Wall clock time and date at job start Sat Apr 11 2020 06:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47356 * 2 1 4 4 C 1.32996 * 120.00364 * 122.91906 * 3 2 1 5 5 C 1.50691 * 120.00379 * 175.34450 * 4 3 2 6 6 C 1.47105 * 119.99645 * 355.34503 * 4 3 2 7 7 O 1.21618 * 120.00151 * 262.88490 * 6 4 3 8 8 N 1.34780 * 119.99838 * 82.88650 * 6 4 3 9 9 C 1.47019 * 125.64936 * 354.73933 * 8 6 4 10 10 C 1.54324 * 107.27162 * 181.09601 * 9 8 6 11 11 C 1.55155 * 102.94082 * 22.19560 * 10 9 8 12 12 H 1.09002 * 111.04029 * 82.58622 * 11 10 9 13 13 N 1.46502 * 111.00352 * 206.42091 * 11 10 9 14 14 C 1.46505 * 119.99841 * 52.20223 * 13 11 10 15 15 C 1.34775 * 120.00058 * 232.19259 * 13 11 10 16 16 O 1.21282 * 120.00274 * 0.02562 * 15 13 11 17 17 C 1.50700 * 119.99984 * 180.02562 * 15 13 11 18 18 S 1.80999 * 109.47390 * 180.02562 * 17 15 13 19 19 C 1.76196 * 100.00216 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00211 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99914 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00272 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99959 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47179 * 90.00201 * 23 21 19 25 25 H 1.48498 * 109.47046 * 210.00326 * 23 21 19 26 26 H 1.48504 * 109.47060 * 329.99911 * 23 21 19 27 27 C 1.47426 * 125.64651 * 174.78765 * 8 6 4 28 28 H 1.09004 * 109.47093 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47292 * 299.99994 * 1 2 3 30 30 H 1.09003 * 109.47147 * 60.00144 * 1 2 3 31 31 H 1.09001 * 109.46902 * 239.99976 * 2 1 3 32 32 H 1.08997 * 109.46978 * 120.00294 * 2 1 3 33 33 H 1.08000 * 120.00192 * 302.92372 * 3 2 1 34 34 H 1.09003 * 109.47373 * 275.03262 * 5 4 3 35 35 H 1.08996 * 109.47266 * 35.03160 * 5 4 3 36 36 H 1.09000 * 109.47590 * 155.03791 * 5 4 3 37 37 H 1.08999 * 109.88420 * 300.51519 * 9 8 6 38 38 H 1.09001 * 109.88211 * 61.52868 * 9 8 6 39 39 H 1.08996 * 110.72181 * 263.83213 * 10 9 8 40 40 H 1.08999 * 110.71887 * 140.55526 * 10 9 8 41 41 H 1.08998 * 109.46680 * 269.99487 * 14 13 11 42 42 H 1.08996 * 109.46917 * 29.99347 * 14 13 11 43 43 H 1.08999 * 109.47120 * 150.00133 * 14 13 11 44 44 H 1.09002 * 109.47325 * 300.00984 * 17 15 13 45 45 H 1.09002 * 109.47082 * 60.00291 * 17 15 13 46 46 H 0.97001 * 119.99829 * 179.97438 * 22 21 19 47 47 H 1.09005 * 110.36761 * 36.99459 * 27 8 6 48 48 H 1.09006 * 110.45718 * 274.71887 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8442 1.8391 0.9668 5 6 3.4303 3.2262 0.9111 6 6 3.1700 0.9476 2.0907 7 8 2.5584 1.0405 3.1377 8 7 4.1465 0.0278 1.9600 9 6 4.8872 -0.2659 0.7244 10 6 5.8800 -1.4031 1.0447 11 6 5.2497 -2.0731 2.2942 12 1 4.4703 -2.7794 2.0082 13 7 6.2738 -2.7282 3.1116 14 6 7.4609 -1.9817 3.5355 15 6 6.1237 -4.0177 3.4739 16 8 5.1411 -4.6358 3.1228 17 6 7.1769 -4.6914 4.3153 18 16 6.6910 -6.4061 4.6312 19 6 8.0594 -6.9374 5.6057 20 1 8.8620 -6.2504 5.8295 21 6 8.1063 -8.2392 6.0849 22 7 7.1288 -9.0771 5.8108 23 14 9.5575 -8.8027 7.1175 24 1 9.2722 -8.5487 8.5525 25 1 9.7805 -10.2556 6.9067 26 1 10.7734 -8.0516 6.7140 27 6 4.6480 -0.8511 3.0321 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.7331 2.0993 -0.7851 34 1 4.3331 3.2150 0.3004 35 1 2.7037 3.9103 0.4727 36 1 3.6781 3.5568 1.9197 37 1 4.1959 -0.5860 -0.0551 38 1 5.4294 0.6214 0.3974 39 1 6.8654 -1.0003 1.2790 40 1 5.9378 -2.1093 0.2164 41 1 8.2462 -2.0932 2.7879 42 1 7.2079 -0.9268 3.6420 43 1 7.8119 -2.3696 4.4917 44 1 8.1297 -4.6757 3.7861 45 1 7.2787 -4.1619 5.2626 46 1 7.1618 -9.9869 6.1454 47 1 3.8292 -1.1645 3.6799 48 1 5.4172 -0.3424 3.6132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720354041.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:59 Heat of formation + Delta-G solvation = -77.743175 kcal Electronic energy + Delta-G solvation = -27292.512003 eV Core-core repulsion = 23473.098324 eV Total energy + Delta-G solvation = -3819.413679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 3.84 seconds Orbital eigenvalues (eV) -41.69931 -40.72984 -38.67658 -36.84086 -36.13427 -34.58664 -33.26322 -32.37960 -30.80353 -29.52094 -27.99631 -27.78444 -27.63967 -25.47522 -23.42578 -22.66192 -22.25802 -20.52332 -19.63761 -19.40012 -18.49181 -17.78007 -17.35434 -16.90463 -16.86517 -16.67679 -16.36629 -16.06395 -15.45127 -15.24466 -14.75221 -14.62262 -14.51951 -14.48499 -14.29725 -14.03740 -13.93775 -13.73362 -13.64731 -13.50396 -13.25340 -13.21913 -13.14846 -13.02585 -12.89790 -12.77912 -12.58900 -12.53277 -12.07303 -11.92894 -11.79452 -11.71403 -11.14576 -11.07205 -10.94215 -10.27074 -9.96392 -9.94416 -9.63859 -8.68123 -8.34852 -6.13345 0.79170 1.22363 1.42462 1.42753 1.43550 1.50124 1.54866 1.79118 2.19687 2.27296 2.99421 3.23467 3.28910 3.44637 3.66534 3.73465 3.84760 3.93367 4.04158 4.06634 4.16630 4.21407 4.31776 4.33841 4.45453 4.47855 4.50108 4.52755 4.63654 4.71856 4.72349 4.74811 4.80610 4.89571 4.94349 4.96948 5.04016 5.07628 5.11807 5.16384 5.25203 5.41250 5.41713 5.49517 5.62643 6.18011 6.20322 6.34050 6.95837 7.06350 7.07707 8.74351 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024448 B = 0.002080 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.024217 B =13455.845528 C =13957.219635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.093 4.093 4 C -0.181 4.181 5 C -0.098 4.098 6 C 0.571 3.429 7 O -0.591 6.591 8 N -0.611 5.611 9 C 0.105 3.895 10 C -0.128 4.128 11 C 0.130 3.870 12 H 0.085 0.915 13 N -0.599 5.599 14 C 0.065 3.935 15 C 0.534 3.466 16 O -0.565 6.565 17 C -0.121 4.121 18 S -0.157 6.157 19 C -0.543 4.543 20 H 0.085 0.915 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.256 1.256 27 C 0.097 3.903 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.036 0.964 33 H 0.160 0.840 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.113 0.887 45 H 0.108 0.892 46 H 0.271 0.729 47 H 0.048 0.952 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 27.488 -16.436 32.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.112 4.112 4 C -0.184 4.184 5 C -0.154 4.154 6 C 0.362 3.638 7 O -0.472 6.472 8 N -0.344 5.344 9 C -0.017 4.017 10 C -0.167 4.167 11 C 0.024 3.976 12 H 0.103 0.897 13 N -0.333 5.333 14 C -0.076 4.076 15 C 0.322 3.678 16 O -0.443 6.443 17 C -0.272 4.272 18 S 0.071 5.929 19 C -0.691 4.691 20 H 0.103 0.897 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.821 3.179 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.179 1.179 27 C -0.027 4.027 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.055 0.945 33 H 0.177 0.823 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.131 0.869 45 H 0.126 0.874 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.070 26.533 -16.385 31.335 hybrid contribution 1.342 -0.338 1.557 2.084 sum -1.728 26.194 -14.828 30.149 Atomic orbital electron populations 1.21676 0.94210 1.02131 1.02304 1.20874 0.97288 0.94491 1.02301 1.23601 0.93878 0.97153 0.96528 1.21508 1.04114 0.98043 0.94698 1.20682 1.02086 0.90078 1.02596 1.18829 0.77422 0.79389 0.88141 1.90813 1.52303 1.72065 1.31988 1.48524 1.36499 1.36457 1.12888 1.22262 0.94278 0.99279 0.85884 1.23017 0.99856 0.96963 0.96846 1.22055 0.91091 0.92995 0.91411 0.89684 1.47633 1.23010 1.09999 1.52612 1.22163 0.86129 0.97623 1.01698 1.20212 0.86299 0.81955 0.79376 1.90687 1.32471 1.64977 1.56151 1.23366 1.01238 0.99909 1.02722 1.85635 1.33083 1.05652 1.68561 1.23183 1.07720 1.00525 1.37663 0.89739 1.26150 1.00166 0.95591 0.97386 1.70191 1.33709 1.06220 1.44731 0.84945 0.77555 0.77463 0.77966 1.19455 1.20375 1.17942 1.22434 0.98689 0.90696 0.90870 0.92538 0.94180 0.90137 0.88194 0.94507 0.82305 0.88700 0.89215 0.93187 0.90049 0.87853 0.87433 0.88400 0.89802 0.88601 0.90362 0.86896 0.87351 0.92035 0.93301 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.89 71.98 0.71 -1.39 16 2 C -0.11 -1.65 5.47 29.85 0.16 -1.49 16 3 C -0.09 -1.11 9.22 24.52 0.23 -0.88 16 4 C -0.18 -2.81 4.93 -18.71 -0.09 -2.91 16 5 C -0.10 -0.97 10.02 71.23 0.71 -0.25 16 6 C 0.57 13.69 5.33 86.57 0.46 14.15 16 7 O -0.59 -20.39 17.34 -4.09 -0.07 -20.46 16 8 N -0.61 -12.08 3.13 -816.03 -2.55 -14.63 16 9 C 0.10 1.21 6.47 86.73 0.56 1.77 16 10 C -0.13 -1.64 6.50 31.78 0.21 -1.44 16 11 C 0.13 2.93 3.45 46.38 0.16 3.09 16 12 H 0.08 2.52 7.02 -2.39 -0.02 2.50 16 13 N -0.60 -15.06 2.91 -814.83 -2.37 -17.43 16 14 C 0.07 1.02 8.87 127.77 1.13 2.15 16 15 C 0.53 19.74 7.69 87.66 0.67 20.41 16 16 O -0.56 -26.43 15.24 -3.04 -0.05 -26.48 16 17 C -0.12 -4.74 4.71 71.24 0.34 -4.41 16 18 S -0.16 -8.70 20.57 -56.49 -1.16 -9.86 16 19 C -0.54 -30.80 9.50 67.95 0.65 -30.15 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.66 5.49 84.86 0.47 1.13 16 22 N -0.91 -56.19 13.22 21.65 0.29 -55.90 16 23 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 27 C 0.10 2.23 6.51 86.85 0.57 2.80 16 28 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.04 0.78 6.14 -2.39 -0.01 0.77 16 33 H 0.16 0.89 8.06 -2.91 -0.02 0.86 16 34 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.09 0.59 8.10 -2.39 -0.02 0.57 16 36 H 0.05 0.66 8.08 -2.39 -0.02 0.64 16 37 H 0.08 0.84 7.38 -2.39 -0.02 0.82 16 38 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.11 0.93 7.01 -2.39 -0.02 0.92 16 40 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 42 H 0.10 1.04 6.40 -2.39 -0.02 1.02 16 43 H 0.08 1.29 6.44 -2.39 -0.02 1.28 16 44 H 0.11 3.90 8.11 -2.39 -0.02 3.88 16 45 H 0.11 3.84 7.40 -2.39 -0.02 3.83 16 46 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 47 H 0.05 1.47 7.99 -2.38 -0.02 1.45 16 48 H 0.09 1.75 6.37 -2.38 -0.02 1.74 16 Total: -1.00 -86.11 403.03 3.98 -82.12 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.94 Total: 14.63 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 6.93 Total: 2.59 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -4.64 Total: -87.96 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -0.12 Total: -46.93 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -86.11 3.98 -82.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720354041.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.378 kcal (2) G-P(sol) polarization free energy of solvation -86.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.84 seconds