Wall clock time and date at job start Sat Apr 11 2020 06:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47038 * 2 1 4 4 C 1.32996 * 119.99797 * 120.59152 * 3 2 1 5 5 C 1.50706 * 119.99533 * 185.42099 * 4 3 2 6 6 C 1.47098 * 120.00159 * 5.42143 * 4 3 2 7 7 O 1.21617 * 119.99860 * 255.95025 * 6 4 3 8 8 N 1.34776 * 119.99992 * 75.95748 * 6 4 3 9 9 C 1.46499 * 119.99947 * 5.56529 * 8 6 4 10 10 C 1.46501 * 119.99985 * 185.57404 * 8 6 4 11 11 H 1.09001 * 110.88459 * 0.68934 * 10 8 6 12 12 C 1.55157 * 111.00101 * 236.81434 * 10 8 6 13 13 C 1.54369 * 102.92117 * 206.45056 * 12 10 8 14 14 N 1.47020 * 107.28881 * 22.13991 * 13 12 10 15 15 C 1.34779 * 125.65154 * 181.12918 * 14 13 12 16 16 O 1.21278 * 120.00114 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.99788 * 359.95697 * 15 14 13 18 18 S 1.80996 * 109.47121 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00047 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99723 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99811 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00083 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99854 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46955 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47087 * 119.99695 * 23 21 19 26 26 H 1.48495 * 109.46936 * 239.99989 * 23 21 19 27 27 C 1.47432 * 108.70301 * 1.09063 * 14 13 12 28 28 H 1.08999 * 109.46911 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47099 * 300.00350 * 1 2 3 30 30 H 1.09002 * 109.46616 * 60.00614 * 1 2 3 31 31 H 1.08998 * 109.47287 * 119.99651 * 2 1 3 32 32 H 1.08997 * 109.47543 * 239.99941 * 2 1 3 33 33 H 1.07997 * 119.99728 * 300.59050 * 3 2 1 34 34 H 1.08994 * 109.46542 * 94.98787 * 5 4 3 35 35 H 1.08999 * 109.47020 * 214.98467 * 5 4 3 36 36 H 1.08997 * 109.47118 * 334.98608 * 5 4 3 37 37 H 1.09001 * 109.47119 * 94.81754 * 9 8 6 38 38 H 1.09004 * 109.47306 * 214.81554 * 9 8 6 39 39 H 1.08998 * 109.47280 * 334.81545 * 9 8 6 40 40 H 1.08999 * 110.72002 * 324.78328 * 12 10 8 41 41 H 1.09006 * 110.72154 * 88.05848 * 12 10 8 42 42 H 1.08999 * 109.84837 * 262.73491 * 13 12 10 43 43 H 1.08996 * 110.03054 * 141.64952 * 13 12 10 44 44 H 1.08997 * 109.46923 * 299.99952 * 17 15 14 45 45 H 1.09002 * 109.46968 * 59.99945 * 17 15 14 46 46 H 0.96999 * 120.00161 * 180.02562 * 22 21 19 47 47 H 1.09001 * 110.36564 * 217.03546 * 27 14 13 48 48 H 1.09002 * 110.45906 * 94.75963 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8066 1.8524 0.9915 5 6 3.2085 3.3034 1.0567 6 6 3.2706 0.9135 2.0244 7 8 2.7575 0.9202 3.1270 8 7 4.2645 0.0458 1.7489 9 6 4.9650 0.1184 0.4643 10 6 4.6441 -0.9699 2.7339 11 1 4.0219 -0.8978 3.6260 12 6 6.1490 -0.8593 3.0951 13 6 6.5064 -2.2969 3.5292 14 7 5.5113 -3.1956 2.9262 15 6 5.4633 -4.5333 3.0838 16 8 4.5934 -5.1774 2.5369 17 6 6.4908 -5.2285 3.9393 18 16 6.1607 -7.0081 3.9523 19 6 7.4712 -7.5548 4.9955 20 1 8.1684 -6.8396 5.4063 21 6 7.6074 -8.9045 5.2892 22 7 6.7573 -9.7760 4.7888 23 14 8.9963 -9.4840 6.3957 24 1 9.8071 -8.3164 6.8251 25 1 8.4287 -10.1593 7.5902 26 1 9.8577 -10.4371 5.6509 27 6 4.5740 -2.3910 2.1214 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.7635 2.0886 -0.8051 34 1 2.5199 3.8422 1.7074 35 1 4.2206 3.3826 1.4537 36 1 3.1759 3.7348 0.0562 37 1 5.8679 0.7188 0.5762 38 1 5.2350 -0.8868 0.1403 39 1 4.3136 0.5771 -0.2795 40 1 6.7338 -0.5631 2.2242 41 1 6.2979 -0.1592 3.9172 42 1 6.4671 -2.3760 4.6156 43 1 7.5038 -2.5569 3.1746 44 1 7.4854 -5.0468 3.5322 45 1 6.4383 -4.8414 4.9569 46 1 6.8522 -10.7192 4.9943 47 1 3.5632 -2.7905 2.2043 48 1 4.8885 -2.3703 1.0779 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720352341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:31 Heat of formation + Delta-G solvation = -52.573833 kcal Electronic energy + Delta-G solvation = -27309.471389 eV Core-core repulsion = 23491.149135 eV Total energy + Delta-G solvation = -3818.322255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.85653 -39.53713 -37.46688 -36.23063 -35.12540 -32.64670 -32.43460 -31.21736 -29.73365 -28.32444 -27.45352 -27.19063 -25.50527 -24.19228 -23.13972 -22.38946 -20.51345 -19.43953 -18.81323 -17.75639 -17.38353 -16.69759 -16.35857 -16.00952 -15.57654 -15.12165 -14.83995 -14.80611 -14.42380 -14.21804 -13.89156 -13.85527 -13.83243 -13.55925 -13.19512 -13.13904 -12.96588 -12.74192 -12.69989 -12.60439 -12.54175 -12.35922 -12.00880 -11.87936 -11.67305 -11.45402 -11.34813 -11.07847 -11.02482 -11.01951 -10.76659 -10.20502 -9.81612 -9.47076 -9.34549 -9.08606 -9.07541 -8.52926 -8.23994 -6.51114 -6.22281 -3.92985 1.28726 2.24717 2.47657 2.97631 3.03793 3.21312 3.26427 3.31161 3.60572 4.04145 4.18853 4.25446 4.29677 4.39957 4.63657 4.65409 4.74736 4.91340 4.91877 4.94174 4.98666 5.01571 5.04980 5.11657 5.13006 5.18463 5.25661 5.32010 5.43058 5.46111 5.49578 5.58457 5.59137 5.63986 5.69874 5.74020 5.77819 5.80156 5.91726 5.93873 6.07904 6.12835 6.15501 6.36553 6.94449 7.58744 7.60631 7.76870 8.34959 8.50967 9.23103 10.85219 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024368 B = 0.002093 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.749877 B =13377.220585 C =14072.477944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.111 4.111 4 C -0.165 4.165 5 C -0.102 4.102 6 C 0.562 3.438 7 O -0.532 6.532 8 N -0.601 5.601 9 C 0.069 3.931 10 C 0.127 3.873 11 H 0.118 0.882 12 C -0.139 4.139 13 C 0.104 3.896 14 N -0.625 5.625 15 C 0.550 3.450 16 O -0.513 6.513 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.100 3.900 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.268 0.732 47 H 0.082 0.918 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.284 27.928 -11.365 30.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.130 4.130 4 C -0.168 4.168 5 C -0.159 4.159 6 C 0.351 3.649 7 O -0.409 6.409 8 N -0.334 5.334 9 C -0.073 4.073 10 C 0.022 3.978 11 H 0.136 0.864 12 C -0.178 4.178 13 C -0.020 4.020 14 N -0.363 5.363 15 C 0.339 3.661 16 O -0.387 6.387 17 C -0.296 4.296 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.024 4.024 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.144 0.856 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.100 0.900 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.901 26.678 -11.584 29.677 hybrid contribution 2.050 0.395 1.260 2.439 sum -3.851 27.073 -10.324 29.230 Atomic orbital electron populations 1.21665 0.94206 1.02325 1.02064 1.20803 0.97018 0.93658 1.03030 1.23421 0.95544 0.97713 0.96276 1.21462 1.02675 0.96576 0.96063 1.20659 1.01923 0.90508 1.02856 1.18551 0.78730 0.79959 0.87677 1.90833 1.56467 1.70139 1.23427 1.47662 1.35497 1.32489 1.17723 1.21913 0.97493 1.03256 0.84675 1.22242 0.96457 0.86332 0.92739 0.86428 1.22993 0.95578 0.96500 1.02741 1.21985 0.92871 0.88244 0.98881 1.48384 1.30817 1.05942 1.51162 1.20058 0.85745 0.79412 0.80915 1.90714 1.36636 1.63593 1.47760 1.23501 0.99912 1.05069 1.01168 1.85413 1.41197 0.91441 1.65400 1.22893 1.15296 0.95424 1.34601 0.90857 1.25002 0.96874 0.95595 0.96173 1.70028 1.35259 1.02519 1.42451 0.86107 0.80868 0.78698 0.79765 1.19610 1.20551 1.20571 1.22369 0.95391 0.89446 0.95218 0.92016 0.92437 0.92443 0.91360 0.90322 0.85562 0.90650 0.91716 0.90955 0.92161 0.90538 0.90158 0.90002 0.89458 0.90851 0.90812 0.89230 0.89185 0.92225 0.89984 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.11 -0.80 6.18 -27.88 -0.17 -0.97 16 3 C -0.11 -0.70 8.08 -36.12 -0.29 -1.00 16 4 C -0.16 -1.27 4.32 -102.84 -0.44 -1.71 16 5 C -0.10 -0.58 10.04 36.01 0.36 -0.22 16 6 C 0.56 5.96 5.16 -12.67 -0.07 5.90 16 7 O -0.53 -7.89 16.50 5.26 0.09 -7.80 16 8 N -0.60 -5.27 2.78 -172.87 -0.48 -5.75 16 9 C 0.07 0.40 9.32 59.85 0.56 0.96 16 10 C 0.13 1.29 3.45 -65.78 -0.23 1.06 16 11 H 0.12 1.45 7.02 -51.93 -0.36 1.09 16 12 C -0.14 -1.15 6.53 -24.87 -0.16 -1.31 16 13 C 0.10 1.09 6.49 -3.04 -0.02 1.07 16 14 N -0.62 -9.00 3.33 -170.49 -0.57 -9.56 16 15 C 0.55 10.67 7.87 -10.98 -0.09 10.58 16 16 O -0.51 -11.98 16.12 5.56 0.09 -11.89 16 17 C -0.15 -3.00 5.35 36.01 0.19 -2.81 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.23 9.50 30.94 0.29 -14.93 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 23 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C 0.10 1.22 6.48 -2.53 -0.02 1.20 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.66 6.20 -51.93 -0.32 0.34 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.13 0.53 8.00 -52.49 -0.42 0.11 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.26 7.99 -51.93 -0.42 -0.16 16 37 H 0.06 0.27 7.90 -51.93 -0.41 -0.14 16 38 H 0.08 0.44 6.10 -51.93 -0.32 0.12 16 39 H 0.08 0.38 5.76 -51.93 -0.30 0.08 16 40 H 0.08 0.56 7.05 -51.93 -0.37 0.19 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 45 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.08 1.15 8.04 -51.93 -0.42 0.74 16 48 H 0.07 0.76 6.07 -51.93 -0.32 0.45 16 LS Contribution 403.35 15.07 6.08 6.08 Total: -1.00 -36.58 403.35 -8.94 -45.53 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -7.84 Total: -2.80 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 0.19 Total: -0.84 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -0.31 Total: -40.80 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.18 Total: -19.70 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.58 -8.94 -45.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720352341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.046 kcal (2) G-P(sol) polarization free energy of solvation -36.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds