Wall clock time and date at job start Sat Apr 11 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46972 * 2 1 4 4 C 1.32995 * 119.99890 * 118.41667 * 3 2 1 5 5 C 1.50700 * 119.99977 * 354.38387 * 4 3 2 6 6 C 1.47098 * 120.00020 * 174.38799 * 4 3 2 7 7 O 1.21619 * 120.00119 * 7.21572 * 6 4 3 8 8 N 1.34775 * 120.00378 * 187.21877 * 6 4 3 9 9 C 1.46503 * 119.99877 * 6.89604 * 8 6 4 10 10 C 1.46494 * 120.00394 * 186.89244 * 8 6 4 11 11 H 1.08999 * 110.89113 * 2.42796 * 10 8 6 12 12 C 1.55164 * 111.00600 * 126.35120 * 10 8 6 13 13 C 1.54323 * 102.94374 * 153.57724 * 12 10 8 14 14 N 1.47022 * 107.27166 * 337.80776 * 13 12 10 15 15 C 1.34777 * 125.64627 * 178.97836 * 14 13 12 16 16 O 1.21278 * 119.99813 * 179.97438 * 15 14 13 17 17 C 1.50695 * 120.00179 * 359.95626 * 15 14 13 18 18 S 1.80997 * 109.47284 * 180.02562 * 17 15 14 19 19 C 1.76197 * 100.00198 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99970 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00088 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00218 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99872 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47180 * 60.00029 * 23 21 19 25 25 H 1.48507 * 109.47106 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47649 * 299.99593 * 23 21 19 27 27 C 1.47426 * 108.70264 * 358.93853 * 14 13 12 28 28 H 1.08997 * 109.46965 * 60.00220 * 1 2 3 29 29 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47636 * 299.99829 * 1 2 3 31 31 H 1.08995 * 109.47140 * 239.99595 * 2 1 3 32 32 H 1.09005 * 109.46839 * 120.00091 * 2 1 3 33 33 H 1.08001 * 120.00313 * 298.41764 * 3 2 1 34 34 H 1.09003 * 109.46803 * 213.21985 * 5 4 3 35 35 H 1.08992 * 109.47263 * 333.21978 * 5 4 3 36 36 H 1.09002 * 109.47008 * 93.22739 * 5 4 3 37 37 H 1.09001 * 109.46807 * 272.77485 * 9 8 6 38 38 H 1.08999 * 109.47301 * 32.76763 * 9 8 6 39 39 H 1.08995 * 109.47626 * 152.77635 * 9 8 6 40 40 H 1.09003 * 110.71882 * 271.93930 * 12 10 8 41 41 H 1.08996 * 110.71776 * 35.03425 * 12 10 8 42 42 H 1.09001 * 109.88198 * 97.22767 * 13 12 10 43 43 H 1.09002 * 109.88034 * 218.23281 * 13 12 10 44 44 H 1.09007 * 109.47013 * 299.99982 * 17 15 14 45 45 H 1.08998 * 109.47060 * 59.99773 * 17 15 14 46 46 H 0.96993 * 120.00031 * 180.02562 * 22 21 19 47 47 H 1.08999 * 110.36911 * 265.29218 * 27 14 13 48 48 H 1.09000 * 110.36474 * 142.96565 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.7707 1.8650 1.0130 5 6 2.9996 0.9906 2.2189 6 6 3.3639 3.2099 0.9564 7 8 3.0742 3.9646 0.0478 8 7 4.2286 3.6059 1.9115 9 6 4.6945 2.6503 2.9195 10 6 4.7026 4.9916 1.9416 11 1 4.2317 5.5807 1.1546 12 6 4.4633 5.6312 3.3349 13 6 5.5595 6.7148 3.4107 14 7 6.6195 6.3301 2.4674 15 6 7.7460 7.0289 2.2241 16 8 8.5554 6.6143 1.4217 17 6 7.9997 8.3256 2.9488 18 16 9.5820 9.0190 2.4089 19 6 9.6226 10.4852 3.3852 20 1 8.8084 10.7082 4.0588 21 6 10.7005 11.3542 3.2878 22 7 11.6922 11.0833 2.4657 23 14 10.7431 12.9090 4.3223 24 1 10.7032 12.5469 5.7619 25 1 11.9918 13.6601 4.0358 26 1 9.5688 13.7558 3.9921 27 6 6.2466 5.0529 1.8324 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.7927 2.0783 -0.8226 34 1 3.0695 1.6131 3.1110 35 1 2.1679 0.2944 2.3259 36 1 3.9271 0.4322 2.0920 37 1 3.9949 2.6338 3.7552 38 1 4.7552 1.6560 2.4770 39 1 5.6798 2.9500 3.2764 40 1 3.4719 6.0813 3.3875 41 1 4.5922 4.8922 4.1256 42 1 5.1446 7.6822 3.1278 43 1 5.9611 6.7655 4.4228 44 1 7.1990 9.0302 2.7239 45 1 8.0307 8.1415 4.0227 46 1 12.4456 11.6904 2.3979 47 1 6.6982 4.2173 2.3672 48 1 6.5535 5.0454 0.7866 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720352343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:41 Heat of formation + Delta-G solvation = -49.806545 kcal Electronic energy + Delta-G solvation = -26844.972824 eV Core-core repulsion = 23026.770568 eV Total energy + Delta-G solvation = -3818.202256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.73677 -40.74289 -38.69198 -37.23084 -36.35196 -34.59406 -33.26557 -31.93167 -30.91059 -29.55464 -28.82766 -27.66523 -26.97897 -25.38234 -24.29755 -22.68422 -20.81251 -20.77895 -19.62002 -19.48907 -18.27344 -18.06408 -17.43733 -16.92181 -16.88410 -16.74616 -16.52314 -15.84428 -15.58092 -15.35148 -14.97272 -14.73348 -14.65807 -14.42192 -14.35422 -14.17830 -14.08969 -13.80703 -13.62965 -13.39040 -13.17403 -13.07374 -13.03884 -12.86723 -12.79290 -12.63926 -12.43124 -12.22287 -11.92283 -11.77881 -11.75321 -11.45434 -11.13354 -11.07584 -10.81207 -10.30496 -10.17298 -9.84945 -9.51248 -8.69923 -8.35071 -6.14572 0.33901 1.18218 1.41298 1.44141 1.48701 1.53619 1.75724 2.14078 2.18386 2.26744 2.99043 3.18380 3.36096 3.42517 3.57611 3.85620 3.87997 3.96328 4.02978 4.14329 4.15685 4.22055 4.26145 4.31700 4.41822 4.45630 4.50873 4.55874 4.69035 4.69121 4.74799 4.83446 4.85471 4.90679 4.93938 5.06273 5.07861 5.13022 5.18655 5.20836 5.32965 5.40664 5.43529 5.57218 5.63820 6.18795 6.27912 6.31404 7.02480 7.04682 7.05735 8.74043 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.036873 B = 0.001788 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.182390 B =15654.691945 C =15812.803178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.071 4.071 4 C -0.194 4.194 5 C -0.135 4.135 6 C 0.546 3.454 7 O -0.595 6.595 8 N -0.596 5.596 9 C 0.042 3.958 10 C 0.133 3.867 11 H 0.089 0.911 12 C -0.121 4.121 13 C 0.093 3.907 14 N -0.616 5.616 15 C 0.547 3.453 16 O -0.568 6.568 17 C -0.118 4.118 18 S -0.153 6.153 19 C -0.547 4.547 20 H 0.085 0.915 21 C 0.014 3.986 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.260 1.260 25 H -0.279 1.279 26 H -0.262 1.262 27 C 0.099 3.901 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.271 0.729 47 H 0.088 0.912 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.358 -24.903 6.329 36.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.141 4.141 3 C -0.091 4.091 4 C -0.197 4.197 5 C -0.190 4.190 6 C 0.338 3.662 7 O -0.477 6.477 8 N -0.326 5.326 9 C -0.098 4.098 10 C 0.027 3.973 11 H 0.107 0.893 12 C -0.159 4.159 13 C -0.029 4.029 14 N -0.351 5.351 15 C 0.335 3.665 16 O -0.446 6.446 17 C -0.269 4.269 18 S 0.074 5.926 19 C -0.695 4.695 20 H 0.103 0.897 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.184 1.184 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.025 4.025 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.129 0.871 39 H 0.093 0.907 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.125 0.875 45 H 0.131 0.869 46 H 0.080 0.920 47 H 0.106 0.894 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -24.079 -25.046 4.636 35.051 hybrid contribution -0.289 1.837 0.598 1.954 sum -24.368 -23.209 5.234 34.056 Atomic orbital electron populations 1.21708 0.94123 1.02803 1.01958 1.20958 0.96873 0.91514 1.04714 1.23746 0.91689 0.97817 0.95860 1.21454 1.03757 0.93885 1.00566 1.21756 1.03426 0.99019 0.94805 1.19180 0.78407 0.88174 0.80415 1.90776 1.63755 1.57137 1.36015 1.47574 1.44655 1.10251 1.30165 1.23168 1.00834 0.94039 0.91712 1.21983 0.91824 0.83549 0.99905 0.89308 1.22972 0.99252 0.97853 0.95847 1.22361 0.87107 0.99545 0.93881 1.48282 1.19999 1.23279 1.43532 1.19852 0.80095 0.84873 0.81635 1.90693 1.46422 1.70638 1.36850 1.23291 1.03113 0.96553 1.03957 1.85629 1.21824 1.26701 1.58427 1.23168 1.09942 1.08055 1.28327 0.89731 1.26152 0.93913 1.02169 0.96868 1.70184 1.09189 1.38602 1.36823 0.84982 0.78010 0.76426 0.78432 1.18432 1.20408 1.18705 1.22494 0.95437 0.86441 0.98080 0.93163 0.90710 0.92632 0.89417 0.88396 0.88211 0.88325 0.89820 0.89035 0.88760 0.87143 0.90686 0.87760 0.87204 0.90303 0.88721 0.87523 0.86919 0.91970 0.89409 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 71.98 0.71 -0.31 16 2 C -0.10 -0.77 6.08 29.85 0.18 -0.59 16 3 C -0.07 -1.01 9.09 24.52 0.22 -0.79 16 4 C -0.19 -2.75 5.87 -18.70 -0.11 -2.86 16 5 C -0.13 -0.67 7.25 71.24 0.52 -0.16 16 6 C 0.55 11.87 7.59 86.57 0.66 12.53 16 7 O -0.59 -18.86 15.65 -4.09 -0.06 -18.93 16 8 N -0.60 -9.91 2.91 -819.09 -2.38 -12.29 16 9 C 0.04 0.32 7.33 127.77 0.94 1.25 16 10 C 0.13 2.68 3.44 46.39 0.16 2.84 16 11 H 0.09 2.34 7.04 -2.39 -0.02 2.33 16 12 C -0.12 -1.58 6.51 31.78 0.21 -1.37 16 13 C 0.09 1.72 6.49 86.73 0.56 2.28 16 14 N -0.62 -17.71 3.33 -811.79 -2.70 -20.41 16 15 C 0.55 21.89 7.87 87.66 0.69 22.58 16 16 O -0.57 -28.34 16.12 -3.02 -0.05 -28.38 16 17 C -0.12 -4.87 5.35 71.23 0.38 -4.49 16 18 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 19 C -0.55 -31.51 9.50 67.95 0.65 -30.87 16 20 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 21 C 0.01 0.79 5.49 84.86 0.47 1.25 16 22 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 23 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 24 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 27 C 0.10 2.54 6.47 86.86 0.56 3.10 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.31 8.14 -2.39 -0.02 0.30 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.10 0.39 5.48 -2.38 -0.01 0.37 16 33 H 0.10 1.92 7.51 -2.91 -0.02 1.90 16 34 H 0.10 0.27 4.62 -2.39 -0.01 0.26 16 35 H 0.08 0.22 6.11 -2.39 -0.01 0.20 16 36 H 0.09 0.21 6.70 -2.39 -0.02 0.20 16 37 H 0.09 0.22 6.57 -2.39 -0.02 0.20 16 38 H 0.11 0.53 4.36 -2.39 -0.01 0.52 16 39 H 0.07 0.57 6.33 -2.39 -0.02 0.55 16 40 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.11 0.89 7.10 -2.39 -0.02 0.87 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 45 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 46 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 47 H 0.09 1.93 6.30 -2.39 -0.02 1.91 16 48 H 0.05 1.60 8.04 -2.39 -0.02 1.58 16 Total: -1.00 -87.21 392.44 3.71 -83.49 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.97 Total: 12.54 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 6.79 Total: 4.40 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -4.80 Total: -88.97 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -0.11 Total: -47.31 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -87.21 3.71 -83.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720352343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.688 kcal (2) G-P(sol) polarization free energy of solvation -87.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds