Wall clock time and date at job start Sat Apr 11 2020 06:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47413 * 2 1 4 4 C 1.32994 * 120.00173 * 127.25958 * 3 2 1 5 5 C 1.50700 * 119.99544 * 7.39307 * 4 3 2 6 6 C 1.47099 * 120.00442 * 187.38637 * 4 3 2 7 7 O 1.21616 * 119.99816 * 5.68510 * 6 4 3 8 8 N 1.34771 * 120.00250 * 185.68457 * 6 4 3 9 9 C 1.47021 * 125.64805 * 355.20171 * 8 6 4 10 10 C 1.54328 * 107.27117 * 178.90696 * 9 8 6 11 11 C 1.55154 * 102.94254 * 337.81343 * 10 9 8 12 12 H 1.09001 * 111.00225 * 277.38354 * 11 10 9 13 13 N 1.46494 * 111.00394 * 153.57384 * 11 10 9 14 14 C 1.46499 * 120.00169 * 304.58074 * 13 11 10 15 15 C 1.34782 * 120.00162 * 124.58118 * 13 11 10 16 16 O 1.21279 * 119.99688 * 359.97438 * 15 13 11 17 17 C 1.50699 * 120.00150 * 180.02562 * 15 13 11 18 18 S 1.80998 * 109.47298 * 179.97438 * 17 15 13 19 19 C 1.76191 * 100.00349 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99878 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00605 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99420 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00347 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47337 * 180.02562 * 23 21 19 25 25 H 1.48497 * 109.47548 * 60.00079 * 23 21 19 26 26 H 1.48509 * 109.47220 * 299.99737 * 23 21 19 27 27 C 1.47468 * 125.63064 * 175.12721 * 8 6 4 28 28 H 1.08990 * 109.47583 * 59.99474 * 1 2 3 29 29 H 1.09004 * 109.47248 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46722 * 299.99182 * 1 2 3 31 31 H 1.09003 * 109.46722 * 240.00818 * 2 1 3 32 32 H 1.09000 * 109.47623 * 120.00366 * 2 1 3 33 33 H 1.07998 * 120.00004 * 307.26671 * 3 2 1 34 34 H 1.09000 * 109.46906 * 235.70758 * 5 4 3 35 35 H 1.08998 * 109.47483 * 355.70642 * 5 4 3 36 36 H 1.09003 * 109.47481 * 115.71197 * 5 4 3 37 37 H 1.09006 * 109.87720 * 59.49610 * 9 8 6 38 38 H 1.08999 * 109.88583 * 298.33031 * 9 8 6 39 39 H 1.08994 * 110.71859 * 219.44610 * 10 9 8 40 40 H 1.08997 * 110.86630 * 96.24569 * 10 9 8 41 41 H 1.08996 * 109.47167 * 270.00182 * 14 13 11 42 42 H 1.08996 * 109.47272 * 29.99777 * 14 13 11 43 43 H 1.08994 * 109.47519 * 149.99956 * 14 13 11 44 44 H 1.09002 * 109.47427 * 59.99177 * 17 15 13 45 45 H 1.09004 * 109.46635 * 299.99657 * 17 15 13 46 46 H 0.97004 * 120.00130 * 359.97438 * 22 21 19 47 47 H 1.09004 * 110.34545 * 85.31594 * 27 8 6 48 48 H 1.08999 * 110.40781 * 322.98649 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9115 1.8153 0.9167 5 6 3.5312 0.8068 1.8494 6 6 3.2790 3.2359 1.0201 7 8 2.7044 4.0637 0.3392 8 7 4.2524 3.6200 1.8694 9 6 4.9563 2.7449 2.8181 10 6 5.9986 3.6124 3.5549 11 6 6.2121 4.8012 2.5810 12 1 6.9234 4.5412 1.7971 13 7 6.6456 6.0000 3.3029 14 6 5.8409 6.5183 4.4120 15 6 7.7848 6.6261 2.9468 16 8 8.4512 6.1968 2.0290 17 6 8.2310 7.8589 3.6898 18 16 9.7838 8.4615 2.9813 19 6 10.0645 9.8651 4.0085 20 1 9.3618 10.1109 4.7910 21 6 11.1887 10.6552 3.8122 22 7 12.0448 10.3560 2.8582 23 14 11.4866 12.1429 4.9017 24 1 12.7458 12.8139 4.4898 25 1 11.5980 11.7061 6.3166 26 1 10.3527 13.0921 4.7644 27 6 4.7885 4.9876 1.9995 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8932 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6784 2.1187 -0.7443 34 1 3.3529 1.1088 2.8814 35 1 3.0845 -0.1720 1.6750 36 1 4.6045 0.7542 1.6665 37 1 5.4576 1.9410 2.2790 38 1 4.2479 2.3284 3.5342 39 1 6.9273 3.0602 3.6989 40 1 5.6073 3.9619 4.5102 41 1 5.1131 7.2338 4.0294 42 1 5.3190 5.6942 4.8984 43 1 6.4917 7.0125 5.1332 44 1 8.3823 7.6147 4.7412 45 1 7.4673 8.6319 3.6026 46 1 11.8903 9.5832 2.2926 47 1 4.1730 5.5725 2.6830 48 1 4.8376 5.4711 1.0238 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720354043.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:19 Heat of formation + Delta-G solvation = -42.434345 kcal Electronic energy + Delta-G solvation = -26906.004101 eV Core-core repulsion = 23088.121527 eV Total energy + Delta-G solvation = -3817.882573 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.81427 -39.59531 -37.73163 -36.54713 -35.17010 -32.57754 -32.54787 -31.29911 -29.85932 -28.52830 -27.38393 -26.93367 -25.16498 -24.79454 -23.33092 -21.60348 -20.52659 -19.38028 -18.77449 -18.29507 -17.36277 -17.00523 -16.39529 -16.30274 -15.71575 -15.49272 -14.79554 -14.71261 -14.52104 -14.29301 -14.17381 -13.85325 -13.53739 -13.43900 -13.32710 -13.15813 -12.95199 -12.89136 -12.58044 -12.51142 -12.48926 -12.34236 -12.13788 -11.89624 -11.79156 -11.64905 -11.51894 -11.05809 -10.98805 -10.93272 -10.18681 -10.14453 -9.59420 -9.57530 -9.50709 -9.03395 -8.93494 -8.65602 -8.24782 -6.70132 -6.63953 -4.02409 1.01272 2.42720 2.82827 2.87209 2.93765 3.30722 3.36689 3.40723 3.56657 3.98710 4.17023 4.23020 4.37954 4.45181 4.53231 4.55896 4.69589 4.73663 4.79490 4.83034 4.94290 4.98105 4.99794 5.08079 5.19359 5.20476 5.26799 5.28596 5.38188 5.41487 5.42818 5.44152 5.51823 5.58542 5.61113 5.65642 5.68962 5.74575 5.79169 5.86129 5.96365 6.11570 6.15506 6.45879 7.17487 7.32030 7.86740 7.89369 8.34605 8.48047 9.25065 10.79867 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.036314 B = 0.001807 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.874820 B =15493.434197 C =15538.531746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.070 4.070 4 C -0.184 4.184 5 C -0.136 4.136 6 C 0.570 3.430 7 O -0.541 6.541 8 N -0.613 5.613 9 C 0.095 3.905 10 C -0.149 4.149 11 C 0.132 3.868 12 H 0.118 0.882 13 N -0.613 5.613 14 C 0.074 3.926 15 C 0.535 3.465 16 O -0.514 6.514 17 C -0.127 4.127 18 S -0.117 6.117 19 C -0.608 4.608 20 H 0.066 0.934 21 C 0.036 3.964 22 N -0.883 5.883 23 Si 1.084 2.916 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.098 3.902 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.278 0.722 47 H 0.073 0.927 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.909 -22.476 2.363 31.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.090 4.090 4 C -0.187 4.187 5 C -0.192 4.192 6 C 0.361 3.639 7 O -0.420 6.420 8 N -0.347 5.347 9 C -0.028 4.028 10 C -0.188 4.188 11 C 0.027 3.973 12 H 0.136 0.864 13 N -0.349 5.349 14 C -0.069 4.069 15 C 0.323 3.677 16 O -0.387 6.387 17 C -0.278 4.278 18 S 0.110 5.890 19 C -0.756 4.756 20 H 0.084 0.916 21 C -0.175 4.175 22 N -0.517 5.517 23 Si 0.910 3.090 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.026 4.026 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.210 -21.431 0.862 29.470 hybrid contribution -1.977 -0.543 1.069 2.313 sum -22.187 -21.974 1.931 31.287 Atomic orbital electron populations 1.21704 0.94369 1.02021 1.02457 1.20967 0.96683 0.93624 1.03484 1.23579 0.92461 0.97530 0.95411 1.21286 1.02515 0.93084 1.01852 1.21498 1.01130 0.97878 0.98667 1.18106 0.78385 0.88790 0.78593 1.90810 1.52514 1.54007 1.44644 1.48204 1.37277 1.10472 1.38720 1.22623 0.94441 0.93914 0.91799 1.23129 0.99711 0.96735 0.99210 1.22074 0.95372 0.84720 0.95166 0.86429 1.47661 1.24388 1.28116 1.34702 1.21832 0.96162 0.99553 0.89349 1.20380 0.79406 0.84354 0.83541 1.90700 1.53300 1.65534 1.29188 1.23346 1.04498 0.97011 1.02946 1.84839 1.21982 1.34712 1.47507 1.23688 1.15225 1.14500 1.22183 0.91602 1.26056 0.91495 1.01675 0.98260 1.70804 1.35929 1.27816 1.17163 0.83329 0.76621 0.74317 0.74740 1.20262 1.21131 1.21129 1.22533 0.93720 0.83806 1.02524 0.92299 0.92109 0.92439 0.90148 0.89943 0.85627 0.90862 0.90536 0.90289 0.90003 0.90370 0.89117 0.89760 0.92392 0.91007 0.90239 0.88832 0.88839 0.90991 0.90876 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.89 37.16 0.37 -0.33 16 2 C -0.11 -0.56 6.13 -27.89 -0.17 -0.73 16 3 C -0.07 -0.56 9.06 -36.13 -0.33 -0.88 16 4 C -0.18 -1.60 5.99 -102.85 -0.62 -2.21 16 5 C -0.14 -0.72 8.01 36.01 0.29 -0.43 16 6 C 0.57 6.90 7.78 -12.67 -0.10 6.80 16 7 O -0.54 -8.67 16.55 5.26 0.09 -8.58 16 8 N -0.61 -6.38 3.33 -171.88 -0.57 -6.95 16 9 C 0.10 0.66 5.18 -3.06 -0.02 0.65 16 10 C -0.15 -1.17 6.50 -24.90 -0.16 -1.33 16 11 C 0.13 1.53 3.45 -65.79 -0.23 1.30 16 12 H 0.12 1.64 7.01 -51.93 -0.36 1.27 16 13 N -0.61 -8.09 2.91 -171.49 -0.50 -8.58 16 14 C 0.07 0.71 9.05 59.85 0.54 1.25 16 15 C 0.54 9.79 7.69 -10.98 -0.08 9.71 16 16 O -0.51 -11.36 15.24 5.56 0.08 -11.28 16 17 C -0.13 -2.52 4.71 36.01 0.17 -2.35 16 18 S -0.12 -3.12 19.60 -107.50 -2.11 -5.23 16 19 C -0.61 -17.39 9.50 30.94 0.29 -17.10 16 20 H 0.07 1.79 7.80 -52.48 -0.41 1.39 16 21 C 0.04 1.03 5.49 -17.43 -0.10 0.94 16 22 N -0.88 -27.40 13.67 55.49 0.76 -26.64 16 23 Si 1.08 24.77 29.92 -169.99 -5.09 19.68 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.10 1.13 6.48 -2.51 -0.02 1.11 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.33 5.18 -51.93 -0.27 0.06 16 33 H 0.13 1.17 7.55 -52.49 -0.40 0.77 16 34 H 0.07 0.33 5.89 -51.93 -0.31 0.03 16 35 H 0.08 0.30 5.08 -51.93 -0.26 0.04 16 36 H 0.08 0.38 5.90 -51.93 -0.31 0.08 16 37 H 0.08 0.48 5.74 -51.93 -0.30 0.18 16 38 H 0.08 0.40 6.16 -51.93 -0.32 0.09 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.57 6.12 -51.93 -0.32 0.25 16 41 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 42 H 0.07 0.51 6.12 -51.93 -0.32 0.19 16 43 H 0.08 0.77 6.44 -51.93 -0.33 0.43 16 44 H 0.09 1.70 7.40 -51.91 -0.38 1.32 16 45 H 0.09 1.74 8.11 -51.91 -0.42 1.32 16 46 H 0.28 8.80 7.13 -40.82 -0.29 8.51 16 47 H 0.07 0.79 7.15 -51.93 -0.37 0.42 16 48 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 LS Contribution 389.10 15.07 5.86 5.86 Total: -1.00 -37.13 389.10 -8.74 -45.87 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.12 Total: -0.53 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -0.15 Total: -3.62 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: -0.31 Total: -42.17 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: 0.17 Total: -19.86 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.09 Total: 19.68 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.11 Total: -5.23 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.13 -8.74 -45.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720354043.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.434 kcal (2) G-P(sol) polarization free energy of solvation -37.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds