Wall clock time and date at job start Sat Apr 11 2020 06:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46972 * 2 1 4 4 C 1.32995 * 119.99890 * 118.41667 * 3 2 1 5 5 C 1.50700 * 119.99977 * 354.38387 * 4 3 2 6 6 C 1.47098 * 120.00020 * 174.38799 * 4 3 2 7 7 O 1.21619 * 120.00119 * 7.21572 * 6 4 3 8 8 N 1.34775 * 120.00378 * 187.21877 * 6 4 3 9 9 C 1.46503 * 119.99877 * 6.89604 * 8 6 4 10 10 C 1.46494 * 120.00394 * 186.89244 * 8 6 4 11 11 H 1.08999 * 110.89113 * 2.42796 * 10 8 6 12 12 C 1.55164 * 111.00600 * 126.35120 * 10 8 6 13 13 C 1.54323 * 102.94374 * 153.57724 * 12 10 8 14 14 N 1.47022 * 107.27166 * 337.80776 * 13 12 10 15 15 C 1.34777 * 125.64627 * 178.97836 * 14 13 12 16 16 O 1.21278 * 119.99813 * 179.97438 * 15 14 13 17 17 C 1.50695 * 120.00179 * 359.95626 * 15 14 13 18 18 S 1.80997 * 109.47284 * 180.02562 * 17 15 14 19 19 C 1.76197 * 100.00198 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99970 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00088 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00218 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99872 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47180 * 60.00029 * 23 21 19 25 25 H 1.48507 * 109.47106 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47649 * 299.99593 * 23 21 19 27 27 C 1.47426 * 108.70264 * 358.93853 * 14 13 12 28 28 H 1.08997 * 109.46965 * 60.00220 * 1 2 3 29 29 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47636 * 299.99829 * 1 2 3 31 31 H 1.08995 * 109.47140 * 239.99595 * 2 1 3 32 32 H 1.09005 * 109.46839 * 120.00091 * 2 1 3 33 33 H 1.08001 * 120.00313 * 298.41764 * 3 2 1 34 34 H 1.09003 * 109.46803 * 213.21985 * 5 4 3 35 35 H 1.08992 * 109.47263 * 333.21978 * 5 4 3 36 36 H 1.09002 * 109.47008 * 93.22739 * 5 4 3 37 37 H 1.09001 * 109.46807 * 272.77485 * 9 8 6 38 38 H 1.08999 * 109.47301 * 32.76763 * 9 8 6 39 39 H 1.08995 * 109.47626 * 152.77635 * 9 8 6 40 40 H 1.09003 * 110.71882 * 271.93930 * 12 10 8 41 41 H 1.08996 * 110.71776 * 35.03425 * 12 10 8 42 42 H 1.09001 * 109.88198 * 97.22767 * 13 12 10 43 43 H 1.09002 * 109.88034 * 218.23281 * 13 12 10 44 44 H 1.09007 * 109.47013 * 299.99982 * 17 15 14 45 45 H 1.08998 * 109.47060 * 59.99773 * 17 15 14 46 46 H 0.96993 * 120.00031 * 180.02562 * 22 21 19 47 47 H 1.08999 * 110.36911 * 265.29218 * 27 14 13 48 48 H 1.09000 * 110.36474 * 142.96565 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.7707 1.8650 1.0130 5 6 2.9996 0.9906 2.2189 6 6 3.3639 3.2099 0.9564 7 8 3.0742 3.9646 0.0478 8 7 4.2286 3.6059 1.9115 9 6 4.6945 2.6503 2.9195 10 6 4.7026 4.9916 1.9416 11 1 4.2317 5.5807 1.1546 12 6 4.4633 5.6312 3.3349 13 6 5.5595 6.7148 3.4107 14 7 6.6195 6.3301 2.4674 15 6 7.7460 7.0289 2.2241 16 8 8.5554 6.6143 1.4217 17 6 7.9997 8.3256 2.9488 18 16 9.5820 9.0190 2.4089 19 6 9.6226 10.4852 3.3852 20 1 8.8084 10.7082 4.0588 21 6 10.7005 11.3542 3.2878 22 7 11.6922 11.0833 2.4657 23 14 10.7431 12.9090 4.3223 24 1 10.7032 12.5469 5.7619 25 1 11.9918 13.6601 4.0358 26 1 9.5688 13.7558 3.9921 27 6 6.2466 5.0529 1.8324 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.7927 2.0783 -0.8226 34 1 3.0695 1.6131 3.1110 35 1 2.1679 0.2944 2.3259 36 1 3.9271 0.4322 2.0920 37 1 3.9949 2.6338 3.7552 38 1 4.7552 1.6560 2.4770 39 1 5.6798 2.9500 3.2764 40 1 3.4719 6.0813 3.3875 41 1 4.5922 4.8922 4.1256 42 1 5.1446 7.6822 3.1278 43 1 5.9611 6.7655 4.4228 44 1 7.1990 9.0302 2.7239 45 1 8.0307 8.1415 4.0227 46 1 12.4456 11.6904 2.3979 47 1 6.6982 4.2173 2.3672 48 1 6.5535 5.0454 0.7866 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720352343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:42 Heat of formation + Delta-G solvation = -25.171703 kcal Electronic energy + Delta-G solvation = -26843.904577 eV Core-core repulsion = 23026.770568 eV Total energy + Delta-G solvation = -3817.134009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.86705 -39.52648 -37.50201 -36.61885 -35.47340 -32.55052 -32.42230 -30.94798 -29.71322 -28.79682 -27.86864 -26.51078 -25.49893 -24.65002 -23.36241 -21.99866 -20.00893 -19.39072 -18.89458 -17.73349 -17.32671 -16.88251 -16.53512 -16.04544 -15.81443 -15.14103 -14.85843 -14.79745 -14.57199 -14.25497 -14.05716 -13.91751 -13.84864 -13.72160 -13.47780 -13.15984 -12.90457 -12.67326 -12.60519 -12.56504 -12.53290 -11.97774 -11.85788 -11.77604 -11.64147 -11.44529 -11.13368 -11.03787 -11.03479 -10.92225 -10.76867 -10.09958 -9.82493 -9.52569 -9.44410 -9.05381 -8.96850 -8.50560 -8.23554 -6.49973 -6.20824 -3.91819 0.97820 2.44196 2.87909 2.98982 3.05500 3.23984 3.26866 3.29954 3.61847 4.02535 4.20276 4.27176 4.35666 4.40420 4.54799 4.57952 4.68501 4.70157 4.79251 4.90669 4.93843 5.01874 5.06470 5.08575 5.14138 5.16428 5.22583 5.25401 5.39949 5.44915 5.49371 5.49639 5.52964 5.60786 5.65644 5.66942 5.77679 5.79523 5.92895 5.95739 6.07890 6.13289 6.18798 6.39884 7.01722 7.59428 7.62542 7.83450 8.35539 8.53132 9.24130 10.86565 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.036873 B = 0.001788 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.182390 B =15654.691945 C =15812.803178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.068 4.068 4 C -0.188 4.188 5 C -0.138 4.138 6 C 0.557 3.443 7 O -0.539 6.539 8 N -0.601 5.601 9 C 0.053 3.947 10 C 0.128 3.872 11 H 0.117 0.883 12 C -0.140 4.140 13 C 0.104 3.896 14 N -0.625 5.625 15 C 0.550 3.450 16 O -0.513 6.513 17 C -0.146 4.146 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.100 3.900 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.069 0.931 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.156 -23.652 2.874 33.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.087 4.087 4 C -0.191 4.191 5 C -0.194 4.194 6 C 0.348 3.652 7 O -0.417 6.417 8 N -0.334 5.334 9 C -0.089 4.089 10 C 0.023 3.977 11 H 0.135 0.865 12 C -0.179 4.179 13 C -0.019 4.019 14 N -0.363 5.363 15 C 0.338 3.662 16 O -0.387 6.387 17 C -0.297 4.297 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.024 4.024 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.144 0.856 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.825 -23.751 1.123 32.275 hybrid contribution -0.867 1.553 1.723 2.477 sum -22.692 -22.198 2.846 31.871 Atomic orbital electron populations 1.21702 0.94435 1.02039 1.02433 1.20926 0.96729 0.93467 1.03559 1.23617 0.91787 0.96614 0.96710 1.21324 1.03786 0.95062 0.98892 1.21688 1.02069 0.99216 0.96409 1.18506 0.78426 0.87289 0.81008 1.90805 1.61735 1.55398 1.33797 1.47491 1.45534 1.10396 1.29933 1.22791 1.00074 0.94270 0.91760 1.22233 0.94145 0.82368 0.98933 0.86461 1.22998 0.99407 0.98313 0.97139 1.21963 0.87658 0.98282 0.94043 1.48387 1.20909 1.23396 1.43651 1.20053 0.79130 0.84881 0.82098 1.90716 1.44069 1.69438 1.34487 1.23505 1.07251 0.96041 1.02883 1.85413 1.16020 1.25184 1.56725 1.22820 1.09295 1.08047 1.28282 0.90960 1.24988 0.94605 0.98286 0.95644 1.70009 1.08324 1.37016 1.34910 0.86222 0.77666 0.81504 0.80086 1.19948 1.20796 1.19930 1.22389 0.93399 0.86839 0.99797 0.92290 0.92154 0.92462 0.89989 0.90240 0.85591 0.89491 0.91280 0.90580 0.91721 0.88678 0.90911 0.89513 0.90008 0.90849 0.90825 0.89193 0.89238 0.92117 0.91325 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.89 37.16 0.37 -0.26 16 2 C -0.11 -0.51 6.08 -27.88 -0.17 -0.68 16 3 C -0.07 -0.49 9.09 -36.13 -0.33 -0.82 16 4 C -0.19 -1.45 5.87 -102.85 -0.60 -2.05 16 5 C -0.14 -0.59 7.25 36.01 0.26 -0.33 16 6 C 0.56 6.08 7.59 -12.67 -0.10 5.98 16 7 O -0.54 -8.04 15.65 5.26 0.08 -7.96 16 8 N -0.60 -5.45 2.91 -172.87 -0.50 -5.95 16 9 C 0.05 0.29 7.33 59.85 0.44 0.73 16 10 C 0.13 1.34 3.44 -65.78 -0.23 1.12 16 11 H 0.12 1.48 7.04 -51.93 -0.37 1.12 16 12 C -0.14 -1.15 6.51 -24.89 -0.16 -1.31 16 13 C 0.10 1.11 6.49 -3.06 -0.02 1.09 16 14 N -0.63 -9.24 3.33 -170.52 -0.57 -9.81 16 15 C 0.55 10.87 7.87 -10.99 -0.09 10.78 16 16 O -0.51 -12.24 16.12 5.56 0.09 -12.15 16 17 C -0.15 -3.04 5.35 36.00 0.19 -2.85 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 20 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 23 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.10 1.28 6.47 -2.53 -0.02 1.27 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.29 5.48 -51.93 -0.28 0.00 16 33 H 0.13 1.10 7.51 -52.49 -0.39 0.70 16 34 H 0.09 0.32 4.62 -51.93 -0.24 0.08 16 35 H 0.07 0.23 6.11 -51.93 -0.32 -0.08 16 36 H 0.08 0.25 6.70 -51.93 -0.35 -0.10 16 37 H 0.06 0.24 6.57 -51.93 -0.34 -0.10 16 38 H 0.10 0.41 4.36 -51.93 -0.23 0.18 16 39 H 0.07 0.41 6.33 -51.93 -0.33 0.08 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.54 7.10 -51.93 -0.37 0.18 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 45 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 47 H 0.07 0.80 6.30 -51.93 -0.33 0.47 16 48 H 0.08 1.24 8.04 -51.93 -0.42 0.83 16 LS Contribution 392.44 15.07 5.91 5.91 Total: -1.00 -37.10 392.44 -9.05 -46.15 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -7.31 Total: -2.82 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -0.25 Total: -0.38 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: -0.34 Total: -41.34 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: 0.17 Total: -20.11 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.10 -9.05 -46.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720352343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.976 kcal (2) G-P(sol) polarization free energy of solvation -37.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds