Wall clock time and date at job start Sat Apr 11 2020 06:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47038 * 2 1 4 4 C 1.32996 * 119.99797 * 120.59152 * 3 2 1 5 5 C 1.50706 * 119.99533 * 185.42099 * 4 3 2 6 6 C 1.47098 * 120.00159 * 5.42143 * 4 3 2 7 7 O 1.21617 * 119.99860 * 255.95025 * 6 4 3 8 8 N 1.34776 * 119.99992 * 75.95748 * 6 4 3 9 9 C 1.46499 * 119.99947 * 5.56529 * 8 6 4 10 10 C 1.46501 * 119.99985 * 185.57404 * 8 6 4 11 11 H 1.09001 * 110.88459 * 0.68934 * 10 8 6 12 12 C 1.55157 * 111.00101 * 236.81434 * 10 8 6 13 13 C 1.54369 * 102.92117 * 206.45056 * 12 10 8 14 14 N 1.47020 * 107.28881 * 22.13991 * 13 12 10 15 15 C 1.34779 * 125.65154 * 181.12918 * 14 13 12 16 16 O 1.21278 * 120.00114 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.99788 * 359.95697 * 15 14 13 18 18 S 1.80996 * 109.47121 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00047 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99723 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99811 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00083 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99854 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46955 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47087 * 119.99695 * 23 21 19 26 26 H 1.48495 * 109.46936 * 239.99989 * 23 21 19 27 27 C 1.47432 * 108.70301 * 1.09063 * 14 13 12 28 28 H 1.08999 * 109.46911 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47099 * 300.00350 * 1 2 3 30 30 H 1.09002 * 109.46616 * 60.00614 * 1 2 3 31 31 H 1.08998 * 109.47287 * 119.99651 * 2 1 3 32 32 H 1.08997 * 109.47543 * 239.99941 * 2 1 3 33 33 H 1.07997 * 119.99728 * 300.59050 * 3 2 1 34 34 H 1.08994 * 109.46542 * 94.98787 * 5 4 3 35 35 H 1.08999 * 109.47020 * 214.98467 * 5 4 3 36 36 H 1.08997 * 109.47118 * 334.98608 * 5 4 3 37 37 H 1.09001 * 109.47119 * 94.81754 * 9 8 6 38 38 H 1.09004 * 109.47306 * 214.81554 * 9 8 6 39 39 H 1.08998 * 109.47280 * 334.81545 * 9 8 6 40 40 H 1.08999 * 110.72002 * 324.78328 * 12 10 8 41 41 H 1.09006 * 110.72154 * 88.05848 * 12 10 8 42 42 H 1.08999 * 109.84837 * 262.73491 * 13 12 10 43 43 H 1.08996 * 110.03054 * 141.64952 * 13 12 10 44 44 H 1.08997 * 109.46923 * 299.99952 * 17 15 14 45 45 H 1.09002 * 109.46968 * 59.99945 * 17 15 14 46 46 H 0.96999 * 120.00161 * 180.02562 * 22 21 19 47 47 H 1.09001 * 110.36564 * 217.03546 * 27 14 13 48 48 H 1.09002 * 110.45906 * 94.75963 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8066 1.8524 0.9915 5 6 3.2085 3.3034 1.0567 6 6 3.2706 0.9135 2.0244 7 8 2.7575 0.9202 3.1270 8 7 4.2645 0.0458 1.7489 9 6 4.9650 0.1184 0.4643 10 6 4.6441 -0.9699 2.7339 11 1 4.0219 -0.8978 3.6260 12 6 6.1490 -0.8593 3.0951 13 6 6.5064 -2.2969 3.5292 14 7 5.5113 -3.1956 2.9262 15 6 5.4633 -4.5333 3.0838 16 8 4.5934 -5.1774 2.5369 17 6 6.4908 -5.2285 3.9393 18 16 6.1607 -7.0081 3.9523 19 6 7.4712 -7.5548 4.9955 20 1 8.1684 -6.8396 5.4063 21 6 7.6074 -8.9045 5.2892 22 7 6.7573 -9.7760 4.7888 23 14 8.9963 -9.4840 6.3957 24 1 9.8071 -8.3164 6.8251 25 1 8.4287 -10.1593 7.5902 26 1 9.8577 -10.4371 5.6509 27 6 4.5740 -2.3910 2.1214 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.7635 2.0886 -0.8051 34 1 2.5199 3.8422 1.7074 35 1 4.2206 3.3826 1.4537 36 1 3.1759 3.7348 0.0562 37 1 5.8679 0.7188 0.5762 38 1 5.2350 -0.8868 0.1403 39 1 4.3136 0.5771 -0.2795 40 1 6.7338 -0.5631 2.2242 41 1 6.2979 -0.1592 3.9172 42 1 6.4671 -2.3760 4.6156 43 1 7.5038 -2.5569 3.1746 44 1 7.4854 -5.0468 3.5322 45 1 6.4383 -4.8414 4.9569 46 1 6.8522 -10.7192 4.9943 47 1 3.5632 -2.7905 2.2043 48 1 4.8885 -2.3703 1.0779 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720352341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:29 Heat of formation + Delta-G solvation = -76.315306 kcal Electronic energy + Delta-G solvation = -27310.500897 eV Core-core repulsion = 23491.149135 eV Total energy + Delta-G solvation = -3819.351762 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.72787 -40.73748 -38.66692 -36.91887 -36.03039 -34.59791 -33.24409 -32.37210 -30.92065 -29.43857 -27.97454 -27.86275 -27.63878 -25.14078 -23.98695 -23.02944 -21.32114 -20.81082 -19.65389 -19.51308 -18.28813 -18.08503 -17.18984 -16.90069 -16.79077 -16.74347 -16.40294 -15.75544 -15.52091 -15.43544 -15.03922 -14.74916 -14.45997 -14.42562 -14.15074 -14.09036 -13.85216 -13.78013 -13.69563 -13.43753 -13.26216 -13.20906 -13.16442 -12.92313 -12.91286 -12.80935 -12.62380 -12.55508 -12.04457 -11.91562 -11.81632 -11.72968 -11.16888 -11.08633 -10.98010 -10.29871 -9.99522 -9.85677 -9.63085 -8.69826 -8.35912 -6.14740 0.72796 1.19364 1.41181 1.41749 1.47560 1.49928 1.55466 1.79291 2.18903 2.25977 2.98399 3.17674 3.35289 3.41218 3.57343 3.80365 3.85173 3.89930 4.02679 4.07863 4.14539 4.24165 4.30091 4.35889 4.42094 4.47469 4.50767 4.54040 4.61554 4.71870 4.72171 4.75970 4.79454 4.86903 4.95827 4.97296 5.05333 5.06342 5.16251 5.18736 5.24718 5.37177 5.41104 5.46252 5.63711 6.18974 6.22666 6.28334 6.99475 7.03084 7.05365 8.73671 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024368 B = 0.002093 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.749877 B =13377.220585 C =14072.477944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.095 4.095 4 C -0.180 4.180 5 C -0.098 4.098 6 C 0.557 3.443 7 O -0.587 6.587 8 N -0.595 5.595 9 C 0.063 3.937 10 C 0.133 3.867 11 H 0.090 0.910 12 C -0.122 4.122 13 C 0.094 3.906 14 N -0.615 5.615 15 C 0.548 3.452 16 O -0.565 6.565 17 C -0.118 4.118 18 S -0.153 6.153 19 C -0.543 4.543 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.255 1.255 25 H -0.275 1.275 26 H -0.273 1.273 27 C 0.101 3.899 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.094 0.906 33 H 0.159 0.841 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.271 0.729 47 H 0.053 0.947 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.923 30.710 -12.320 33.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.113 4.113 4 C -0.182 4.182 5 C -0.155 4.155 6 C 0.348 3.652 7 O -0.468 6.468 8 N -0.326 5.326 9 C -0.078 4.078 10 C 0.027 3.973 11 H 0.108 0.892 12 C -0.161 4.161 13 C -0.028 4.028 14 N -0.351 5.351 15 C 0.336 3.664 16 O -0.444 6.444 17 C -0.269 4.269 18 S 0.075 5.925 19 C -0.691 4.691 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.179 1.179 25 H -0.200 1.200 26 H -0.198 1.198 27 C -0.023 4.023 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.177 0.823 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.130 0.870 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.502 29.526 -12.567 32.280 hybrid contribution 1.244 -0.371 1.487 1.974 sum -2.258 29.155 -11.079 31.271 Atomic orbital electron populations 1.21659 0.94087 1.02075 1.02389 1.20828 0.97175 0.94577 1.02266 1.23617 0.94020 0.97238 0.96450 1.21509 1.04050 0.97074 0.95617 1.20683 1.01589 0.88899 1.04345 1.19159 0.78238 0.80220 0.87603 1.90801 1.58252 1.71847 1.25853 1.47718 1.35170 1.31287 1.18427 1.22168 0.98339 1.04007 0.83257 1.21977 0.97727 0.85496 0.92073 0.89179 1.22966 0.93648 0.95161 1.04280 1.22354 0.92625 0.88648 0.99198 1.48273 1.31611 1.04802 1.50394 1.19823 0.84980 0.80934 0.80635 1.90693 1.38463 1.65269 1.49951 1.23289 1.01313 0.99660 1.02670 1.85617 1.42614 0.98282 1.66035 1.23214 1.15220 0.96128 1.34556 0.89792 1.26160 0.99765 0.95656 0.97698 1.70193 1.37505 1.02995 1.44121 0.84878 0.77098 0.78504 0.77299 1.17904 1.20028 1.19831 1.22466 0.93571 0.90129 0.96124 0.92667 0.93876 0.90259 0.94398 0.88781 0.82330 0.91528 0.91698 0.88182 0.89913 0.90275 0.88868 0.87449 0.88004 0.90346 0.88828 0.87011 0.87569 0.91976 0.92802 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.89 71.98 0.71 -1.26 16 2 C -0.11 -1.54 6.18 29.85 0.18 -1.35 16 3 C -0.09 -0.98 8.08 24.52 0.20 -0.78 16 4 C -0.18 -2.47 4.32 -18.70 -0.08 -2.55 16 5 C -0.10 -0.88 10.04 71.24 0.72 -0.16 16 6 C 0.56 11.70 5.16 86.57 0.45 12.15 16 7 O -0.59 -18.21 16.50 -4.08 -0.07 -18.28 16 8 N -0.59 -9.76 2.78 -819.09 -2.28 -12.03 16 9 C 0.06 0.55 9.32 127.77 1.19 1.74 16 10 C 0.13 2.62 3.45 46.38 0.16 2.78 16 11 H 0.09 2.33 7.02 -2.39 -0.02 2.31 16 12 C -0.12 -1.66 6.53 31.80 0.21 -1.45 16 13 C 0.09 1.74 6.49 86.74 0.56 2.30 16 14 N -0.62 -17.32 3.33 -811.70 -2.70 -20.02 16 15 C 0.55 21.52 7.87 87.66 0.69 22.21 16 16 O -0.57 -27.61 16.12 -3.02 -0.05 -27.66 16 17 C -0.12 -4.83 5.35 71.24 0.38 -4.45 16 18 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 19 C -0.54 -31.16 9.50 67.96 0.65 -30.52 16 20 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 21 C 0.01 0.68 5.49 84.86 0.47 1.14 16 22 N -0.91 -56.36 13.22 21.65 0.29 -56.07 16 23 Si 1.00 43.70 29.55 68.60 2.03 45.72 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 C 0.10 2.46 6.48 86.85 0.56 3.02 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.04 0.76 6.20 -2.39 -0.01 0.74 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.16 0.66 8.00 -2.91 -0.02 0.64 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.10 0.33 7.99 -2.39 -0.02 0.31 16 37 H 0.08 0.41 7.90 -2.39 -0.02 0.39 16 38 H 0.08 0.67 6.10 -2.38 -0.01 0.65 16 39 H 0.09 0.60 5.76 -2.39 -0.01 0.58 16 40 H 0.11 0.98 7.05 -2.39 -0.02 0.96 16 41 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 45 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 46 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 47 H 0.05 1.62 8.04 -2.39 -0.02 1.60 16 48 H 0.09 1.85 6.07 -2.39 -0.01 1.83 16 Total: -1.00 -85.21 403.35 4.04 -81.17 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.94 Total: 14.13 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 7.04 Total: 2.82 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -4.69 Total: -88.12 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -0.12 Total: -45.94 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -85.21 4.04 -81.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720352341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.856 kcal (2) G-P(sol) polarization free energy of solvation -85.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds