Wall clock time and date at job start Sat Apr 11 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50698 * 109.47296 * 2 1 4 4 C 1.32992 * 119.99900 * 122.94658 * 3 2 1 5 5 C 1.50703 * 120.00006 * 175.25811 * 4 3 2 6 6 C 1.47098 * 120.00031 * 355.25288 * 4 3 2 7 7 O 1.21612 * 120.00436 * 263.14752 * 6 4 3 8 8 N 1.34779 * 120.00056 * 83.14933 * 6 4 3 9 9 C 1.43525 * 119.01682 * 174.83673 * 8 6 4 10 10 C 1.53793 * 107.93488 * 273.72244 * 9 8 6 11 11 C 1.47140 * 111.77919 * 281.56078 * 10 9 8 12 12 N 1.48210 * 110.34475 * 58.33095 * 11 10 9 13 13 C 1.34770 * 119.97206 * 102.46504 * 12 11 10 14 14 O 1.21285 * 120.00037 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00516 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.47629 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00254 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99690 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99867 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00385 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99592 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47551 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47188 * 119.99860 * 21 19 17 24 24 H 1.48504 * 109.46857 * 239.99818 * 21 19 17 25 25 C 1.43625 * 120.05860 * 282.48722 * 12 11 10 26 26 C 1.48861 * 118.93589 * 354.83378 * 8 6 4 27 27 H 1.09002 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46883 * 299.99921 * 1 2 3 29 29 H 1.09003 * 109.47780 * 59.99790 * 1 2 3 30 30 H 1.09008 * 109.46883 * 240.00079 * 2 1 3 31 31 H 1.08991 * 109.47384 * 120.00400 * 2 1 3 32 32 H 1.08007 * 120.00289 * 302.94584 * 3 2 1 33 33 H 1.09000 * 109.46851 * 275.07492 * 5 4 3 34 34 H 1.09000 * 109.47135 * 35.06970 * 5 4 3 35 35 H 1.09000 * 109.47069 * 155.07885 * 5 4 3 36 36 H 1.09003 * 109.83852 * 154.07614 * 9 8 6 37 37 H 1.08999 * 109.71588 * 33.29498 * 9 8 6 38 38 H 1.08994 * 109.00534 * 160.98806 * 10 9 8 39 39 H 1.09001 * 109.00676 * 42.12580 * 10 9 8 40 40 H 1.08991 * 109.32830 * 178.60130 * 11 10 9 41 41 H 1.09004 * 109.31968 * 298.06910 * 11 10 9 42 42 H 1.09005 * 109.46672 * 300.00329 * 15 13 12 43 43 H 1.09003 * 109.46920 * 59.99847 * 15 13 12 44 44 H 0.96993 * 120.00047 * 179.97438 * 20 19 17 45 45 H 1.08997 * 108.87442 * 211.45035 * 25 12 11 46 46 H 1.09000 * 108.87318 * 329.98855 * 25 12 11 47 47 H 1.08999 * 109.48327 * 20.63921 * 26 8 6 48 48 H 1.09003 * 109.48021 * 260.60471 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8445 1.8389 0.9665 5 6 3.4321 3.2255 0.9098 6 6 3.1692 0.9479 2.0911 7 8 2.5545 1.0392 3.1364 8 7 4.1482 0.0305 1.9630 9 6 4.5237 -0.7512 3.1066 10 6 5.5746 0.0439 3.8995 11 6 6.9076 -0.0475 3.2833 12 7 6.8667 0.4554 1.8897 13 6 7.3380 1.6852 1.6037 14 8 7.7949 2.3800 2.4865 15 6 7.2963 2.1975 0.1870 16 16 7.9953 3.8660 0.1279 17 6 7.8262 4.2079 -1.5923 18 1 7.3914 3.4693 -2.2494 19 6 8.2518 5.4263 -2.1028 20 7 8.7822 6.3264 -1.3020 21 14 8.0719 5.7889 -3.9264 22 1 7.4513 4.6226 -4.6043 23 1 7.2111 6.9849 -4.1108 24 1 9.4110 6.0475 -4.5141 25 6 6.3248 -0.3665 0.8439 26 6 4.8064 -0.1404 0.6388 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3635 0.5139 -0.8900 30 1 1.8932 -0.5139 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.7327 2.0995 -0.7849 33 1 4.3345 3.2128 0.2985 34 1 2.7060 3.9101 0.4715 35 1 3.6810 3.5562 1.9181 36 1 4.9480 -1.7014 2.7821 37 1 3.6493 -0.9318 3.7318 38 1 5.6251 -0.3488 4.9149 39 1 5.2726 1.0906 3.9385 40 1 7.6138 0.5484 3.8613 41 1 7.2337 -1.0876 3.2820 42 1 7.8779 1.5365 -0.4556 43 1 6.2631 2.2243 -0.1593 44 1 9.0800 7.1777 -1.6589 45 1 6.8440 -0.1400 -0.0873 46 1 6.4932 -1.4136 1.0954 47 1 4.6503 0.7549 0.0370 48 1 4.3765 -1.0018 0.1276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720382301.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:31 Heat of formation + Delta-G solvation = -53.436925 kcal Electronic energy + Delta-G solvation = -29140.768309 eV Core-core repulsion = 25322.408628 eV Total energy + Delta-G solvation = -3818.359681 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = -0.02 seconds Orbital eigenvalues (eV) -40.87325 -39.41096 -36.99979 -35.98509 -34.38254 -33.57664 -32.46549 -32.25703 -29.41809 -28.47790 -27.07198 -26.51891 -25.50677 -23.82354 -22.85549 -22.31989 -20.92167 -19.22675 -18.38120 -17.59460 -17.02426 -16.69262 -16.37099 -15.96003 -15.61164 -15.21879 -14.84121 -14.71583 -14.31991 -14.15230 -13.87327 -13.64909 -13.51286 -13.23723 -13.17234 -13.07807 -12.80465 -12.66788 -12.62092 -12.24542 -12.12826 -11.98571 -11.90468 -11.52268 -11.33779 -11.25425 -11.12012 -11.10553 -11.06317 -11.03854 -10.77909 -9.85655 -9.83561 -9.41387 -9.11112 -9.02481 -8.84012 -8.56005 -8.25566 -6.54276 -6.25281 -3.96227 1.71699 2.51570 2.78675 2.99093 3.03212 3.18324 3.23921 3.27922 3.55409 4.16205 4.29850 4.52145 4.61690 4.67794 4.75516 4.82444 4.88552 4.99853 5.08626 5.10097 5.12021 5.25896 5.27979 5.31545 5.35910 5.40363 5.48232 5.49531 5.60054 5.61027 5.68299 5.71561 5.75657 5.79833 5.87054 5.92128 5.95938 6.02959 6.13078 6.17516 6.32749 6.49772 6.55824 6.62223 7.15283 7.52048 7.56045 8.08475 8.31304 8.50987 9.20247 10.82058 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.004076 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.845830 B = 6868.559069 C = 8501.408998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 C -0.125 4.125 4 C -0.155 4.155 5 C -0.109 4.109 6 C 0.562 3.438 7 O -0.538 6.538 8 N -0.600 5.600 9 C 0.120 3.880 10 C -0.157 4.157 11 C 0.119 3.881 12 N -0.610 5.610 13 C 0.533 3.467 14 O -0.512 6.512 15 C -0.151 4.151 16 S -0.059 6.059 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.075 3.925 20 N -0.866 5.866 21 Si 0.916 3.084 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.099 3.901 26 C 0.085 3.915 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.268 0.732 45 H 0.093 0.907 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.501 -18.382 2.336 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.139 4.139 3 C -0.144 4.144 4 C -0.158 4.158 5 C -0.166 4.166 6 C 0.351 3.649 7 O -0.415 6.415 8 N -0.333 5.333 9 C -0.004 4.004 10 C -0.196 4.196 11 C -0.003 4.003 12 N -0.346 5.346 13 C 0.321 3.679 14 O -0.386 6.386 15 C -0.302 4.302 16 S 0.168 5.832 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.501 5.501 21 Si 0.743 3.257 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.027 4.027 26 C -0.038 4.038 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.144 0.856 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.078 0.922 45 H 0.111 0.889 46 H 0.097 0.903 47 H 0.109 0.891 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.029 -17.146 4.251 20.826 hybrid contribution -0.631 -0.548 -2.314 2.461 sum -11.661 -17.694 1.937 21.279 Atomic orbital electron populations 1.21682 0.94733 1.01678 1.02238 1.20758 0.96736 0.94053 1.02370 1.23317 0.96710 0.97285 0.97112 1.21606 1.01307 0.97830 0.95019 1.20744 1.01339 0.90943 1.03553 1.18619 0.78882 0.79610 0.87795 1.90792 1.51289 1.69926 1.29466 1.47768 1.36526 1.38065 1.10972 1.21059 0.98380 0.93649 0.87307 1.21530 0.95806 1.02609 0.99695 1.20618 0.97703 0.99446 0.82495 1.47551 1.62357 1.16534 1.08140 1.20377 0.76456 0.80191 0.90844 1.90699 1.44094 1.55262 1.48540 1.23598 1.05131 1.06319 0.95103 1.85487 1.79421 1.06523 1.11770 1.22871 1.47731 1.04424 0.93234 0.90937 1.24974 0.94510 0.95110 0.98858 1.70021 1.38316 1.06723 1.35087 0.86154 0.78066 0.78411 0.83090 1.19607 1.20562 1.20584 1.21560 0.92562 0.95784 0.92824 1.23079 0.93215 1.03335 0.84201 0.92601 0.92478 0.92387 0.90485 0.91713 0.85578 0.89855 0.90815 0.91506 0.90483 0.89770 0.90149 0.90950 0.89009 0.91291 0.89321 0.89556 0.92218 0.88907 0.90336 0.89061 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 37.15 0.37 -0.84 16 2 C -0.10 -0.92 5.91 -27.89 -0.16 -1.08 16 3 C -0.13 -1.32 8.89 -36.13 -0.32 -1.64 16 4 C -0.15 -2.00 3.76 -102.85 -0.39 -2.39 16 5 C -0.11 -1.54 10.02 36.01 0.36 -1.17 16 6 C 0.56 7.95 4.86 -12.67 -0.06 7.89 16 7 O -0.54 -9.45 16.58 5.27 0.09 -9.36 16 8 N -0.60 -6.76 2.32 -173.79 -0.40 -7.16 16 9 C 0.12 1.19 5.38 -5.20 -0.03 1.16 16 10 C -0.16 -1.75 5.64 -29.13 -0.16 -1.92 16 11 C 0.12 1.36 5.69 -5.91 -0.03 1.32 16 12 N -0.61 -7.97 2.46 -176.66 -0.43 -8.41 16 13 C 0.53 9.67 7.69 -10.99 -0.08 9.58 16 14 O -0.51 -11.46 15.30 5.55 0.08 -11.38 16 15 C -0.15 -2.87 4.71 36.01 0.17 -2.70 16 16 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 17 C -0.53 -14.55 9.50 30.94 0.29 -14.25 16 18 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 20 N -0.87 -25.51 13.22 55.49 0.73 -24.78 16 21 Si 0.92 20.75 29.55 -169.99 -5.02 15.72 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.10 0.92 5.05 -4.57 -0.02 0.90 16 26 C 0.09 0.78 6.15 -1.74 -0.01 0.77 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.06 0.66 6.15 -51.93 -0.32 0.34 16 32 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 33 H 0.08 1.26 7.44 -51.93 -0.39 0.87 16 34 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 35 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 36 H 0.08 0.55 7.58 -51.93 -0.39 0.16 16 37 H 0.08 0.92 7.34 -51.93 -0.38 0.54 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.10 7.89 -51.93 -0.41 0.69 16 40 H 0.09 1.24 7.12 -51.93 -0.37 0.87 16 41 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 42 H 0.09 1.55 7.37 -51.91 -0.38 1.16 16 43 H 0.09 1.50 6.62 -51.91 -0.34 1.16 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.09 0.84 6.38 -51.93 -0.33 0.51 16 46 H 0.08 0.52 7.72 -51.93 -0.40 0.12 16 47 H 0.09 0.95 5.51 -51.93 -0.29 0.66 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 394.34 15.07 5.94 5.94 Total: -1.00 -35.40 394.34 -9.17 -44.57 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.77 Total: 1.00 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -0.18 Total: -2.41 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: -0.10 Total: -40.35 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.17 Total: -20.74 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.40 -9.17 -44.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720382301.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.869 kcal (2) G-P(sol) polarization free energy of solvation -35.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.02 seconds