Wall clock time and date at job start Sat Apr 11 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47413 * 2 1 4 4 C 1.32994 * 120.00173 * 127.25958 * 3 2 1 5 5 C 1.50700 * 119.99544 * 7.39307 * 4 3 2 6 6 C 1.47099 * 120.00442 * 187.38637 * 4 3 2 7 7 O 1.21616 * 119.99816 * 5.68510 * 6 4 3 8 8 N 1.34771 * 120.00250 * 185.68457 * 6 4 3 9 9 C 1.47021 * 125.64805 * 355.20171 * 8 6 4 10 10 C 1.54328 * 107.27117 * 178.90696 * 9 8 6 11 11 C 1.55154 * 102.94254 * 337.81343 * 10 9 8 12 12 H 1.09001 * 111.00225 * 277.38354 * 11 10 9 13 13 N 1.46494 * 111.00394 * 153.57384 * 11 10 9 14 14 C 1.46499 * 120.00169 * 304.58074 * 13 11 10 15 15 C 1.34782 * 120.00162 * 124.58118 * 13 11 10 16 16 O 1.21279 * 119.99688 * 359.97438 * 15 13 11 17 17 C 1.50699 * 120.00150 * 180.02562 * 15 13 11 18 18 S 1.80998 * 109.47298 * 179.97438 * 17 15 13 19 19 C 1.76191 * 100.00349 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99878 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00605 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99420 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00347 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47337 * 180.02562 * 23 21 19 25 25 H 1.48497 * 109.47548 * 60.00079 * 23 21 19 26 26 H 1.48509 * 109.47220 * 299.99737 * 23 21 19 27 27 C 1.47468 * 125.63064 * 175.12721 * 8 6 4 28 28 H 1.08990 * 109.47583 * 59.99474 * 1 2 3 29 29 H 1.09004 * 109.47248 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46722 * 299.99182 * 1 2 3 31 31 H 1.09003 * 109.46722 * 240.00818 * 2 1 3 32 32 H 1.09000 * 109.47623 * 120.00366 * 2 1 3 33 33 H 1.07998 * 120.00004 * 307.26671 * 3 2 1 34 34 H 1.09000 * 109.46906 * 235.70758 * 5 4 3 35 35 H 1.08998 * 109.47483 * 355.70642 * 5 4 3 36 36 H 1.09003 * 109.47481 * 115.71197 * 5 4 3 37 37 H 1.09006 * 109.87720 * 59.49610 * 9 8 6 38 38 H 1.08999 * 109.88583 * 298.33031 * 9 8 6 39 39 H 1.08994 * 110.71859 * 219.44610 * 10 9 8 40 40 H 1.08997 * 110.86630 * 96.24569 * 10 9 8 41 41 H 1.08996 * 109.47167 * 270.00182 * 14 13 11 42 42 H 1.08996 * 109.47272 * 29.99777 * 14 13 11 43 43 H 1.08994 * 109.47519 * 149.99956 * 14 13 11 44 44 H 1.09002 * 109.47427 * 59.99177 * 17 15 13 45 45 H 1.09004 * 109.46635 * 299.99657 * 17 15 13 46 46 H 0.97004 * 120.00130 * 359.97438 * 22 21 19 47 47 H 1.09004 * 110.34545 * 85.31594 * 27 8 6 48 48 H 1.08999 * 110.40781 * 322.98649 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9115 1.8153 0.9167 5 6 3.5312 0.8068 1.8494 6 6 3.2790 3.2359 1.0201 7 8 2.7044 4.0637 0.3392 8 7 4.2524 3.6200 1.8694 9 6 4.9563 2.7449 2.8181 10 6 5.9986 3.6124 3.5549 11 6 6.2121 4.8012 2.5810 12 1 6.9234 4.5412 1.7971 13 7 6.6456 6.0000 3.3029 14 6 5.8409 6.5183 4.4120 15 6 7.7848 6.6261 2.9468 16 8 8.4512 6.1968 2.0290 17 6 8.2310 7.8589 3.6898 18 16 9.7838 8.4615 2.9813 19 6 10.0645 9.8651 4.0085 20 1 9.3618 10.1109 4.7910 21 6 11.1887 10.6552 3.8122 22 7 12.0448 10.3560 2.8582 23 14 11.4866 12.1429 4.9017 24 1 12.7458 12.8139 4.4898 25 1 11.5980 11.7061 6.3166 26 1 10.3527 13.0921 4.7644 27 6 4.7885 4.9876 1.9995 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8932 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6784 2.1187 -0.7443 34 1 3.3529 1.1088 2.8814 35 1 3.0845 -0.1720 1.6750 36 1 4.6045 0.7542 1.6665 37 1 5.4576 1.9410 2.2790 38 1 4.2479 2.3284 3.5342 39 1 6.9273 3.0602 3.6989 40 1 5.6073 3.9619 4.5102 41 1 5.1131 7.2338 4.0294 42 1 5.3190 5.6942 4.8984 43 1 6.4917 7.0125 5.1332 44 1 8.3823 7.6147 4.7412 45 1 7.4673 8.6319 3.6026 46 1 11.8903 9.5832 2.2926 47 1 4.1730 5.5725 2.6830 48 1 4.8376 5.4711 1.0238 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720354043.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:17 Heat of formation + Delta-G solvation = -67.176490 kcal Electronic energy + Delta-G solvation = -26907.077001 eV Core-core repulsion = 23088.121527 eV Total energy + Delta-G solvation = -3818.955473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -41.75292 -40.78745 -38.76147 -37.18197 -36.31155 -34.75059 -33.25522 -32.14740 -30.93017 -29.59794 -28.03205 -27.77386 -27.09283 -25.81006 -23.94759 -22.59194 -21.26385 -20.70917 -20.13123 -19.47833 -18.60402 -17.85152 -17.42804 -17.16453 -16.95474 -16.83681 -16.14277 -15.70307 -15.35556 -15.27351 -15.08282 -14.93532 -14.76496 -14.54073 -14.45245 -14.19930 -13.93376 -13.89615 -13.64359 -13.56893 -13.52087 -13.24495 -13.08153 -12.99164 -12.73929 -12.62314 -12.24838 -12.08769 -11.95371 -11.73106 -11.56826 -11.51508 -11.09702 -11.07128 -10.97739 -10.32733 -10.24159 -9.87922 -9.53976 -8.92607 -8.88554 -6.28344 0.30653 1.10768 1.38973 1.51162 1.60946 1.66516 1.81212 2.09467 2.14102 2.34015 3.02375 3.07741 3.25723 3.37003 3.61945 3.62991 3.88578 3.92843 4.02548 4.06444 4.09710 4.11515 4.22959 4.30103 4.34062 4.40607 4.47187 4.52089 4.58671 4.62999 4.67841 4.78530 4.84747 4.86136 4.95332 5.02392 5.06175 5.07688 5.09804 5.17779 5.33309 5.42442 5.56708 5.63425 5.63902 6.09514 6.14543 6.36452 6.96306 6.98103 7.06247 8.50705 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.036314 B = 0.001807 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.874820 B =15493.434197 C =15538.531746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C -0.069 4.069 4 C -0.195 4.195 5 C -0.132 4.132 6 C 0.558 3.442 7 O -0.597 6.597 8 N -0.611 5.611 9 C 0.093 3.907 10 C -0.136 4.136 11 C 0.128 3.872 12 H 0.087 0.913 13 N -0.597 5.597 14 C 0.063 3.937 15 C 0.533 3.467 16 O -0.564 6.564 17 C -0.102 4.102 18 S -0.199 6.199 19 C -0.613 4.613 20 H 0.077 0.923 21 C -0.019 4.019 22 N -0.913 5.913 23 Si 1.137 2.863 24 H -0.281 1.281 25 H -0.261 1.261 26 H -0.264 1.264 27 C 0.102 3.898 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.116 0.884 45 H 0.108 0.892 46 H 0.260 0.740 47 H 0.085 0.915 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.830 -24.360 5.628 34.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.141 4.141 3 C -0.089 4.089 4 C -0.197 4.197 5 C -0.187 4.187 6 C 0.351 3.649 7 O -0.479 6.479 8 N -0.343 5.343 9 C -0.028 4.028 10 C -0.174 4.174 11 C 0.023 3.977 12 H 0.105 0.895 13 N -0.330 5.330 14 C -0.078 4.078 15 C 0.321 3.679 16 O -0.442 6.442 17 C -0.254 4.254 18 S 0.028 5.972 19 C -0.760 4.760 20 H 0.095 0.905 21 C -0.222 4.222 22 N -0.548 5.548 23 Si 0.954 3.046 24 H -0.206 1.206 25 H -0.186 1.186 26 H -0.189 1.189 27 C -0.022 4.022 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.128 0.872 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.085 0.915 42 H 0.126 0.874 43 H 0.102 0.898 44 H 0.134 0.866 45 H 0.127 0.873 46 H 0.071 0.929 47 H 0.104 0.896 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.179 -23.371 4.180 32.490 hybrid contribution -1.533 -0.028 0.014 1.534 sum -23.713 -23.399 4.193 33.577 Atomic orbital electron populations 1.21720 0.94181 1.02882 1.01846 1.21017 0.96712 0.91535 1.04857 1.23750 0.91899 0.98845 0.94436 1.21400 1.03260 0.91749 1.03329 1.21555 1.01325 0.97505 0.98346 1.18824 0.78079 0.90021 0.77949 1.90774 1.54630 1.55693 1.46822 1.48284 1.36736 1.10461 1.38858 1.22943 0.94698 0.93437 0.91752 1.23137 1.00585 0.94725 0.98949 1.22102 0.94275 0.85528 0.95792 0.89483 1.47599 1.22766 1.27783 1.34880 1.22192 0.96114 1.01306 0.88224 1.20144 0.80693 0.84101 0.82944 1.90687 1.55418 1.66777 1.31337 1.23229 1.00507 0.98034 1.03598 1.85099 1.27377 1.35386 1.49350 1.24026 1.15383 1.14558 1.22081 0.90514 1.27839 0.91197 1.04517 0.98644 1.70923 1.37346 1.27916 1.18665 0.82718 0.76963 0.70989 0.73921 1.20644 1.18553 1.18908 1.22373 0.94028 0.84859 1.00976 0.93065 0.90458 0.93000 0.89077 0.88077 0.88125 0.89471 0.88657 0.89576 0.88471 0.87160 0.88263 0.87542 0.91454 0.87406 0.89767 0.86561 0.87338 0.92918 0.89648 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 71.98 0.71 -0.45 16 2 C -0.10 -0.83 6.13 29.85 0.18 -0.65 16 3 C -0.07 -1.06 9.06 24.52 0.22 -0.84 16 4 C -0.19 -3.13 5.99 -18.70 -0.11 -3.24 16 5 C -0.13 -0.93 8.01 71.24 0.57 -0.35 16 6 C 0.56 13.55 7.78 86.57 0.67 14.23 16 7 O -0.60 -20.24 16.55 -4.08 -0.07 -20.31 16 8 N -0.61 -12.05 3.33 -815.95 -2.71 -14.77 16 9 C 0.09 0.98 5.18 86.73 0.45 1.43 16 10 C -0.14 -1.67 6.50 31.78 0.21 -1.46 16 11 C 0.13 2.85 3.45 46.38 0.16 3.01 16 12 H 0.09 2.53 7.01 -2.39 -0.02 2.51 16 13 N -0.60 -14.93 2.91 -814.87 -2.37 -17.30 16 14 C 0.06 1.00 9.05 127.77 1.16 2.15 16 15 C 0.53 19.57 7.69 87.66 0.67 20.24 16 16 O -0.56 -26.04 15.24 -3.03 -0.05 -26.08 16 17 C -0.10 -4.01 4.71 71.24 0.34 -3.67 16 18 S -0.20 -10.95 19.60 -56.49 -1.11 -12.06 16 19 C -0.61 -35.16 9.50 67.95 0.65 -34.52 16 20 H 0.08 4.09 7.80 -2.91 -0.02 4.07 16 21 C -0.02 -1.09 5.49 84.86 0.47 -0.63 16 22 N -0.91 -58.17 13.67 21.65 0.30 -57.87 16 23 Si 1.14 48.99 29.92 68.60 2.05 51.05 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 26 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 27 C 0.10 2.33 6.48 86.85 0.56 2.89 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.45 16 31 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.10 0.44 5.18 -2.39 -0.01 0.43 16 33 H 0.10 2.02 7.55 -2.91 -0.02 2.00 16 34 H 0.09 0.38 5.89 -2.39 -0.01 0.36 16 35 H 0.10 0.33 5.08 -2.39 -0.01 0.32 16 36 H 0.09 0.50 5.90 -2.39 -0.01 0.49 16 37 H 0.10 0.79 5.74 -2.38 -0.01 0.78 16 38 H 0.11 0.56 6.16 -2.39 -0.01 0.55 16 39 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.11 0.88 6.12 -2.39 -0.01 0.87 16 41 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 42 H 0.11 0.98 6.12 -2.39 -0.01 0.97 16 43 H 0.08 1.31 6.44 -2.39 -0.02 1.30 16 44 H 0.12 4.01 7.40 -2.39 -0.02 3.99 16 45 H 0.11 3.91 8.11 -2.39 -0.02 3.89 16 46 H 0.26 17.25 7.13 -92.71 -0.66 16.59 16 47 H 0.09 1.73 7.15 -2.38 -0.02 1.71 16 48 H 0.05 1.47 8.09 -2.39 -0.02 1.45 16 Total: -1.00 -87.69 389.10 4.03 -83.66 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.08 Total: 15.55 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 6.91 Total: -1.86 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -4.79 Total: -89.94 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -0.11 Total: -46.39 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.05 Total: 51.05 kcal Atomic # 16 Polarization: -10.95 SS G_CDS: -1.11 Total: -12.06 kcal Total: -87.69 4.03 -83.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720354043.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.479 kcal (2) G-P(sol) polarization free energy of solvation -87.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds