6.86 15.35 5.56 0.09 -6.78 16 8 N -0.61 -4.82 2.88 -171.84 -0.50 -5.32 16 9 C 0.07 0.37 9.02 59.84 0.54 0.91 16 10 C 0.13 1.18 3.35 -66.10 -0.22 0.96 16 11 H 0.12 1.25 6.99 -51.93 -0.36 0.88 16 12 C -0.14 -1.09 6.64 -24.47 -0.16 -1.25 16 13 C 0.10 0.98 6.69 -2.42 -0.02 0.97 16 14 N -0.62 -8.43 3.33 -170.39 -0.57 -9.00 16 15 C 0.55 9.98 7.87 -10.99 -0.09 9.89 16 16 O -0.52 -11.37 16.19 5.55 0.09 -11.28 16 17 C -0.12 -2.28 5.16 36.01 0.19 -2.09 16 18 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 19 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 20 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.39 13.97 55.49 0.78 -25.62 16 23 Si 0.86 21.72 27.74 -169.99 -4.71 17.00 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 27 C 0.10 1.19 6.50 -3.06 -0.02 1.17 16 28 H 0.10 0.50 7.99 -52.49 -0.42 0.08 16 29 H 0.10 0.44 8.04 -52.49 -0.42 0.02 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.27 8.06 -51.93 -0.42 -0.15 16 32 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 33 H 0.08 0.59 7.94 -51.93 -0.41 0.18 16 34 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 35 H 0.10 0.44 8.11 -51.93 -0.42 0.02 16 36 H 0.09 0.41 7.40 -51.93 -0.38 0.02 16 37 H 0.06 0.33 7.86 -51.93 -0.41 -0.08 16 38 H 0.08 0.42 6.25 -51.93 -0.32 0.09 16 39 H 0.08 0.24 6.44 -51.93 -0.33 -0.09 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.57 6.26 -51.93 -0.32 0.25 16 42 H 0.09 0.80 7.48 -51.93 -0.39 0.41 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 45 H 0.10 1.73 7.85 -51.91 -0.41 1.33 16 46 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.07 0.84 6.81 -51.93 -0.35 0.49 16 48 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 402.20 15.07 6.06 6.06 Total: -1.00 -35.71 402.20 -8.34 -44.05 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -7.91 Total: -3.07 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 0.33 Total: -0.46 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: -0.29 Total: -39.93 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.18 Total: -18.06 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.71 -8.34 -44.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720351892.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.889 kcal (2) G-P(sol) polarization free energy of solvation -35.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds