Wall clock time and date at job start Sat Apr 11 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47356 * 2 1 4 4 C 1.32996 * 120.00364 * 122.91906 * 3 2 1 5 5 C 1.50691 * 120.00379 * 175.34450 * 4 3 2 6 6 C 1.47105 * 119.99645 * 355.34503 * 4 3 2 7 7 O 1.21618 * 120.00151 * 262.88490 * 6 4 3 8 8 N 1.34780 * 119.99838 * 82.88650 * 6 4 3 9 9 C 1.47019 * 125.64936 * 354.73933 * 8 6 4 10 10 C 1.54324 * 107.27162 * 181.09601 * 9 8 6 11 11 C 1.55155 * 102.94082 * 22.19560 * 10 9 8 12 12 H 1.09002 * 111.04029 * 82.58622 * 11 10 9 13 13 N 1.46502 * 111.00352 * 206.42091 * 11 10 9 14 14 C 1.46505 * 119.99841 * 52.20223 * 13 11 10 15 15 C 1.34775 * 120.00058 * 232.19259 * 13 11 10 16 16 O 1.21282 * 120.00274 * 0.02562 * 15 13 11 17 17 C 1.50700 * 119.99984 * 180.02562 * 15 13 11 18 18 S 1.80999 * 109.47390 * 180.02562 * 17 15 13 19 19 C 1.76196 * 100.00216 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00211 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99914 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00272 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99959 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47179 * 90.00201 * 23 21 19 25 25 H 1.48498 * 109.47046 * 210.00326 * 23 21 19 26 26 H 1.48504 * 109.47060 * 329.99911 * 23 21 19 27 27 C 1.47426 * 125.64651 * 174.78765 * 8 6 4 28 28 H 1.09004 * 109.47093 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47292 * 299.99994 * 1 2 3 30 30 H 1.09003 * 109.47147 * 60.00144 * 1 2 3 31 31 H 1.09001 * 109.46902 * 239.99976 * 2 1 3 32 32 H 1.08997 * 109.46978 * 120.00294 * 2 1 3 33 33 H 1.08000 * 120.00192 * 302.92372 * 3 2 1 34 34 H 1.09003 * 109.47373 * 275.03262 * 5 4 3 35 35 H 1.08996 * 109.47266 * 35.03160 * 5 4 3 36 36 H 1.09000 * 109.47590 * 155.03791 * 5 4 3 37 37 H 1.08999 * 109.88420 * 300.51519 * 9 8 6 38 38 H 1.09001 * 109.88211 * 61.52868 * 9 8 6 39 39 H 1.08996 * 110.72181 * 263.83213 * 10 9 8 40 40 H 1.08999 * 110.71887 * 140.55526 * 10 9 8 41 41 H 1.08998 * 109.46680 * 269.99487 * 14 13 11 42 42 H 1.08996 * 109.46917 * 29.99347 * 14 13 11 43 43 H 1.08999 * 109.47120 * 150.00133 * 14 13 11 44 44 H 1.09002 * 109.47325 * 300.00984 * 17 15 13 45 45 H 1.09002 * 109.47082 * 60.00291 * 17 15 13 46 46 H 0.97001 * 119.99829 * 179.97438 * 22 21 19 47 47 H 1.09005 * 110.36761 * 36.99459 * 27 8 6 48 48 H 1.09006 * 110.45718 * 274.71887 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8442 1.8391 0.9668 5 6 3.4303 3.2262 0.9111 6 6 3.1700 0.9476 2.0907 7 8 2.5584 1.0405 3.1377 8 7 4.1465 0.0278 1.9600 9 6 4.8872 -0.2659 0.7244 10 6 5.8800 -1.4031 1.0447 11 6 5.2497 -2.0731 2.2942 12 1 4.4703 -2.7794 2.0082 13 7 6.2738 -2.7282 3.1116 14 6 7.4609 -1.9817 3.5355 15 6 6.1237 -4.0177 3.4739 16 8 5.1411 -4.6358 3.1228 17 6 7.1769 -4.6914 4.3153 18 16 6.6910 -6.4061 4.6312 19 6 8.0594 -6.9374 5.6057 20 1 8.8620 -6.2504 5.8295 21 6 8.1063 -8.2392 6.0849 22 7 7.1288 -9.0771 5.8108 23 14 9.5575 -8.8027 7.1175 24 1 9.2722 -8.5487 8.5525 25 1 9.7805 -10.2556 6.9067 26 1 10.7734 -8.0516 6.7140 27 6 4.6480 -0.8511 3.0321 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.7331 2.0993 -0.7851 34 1 4.3331 3.2150 0.3004 35 1 2.7037 3.9103 0.4727 36 1 3.6781 3.5568 1.9197 37 1 4.1959 -0.5860 -0.0551 38 1 5.4294 0.6214 0.3974 39 1 6.8654 -1.0003 1.2790 40 1 5.9378 -2.1093 0.2164 41 1 8.2462 -2.0932 2.7879 42 1 7.2079 -0.9268 3.6420 43 1 7.8119 -2.3696 4.4917 44 1 8.1297 -4.6757 3.7861 45 1 7.2787 -4.1619 5.2626 46 1 7.1618 -9.9869 6.1454 47 1 3.8292 -1.1645 3.6799 48 1 5.4172 -0.3424 3.6132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720354041.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:06 Heat of formation + Delta-G solvation = -54.119470 kcal Electronic energy + Delta-G solvation = -27291.487603 eV Core-core repulsion = 23473.098324 eV Total energy + Delta-G solvation = -3818.389278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.76221 -39.53407 -37.62155 -36.11189 -34.99193 -32.63321 -32.44592 -31.39366 -29.73698 -28.38193 -27.38588 -26.88573 -25.51984 -24.61048 -22.78617 -21.87116 -21.29673 -19.31845 -18.59444 -17.79957 -17.20726 -16.94418 -16.29070 -15.74575 -15.62603 -15.40596 -14.90013 -14.81483 -14.46563 -14.02789 -13.91703 -13.87517 -13.50024 -13.43924 -13.22249 -13.16627 -12.99025 -12.80916 -12.67944 -12.54175 -12.38709 -12.33132 -12.06808 -12.00633 -11.59801 -11.44284 -11.32073 -11.08084 -11.05244 -11.00747 -10.77705 -10.14746 -9.83027 -9.46379 -9.36416 -9.08351 -9.02679 -8.60531 -8.25529 -6.52639 -6.23334 -3.94335 1.39254 2.30551 2.52346 2.92826 2.98370 3.21255 3.24563 3.29012 3.55228 4.05223 4.18285 4.24342 4.33800 4.52932 4.61276 4.69073 4.78537 4.87320 4.94796 4.98872 5.04017 5.05981 5.08280 5.11886 5.16015 5.25519 5.28662 5.34564 5.44434 5.45575 5.49227 5.55581 5.60132 5.66930 5.70126 5.72016 5.80081 5.85694 5.88841 5.92230 6.02875 6.09195 6.19008 6.52570 7.15710 7.40811 7.57852 7.83993 8.33327 8.45295 9.21962 10.84051 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024448 B = 0.002080 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.024217 B =13455.845528 C =13957.219635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.109 4.109 4 C -0.165 4.165 5 C -0.102 4.102 6 C 0.576 3.424 7 O -0.532 6.532 8 N -0.614 5.614 9 C 0.105 3.895 10 C -0.143 4.143 11 C 0.133 3.867 12 H 0.118 0.882 13 N -0.615 5.615 14 C 0.076 3.924 15 C 0.536 3.464 16 O -0.513 6.513 17 C -0.149 4.149 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.093 3.907 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.126 0.874 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.269 0.731 47 H 0.085 0.915 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.835 24.679 -14.629 28.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.128 4.128 4 C -0.168 4.168 5 C -0.159 4.159 6 C 0.366 3.634 7 O -0.409 6.409 8 N -0.348 5.348 9 C -0.018 4.018 10 C -0.182 4.182 11 C 0.028 3.972 12 H 0.136 0.864 13 N -0.350 5.350 14 C -0.067 4.067 15 C 0.324 3.676 16 O -0.386 6.386 17 C -0.300 4.300 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.031 4.031 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.104 0.896 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.746 23.667 -14.537 28.363 hybrid contribution 2.219 0.445 1.053 2.496 sum -3.527 24.112 -13.484 27.851 Atomic orbital electron populations 1.21681 0.94367 1.02247 1.02085 1.20834 0.97103 0.93707 1.02955 1.23377 0.95535 0.97444 0.96413 1.21455 1.02474 0.97433 0.95415 1.20643 1.00785 0.91548 1.02973 1.18153 0.78124 0.79241 0.87932 1.90851 1.50249 1.70315 1.29453 1.48441 1.36761 1.37475 1.12165 1.22034 0.94308 0.98275 0.87213 1.23029 0.98978 0.97132 0.99042 1.22049 0.91624 0.93796 0.89772 0.86445 1.47701 1.21853 1.11647 1.53831 1.21800 0.87203 0.96726 1.00976 1.20414 0.87314 0.80363 0.79479 1.90702 1.30695 1.63217 1.53996 1.23556 1.00125 1.05111 1.01187 1.85422 1.31192 0.98931 1.67928 1.22844 1.07738 0.99918 1.37818 0.90916 1.24997 0.96966 0.95528 0.96110 1.70018 1.31244 1.05761 1.43212 0.86166 0.81368 0.77930 0.80022 1.20256 1.20750 1.19692 1.22589 0.99580 0.90267 0.90627 0.92127 0.92404 0.92462 0.90167 0.91286 0.85598 0.90908 0.90902 0.91547 0.90918 0.90982 0.89786 0.89152 0.92416 0.91266 0.90260 0.89118 0.89098 0.92162 0.89625 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 37.16 0.37 -0.73 16 2 C -0.11 -0.86 5.47 -27.89 -0.15 -1.01 16 3 C -0.11 -0.78 9.22 -36.13 -0.33 -1.11 16 4 C -0.16 -1.42 4.93 -102.85 -0.51 -1.93 16 5 C -0.10 -0.64 10.02 36.00 0.36 -0.28 16 6 C 0.58 6.86 5.33 -12.66 -0.07 6.80 16 7 O -0.53 -8.66 17.34 5.26 0.09 -8.56 16 8 N -0.61 -6.26 3.13 -171.90 -0.54 -6.80 16 9 C 0.10 0.75 6.47 -3.07 -0.02 0.73 16 10 C -0.14 -1.12 6.50 -24.90 -0.16 -1.28 16 11 C 0.13 1.53 3.45 -65.78 -0.23 1.30 16 12 H 0.12 1.63 7.02 -51.93 -0.36 1.26 16 13 N -0.61 -8.05 2.91 -171.48 -0.50 -8.55 16 14 C 0.08 0.72 8.87 59.85 0.53 1.25 16 15 C 0.54 9.78 7.69 -10.99 -0.08 9.70 16 16 O -0.51 -11.36 15.24 5.56 0.08 -11.28 16 17 C -0.15 -2.94 4.71 36.01 0.17 -2.77 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.53 -15.05 9.50 30.94 0.29 -14.76 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 23 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 27 C 0.09 1.05 6.51 -2.53 -0.02 1.04 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.71 6.14 -51.93 -0.32 0.39 16 33 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 36 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.07 0.47 7.38 -51.93 -0.38 0.09 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.57 7.01 -51.93 -0.36 0.20 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 42 H 0.07 0.51 6.40 -51.93 -0.33 0.18 16 43 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 44 H 0.09 1.64 8.11 -51.91 -0.42 1.22 16 45 H 0.09 1.65 7.40 -51.92 -0.38 1.27 16 46 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.09 1.17 7.99 -51.93 -0.41 0.76 16 48 H 0.07 0.77 6.37 -51.93 -0.33 0.44 16 LS Contribution 403.03 15.07 6.07 6.07 Total: -1.00 -36.21 403.03 -9.07 -45.28 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -7.83 Total: -2.15 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 0.06 Total: -1.09 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: -0.30 Total: -40.62 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.18 Total: -19.84 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.21 -9.07 -45.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720354041.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.840 kcal (2) G-P(sol) polarization free energy of solvation -36.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds