Wall clock time and date at job start Sat Apr 11 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00120 * 2 1 4 4 C 1.50699 * 120.00007 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.47500 * 95.00013 * 4 2 1 6 6 C 1.50694 * 109.47168 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00363 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99988 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99635 * 0.02562 * 8 6 5 10 10 C 1.46493 * 119.99864 * 179.72721 * 8 6 5 11 11 H 1.09005 * 110.64524 * 359.29352 * 10 8 6 12 12 C 1.55160 * 110.72454 * 122.44184 * 10 8 6 13 13 C 1.55110 * 101.49005 * 153.73054 * 12 10 8 14 14 N 1.47428 * 104.94386 * 323.22351 * 13 12 10 15 15 C 1.34774 * 125.64798 * 204.03802 * 14 13 12 16 16 O 1.21283 * 120.00045 * 179.97438 * 15 14 13 17 17 C 1.50701 * 120.00403 * 359.95804 * 15 14 13 18 18 S 1.80995 * 109.47311 * 179.97438 * 17 15 14 19 19 C 1.76209 * 99.99883 * 180.02562 * 18 17 15 20 20 H 1.07990 * 119.99915 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99820 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99819 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00076 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47269 * 90.00026 * 23 21 19 25 25 H 1.48500 * 109.47101 * 209.99846 * 23 21 19 26 26 H 1.48497 * 109.47409 * 329.99882 * 23 21 19 27 27 C 1.47023 * 108.70204 * 24.00387 * 14 13 12 28 28 H 1.07998 * 120.00124 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00115 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47748 * 270.00145 * 3 2 1 31 31 H 1.09004 * 109.46844 * 30.00522 * 3 2 1 32 32 H 1.09004 * 109.47259 * 149.99963 * 3 2 1 33 33 H 1.09000 * 109.46737 * 334.99751 * 4 2 1 34 34 H 1.09002 * 109.46890 * 214.99862 * 4 2 1 35 35 H 1.08998 * 109.46837 * 60.00023 * 5 4 2 36 36 H 1.09002 * 109.46926 * 299.99827 * 5 4 2 37 37 H 1.08995 * 109.47693 * 90.00207 * 9 8 6 38 38 H 1.09003 * 109.47006 * 210.00121 * 9 8 6 39 39 H 1.09004 * 109.47665 * 329.99813 * 9 8 6 40 40 H 1.09000 * 110.99794 * 271.94090 * 12 10 8 41 41 H 1.09007 * 110.99974 * 35.78362 * 12 10 8 42 42 H 1.08998 * 110.42158 * 204.29602 * 13 12 10 43 43 H 1.09003 * 110.30436 * 82.08795 * 13 12 10 44 44 H 1.08999 * 109.47096 * 300.00318 * 17 15 14 45 45 H 1.09006 * 109.46758 * 59.99516 * 17 15 14 46 46 H 0.97003 * 119.99793 * 179.97438 * 22 21 19 47 47 H 1.09005 * 109.87777 * 239.52802 * 27 14 13 48 48 H 1.08999 * 109.88056 * 118.36243 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 6 3.1803 -2.9887 -1.4383 7 8 3.4043 -3.5601 -0.3922 8 7 3.6049 -3.5213 -2.6014 9 6 3.3348 -2.8309 -3.8649 10 6 4.3420 -4.7873 -2.6014 11 1 4.4715 -5.1566 -1.5840 12 6 3.6207 -5.8427 -3.4808 13 6 4.8024 -6.7563 -3.8987 14 7 5.9410 -5.8401 -4.0930 15 6 7.0170 -6.0780 -4.8690 16 8 7.8978 -5.2486 -4.9551 17 6 7.1261 -7.3745 -5.6293 18 16 8.6712 -7.3933 -6.5716 19 6 8.5414 -8.9733 -7.3407 20 1 7.6785 -9.5953 -7.1543 21 6 9.5477 -9.4180 -8.1870 22 7 9.4504 -10.5981 -8.7619 23 14 11.0392 -8.3411 -8.5112 24 1 12.0925 -8.6394 -7.5080 25 1 11.5614 -8.6161 -9.8739 26 1 10.6493 -6.9118 -8.4096 27 6 5.7079 -4.6238 -3.3008 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 2.2452 1.6198 -1.0276 31 1 1.4744 2.0647 0.5139 32 1 3.0159 1.1747 0.5138 33 1 1.4385 -2.0856 0.4334 34 1 2.9742 -1.1991 0.5889 35 1 3.0523 -0.9028 -1.8717 36 1 1.5167 -1.7894 -2.0272 37 1 4.1548 -2.1485 -4.0886 38 1 3.2427 -3.5635 -4.6667 39 1 2.4059 -2.2670 -3.7795 40 1 2.8819 -6.3955 -2.9005 41 1 3.1614 -5.3766 -4.3526 42 1 4.5709 -7.2761 -4.8284 43 1 5.0236 -7.4739 -3.1086 44 1 7.1176 -8.2088 -4.9279 45 1 6.2824 -7.4665 -6.3135 46 1 10.1535 -10.9087 -9.3537 47 1 5.6868 -3.7530 -3.9561 48 1 6.4950 -4.5104 -2.5553 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720351892.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:22 Heat of formation + Delta-G solvation = -76.392194 kcal Electronic energy + Delta-G solvation = -26624.367988 eV Core-core repulsion = 22805.012892 eV Total energy + Delta-G solvation = -3819.355096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.62468 -40.65451 -38.69292 -37.27451 -36.17355 -34.67940 -32.97193 -31.82399 -30.95997 -29.40028 -28.09380 -27.90292 -27.75145 -25.78010 -24.37246 -22.13012 -20.85481 -20.08330 -19.64606 -19.40171 -18.35905 -18.18690 -17.30613 -17.15756 -16.99415 -16.79448 -16.49996 -15.72409 -15.63075 -15.39217 -15.18764 -14.91963 -14.71361 -14.67155 -14.13268 -14.07251 -14.00420 -13.73836 -13.50126 -13.42694 -13.34176 -13.23126 -13.02733 -12.89575 -12.72997 -12.69216 -12.65440 -12.51669 -11.97450 -11.88959 -11.81527 -11.78196 -11.17845 -11.10804 -10.90878 -10.55223 -9.90388 -9.82619 -9.76474 -9.02025 -8.52109 -6.23593 0.92910 1.30237 1.31016 1.41868 1.45723 1.50167 1.55510 1.80008 2.15004 2.24486 2.66541 2.86232 3.30674 3.37518 3.57699 3.76336 3.92758 3.97430 4.04946 4.08293 4.13535 4.14315 4.21755 4.32507 4.34889 4.39205 4.55611 4.60030 4.66340 4.69639 4.72973 4.76427 4.86855 4.89234 4.94405 4.98381 5.06453 5.11456 5.16187 5.18903 5.20187 5.44936 5.70245 5.77428 6.00154 6.10887 6.25465 6.29814 6.93020 6.98684 7.08862 8.60103 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033478 B = 0.001788 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.168320 B =15655.437156 C =16044.555652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.132 4.132 3 C -0.122 4.122 4 C -0.070 4.070 5 C -0.123 4.123 6 C 0.512 3.488 7 O -0.583 6.583 8 N -0.605 5.605 9 C 0.063 3.937 10 C 0.135 3.865 11 H 0.103 0.897 12 C -0.127 4.127 13 C 0.091 3.909 14 N -0.613 5.613 15 C 0.549 3.451 16 O -0.563 6.563 17 C -0.102 4.102 18 S -0.176 6.176 19 C -0.529 4.529 20 H 0.064 0.936 21 C 0.048 3.952 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.264 1.264 25 H -0.258 1.258 26 H -0.237 1.237 27 C 0.102 3.898 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.111 0.889 45 H 0.116 0.884 46 H 0.277 0.723 47 H 0.074 0.926 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.607 21.392 14.816 34.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.132 4.132 3 C -0.179 4.179 4 C -0.107 4.107 5 C -0.162 4.162 6 C 0.302 3.698 7 O -0.463 6.463 8 N -0.337 5.337 9 C -0.078 4.078 10 C 0.030 3.970 11 H 0.121 0.879 12 C -0.166 4.166 13 C -0.032 4.032 14 N -0.348 5.348 15 C 0.337 3.663 16 O -0.442 6.442 17 C -0.252 4.252 18 S 0.050 5.950 19 C -0.676 4.676 20 H 0.082 0.918 21 C -0.158 4.158 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.189 1.189 25 H -0.182 1.182 26 H -0.161 1.161 27 C -0.022 4.022 28 H 0.117 0.883 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.129 0.871 45 H 0.134 0.866 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.076 22.170 15.060 34.096 hybrid contribution 0.026 -1.307 -0.215 1.325 sum -21.050 20.864 14.844 33.147 Atomic orbital electron populations 1.23856 0.95157 1.02509 1.01668 1.21772 0.95582 0.95477 1.00363 1.20917 1.00049 0.94066 1.02875 1.20383 1.00093 0.94665 0.95607 1.21687 1.01901 0.93349 0.99292 1.21374 0.78566 0.87444 0.82411 1.90697 1.58781 1.64067 1.32712 1.47865 1.55152 1.22665 1.08030 1.22126 1.03057 0.98106 0.84516 1.21908 0.89309 0.84973 1.00807 0.87877 1.23184 0.96786 0.95940 1.00653 1.22698 0.84139 0.92929 1.03386 1.48285 1.20569 1.20148 1.45819 1.19696 0.80526 0.87516 0.78538 1.90693 1.40251 1.48397 1.64814 1.23200 1.01906 0.98261 1.01865 1.84745 1.27587 1.24468 1.58150 1.22435 1.10373 1.02136 1.32671 0.91786 1.25526 1.00476 0.95864 0.93910 1.70011 1.35489 1.19412 1.30374 0.85893 0.80034 0.81462 0.79145 1.18854 1.18200 1.16103 1.22193 0.97451 0.88055 0.94499 0.88347 0.87471 0.90370 0.91327 0.92134 0.91873 0.92057 0.86836 0.86337 0.91880 0.89908 0.87754 0.87320 0.88405 0.88600 0.89670 0.87124 0.86609 0.91345 0.90792 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.76 13.89 67.78 0.94 -0.82 16 2 C -0.13 -1.33 5.31 -16.48 -0.09 -1.41 16 3 C -0.12 -0.97 10.03 71.24 0.71 -0.25 16 4 C -0.07 -0.89 4.67 29.85 0.14 -0.75 16 5 C -0.12 -1.17 4.23 29.85 0.13 -1.04 16 6 C 0.51 8.52 7.67 87.65 0.67 9.20 16 7 O -0.58 -14.87 15.35 -3.04 -0.05 -14.92 16 8 N -0.61 -8.35 2.88 -815.96 -2.35 -10.70 16 9 C 0.06 0.47 9.02 127.77 1.15 1.63 16 10 C 0.14 2.28 3.35 46.18 0.15 2.43 16 11 H 0.10 2.12 6.99 -2.38 -0.02 2.10 16 12 C -0.13 -1.56 6.64 32.06 0.21 -1.35 16 13 C 0.09 1.54 6.69 86.92 0.58 2.12 16 14 N -0.61 -15.69 3.33 -811.37 -2.70 -18.39 16 15 C 0.55 19.57 7.87 87.66 0.69 20.26 16 16 O -0.56 -24.85 16.19 -3.04 -0.05 -24.90 16 17 C -0.10 -3.85 5.16 71.24 0.37 -3.48 16 18 S -0.18 -8.91 18.55 -56.49 -1.05 -9.96 16 19 C -0.53 -30.57 10.04 67.95 0.68 -29.89 16 20 H 0.06 3.89 8.03 -2.92 -0.02 3.86 16 21 C 0.05 2.79 5.50 84.86 0.47 3.26 16 22 N -0.92 -55.29 13.97 21.65 0.30 -54.99 16 23 Si 0.91 44.83 27.74 68.60 1.90 46.74 16 24 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.24 -11.63 6.74 99.48 0.67 -10.96 16 27 C 0.10 2.29 6.50 86.73 0.56 2.85 16 28 H 0.10 0.85 7.99 -2.91 -0.02 0.83 16 29 H 0.11 0.75 8.04 -2.91 -0.02 0.73 16 30 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.47 8.06 -2.38 -0.02 0.45 16 32 H 0.06 0.53 8.09 -2.39 -0.02 0.51 16 33 H 0.06 0.96 7.94 -2.39 -0.02 0.94 16 34 H 0.06 0.97 8.06 -2.39 -0.02 0.95 16 35 H 0.11 0.72 8.11 -2.39 -0.02 0.70 16 36 H 0.12 0.60 7.40 -2.39 -0.02 0.58 16 37 H 0.06 0.50 7.86 -2.39 -0.02 0.48 16 38 H 0.08 0.59 6.25 -2.39 -0.01 0.57 16 39 H 0.10 0.22 6.44 -2.38 -0.02 0.21 16 40 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.10 0.97 6.26 -2.38 -0.01 0.95 16 42 H 0.10 1.50 7.48 -2.39 -0.02 1.48 16 43 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 45 H 0.12 3.95 7.85 -2.39 -0.02 3.93 16 46 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 47 H 0.07 1.65 6.81 -2.38 -0.02 1.64 16 48 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -79.06 402.20 4.29 -74.78 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.90 Total: 9.59 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 7.38 Total: 2.75 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -4.75 Total: -84.08 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -0.10 Total: -39.82 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.74 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.05 Total: -9.96 kcal Total: -79.06 4.29 -74.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720351892.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.615 kcal (2) G-P(sol) polarization free energy of solvation -79.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds