Wall clock time and date at job start Sat Apr 11 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50698 * 109.47296 * 2 1 4 4 C 1.32992 * 119.99900 * 122.94658 * 3 2 1 5 5 C 1.50703 * 120.00006 * 175.25811 * 4 3 2 6 6 C 1.47098 * 120.00031 * 355.25288 * 4 3 2 7 7 O 1.21612 * 120.00436 * 263.14752 * 6 4 3 8 8 N 1.34779 * 120.00056 * 83.14933 * 6 4 3 9 9 C 1.43525 * 119.01682 * 174.83673 * 8 6 4 10 10 C 1.53793 * 107.93488 * 273.72244 * 9 8 6 11 11 C 1.47140 * 111.77919 * 281.56078 * 10 9 8 12 12 N 1.48210 * 110.34475 * 58.33095 * 11 10 9 13 13 C 1.34770 * 119.97206 * 102.46504 * 12 11 10 14 14 O 1.21285 * 120.00037 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00516 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.47629 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00254 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99690 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99867 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00385 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99592 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47551 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47188 * 119.99860 * 21 19 17 24 24 H 1.48504 * 109.46857 * 239.99818 * 21 19 17 25 25 C 1.43625 * 120.05860 * 282.48722 * 12 11 10 26 26 C 1.48861 * 118.93589 * 354.83378 * 8 6 4 27 27 H 1.09002 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46883 * 299.99921 * 1 2 3 29 29 H 1.09003 * 109.47780 * 59.99790 * 1 2 3 30 30 H 1.09008 * 109.46883 * 240.00079 * 2 1 3 31 31 H 1.08991 * 109.47384 * 120.00400 * 2 1 3 32 32 H 1.08007 * 120.00289 * 302.94584 * 3 2 1 33 33 H 1.09000 * 109.46851 * 275.07492 * 5 4 3 34 34 H 1.09000 * 109.47135 * 35.06970 * 5 4 3 35 35 H 1.09000 * 109.47069 * 155.07885 * 5 4 3 36 36 H 1.09003 * 109.83852 * 154.07614 * 9 8 6 37 37 H 1.08999 * 109.71588 * 33.29498 * 9 8 6 38 38 H 1.08994 * 109.00534 * 160.98806 * 10 9 8 39 39 H 1.09001 * 109.00676 * 42.12580 * 10 9 8 40 40 H 1.08991 * 109.32830 * 178.60130 * 11 10 9 41 41 H 1.09004 * 109.31968 * 298.06910 * 11 10 9 42 42 H 1.09005 * 109.46672 * 300.00329 * 15 13 12 43 43 H 1.09003 * 109.46920 * 59.99847 * 15 13 12 44 44 H 0.96993 * 120.00047 * 179.97438 * 20 19 17 45 45 H 1.08997 * 108.87442 * 211.45035 * 25 12 11 46 46 H 1.09000 * 108.87318 * 329.98855 * 25 12 11 47 47 H 1.08999 * 109.48327 * 20.63921 * 26 8 6 48 48 H 1.09003 * 109.48021 * 260.60471 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8445 1.8389 0.9665 5 6 3.4321 3.2255 0.9098 6 6 3.1692 0.9479 2.0911 7 8 2.5545 1.0392 3.1364 8 7 4.1482 0.0305 1.9630 9 6 4.5237 -0.7512 3.1066 10 6 5.5746 0.0439 3.8995 11 6 6.9076 -0.0475 3.2833 12 7 6.8667 0.4554 1.8897 13 6 7.3380 1.6852 1.6037 14 8 7.7949 2.3800 2.4865 15 6 7.2963 2.1975 0.1870 16 16 7.9953 3.8660 0.1279 17 6 7.8262 4.2079 -1.5923 18 1 7.3914 3.4693 -2.2494 19 6 8.2518 5.4263 -2.1028 20 7 8.7822 6.3264 -1.3020 21 14 8.0719 5.7889 -3.9264 22 1 7.4513 4.6226 -4.6043 23 1 7.2111 6.9849 -4.1108 24 1 9.4110 6.0475 -4.5141 25 6 6.3248 -0.3665 0.8439 26 6 4.8064 -0.1404 0.6388 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3635 0.5139 -0.8900 30 1 1.8932 -0.5139 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.7327 2.0995 -0.7849 33 1 4.3345 3.2128 0.2985 34 1 2.7060 3.9101 0.4715 35 1 3.6810 3.5562 1.9181 36 1 4.9480 -1.7014 2.7821 37 1 3.6493 -0.9318 3.7318 38 1 5.6251 -0.3488 4.9149 39 1 5.2726 1.0906 3.9385 40 1 7.6138 0.5484 3.8613 41 1 7.2337 -1.0876 3.2820 42 1 7.8779 1.5365 -0.4556 43 1 6.2631 2.2243 -0.1593 44 1 9.0800 7.1777 -1.6589 45 1 6.8440 -0.1400 -0.0873 46 1 6.4932 -1.4136 1.0954 47 1 4.6503 0.7549 0.0370 48 1 4.3765 -1.0018 0.1276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720382301.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:29 Heat of formation + Delta-G solvation = -75.964310 kcal Electronic energy + Delta-G solvation = -29141.745170 eV Core-core repulsion = 25322.408628 eV Total energy + Delta-G solvation = -3819.336542 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.89065 -40.64486 -38.17076 -36.92716 -35.49545 -34.55267 -34.47840 -33.12524 -30.84175 -29.45613 -28.05971 -27.69298 -27.32310 -24.75809 -23.89498 -23.13918 -21.79523 -20.51287 -19.72804 -19.04263 -18.12797 -17.88349 -17.42667 -16.91176 -16.85634 -16.75864 -16.35885 -15.90955 -15.55125 -15.34602 -14.83009 -14.78851 -14.57729 -14.44672 -14.22476 -14.14569 -13.97439 -13.80510 -13.59553 -13.42423 -13.29296 -13.11300 -12.95561 -12.91387 -12.88814 -12.58056 -12.36689 -12.16509 -12.02195 -11.97716 -11.87282 -11.66026 -11.13440 -10.94968 -10.85191 -10.21512 -9.97981 -9.83645 -9.56992 -8.64146 -8.31626 -6.09388 0.81076 1.27705 1.42987 1.46424 1.48078 1.56788 1.60159 1.99681 2.22957 2.29547 3.03324 3.28539 3.42720 3.66066 3.76917 3.86101 3.91743 3.95704 4.10513 4.15109 4.24151 4.28222 4.38643 4.39941 4.42484 4.49026 4.53206 4.55066 4.64463 4.67643 4.72786 4.75292 4.81235 4.84392 4.96348 4.99249 5.05243 5.14158 5.18792 5.29450 5.44722 5.45375 5.56722 5.60183 5.68428 6.19543 6.23197 6.35482 7.08473 7.10231 7.16538 8.77705 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.004076 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.845830 B = 6868.559069 C = 8501.408998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C -0.095 4.095 4 C -0.188 4.188 5 C -0.100 4.100 6 C 0.558 3.442 7 O -0.586 6.586 8 N -0.595 5.595 9 C 0.120 3.880 10 C -0.149 4.149 11 C 0.119 3.881 12 N -0.596 5.596 13 C 0.529 3.471 14 O -0.569 6.569 15 C -0.121 4.121 16 S -0.155 6.155 17 C -0.537 4.537 18 H 0.086 0.914 19 C 0.014 3.986 20 N -0.913 5.913 21 Si 0.995 3.005 22 H -0.252 1.252 23 H -0.277 1.277 24 H -0.277 1.277 25 C 0.086 3.914 26 C 0.083 3.917 27 H 0.069 0.931 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.053 0.947 32 H 0.142 0.858 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.034 0.966 36 H 0.123 0.877 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.019 0.981 40 H 0.062 0.938 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.269 0.731 45 H 0.101 0.899 46 H 0.125 0.875 47 H 0.077 0.923 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.673 -22.436 -0.599 25.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C -0.114 4.114 4 C -0.191 4.191 5 C -0.157 4.157 6 C 0.347 3.653 7 O -0.467 6.467 8 N -0.326 5.326 9 C -0.003 4.003 10 C -0.189 4.189 11 C -0.002 4.002 12 N -0.329 5.329 13 C 0.317 3.683 14 O -0.447 6.447 15 C -0.272 4.272 16 S 0.072 5.928 17 C -0.685 4.685 18 H 0.104 0.896 19 C -0.190 4.190 20 N -0.550 5.550 21 Si 0.817 3.183 22 H -0.175 1.175 23 H -0.203 1.203 24 H -0.203 1.203 25 C -0.038 4.038 26 C -0.040 4.040 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.124 0.876 31 H 0.072 0.928 32 H 0.159 0.841 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.053 0.947 36 H 0.141 0.859 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.038 0.962 40 H 0.081 0.919 41 H 0.137 0.863 42 H 0.130 0.870 43 H 0.122 0.878 44 H 0.078 0.922 45 H 0.119 0.881 46 H 0.143 0.857 47 H 0.095 0.905 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.206 -21.282 1.288 24.567 hybrid contribution -0.335 0.579 -1.347 1.504 sum -12.541 -20.703 -0.059 24.205 Atomic orbital electron populations 1.21673 0.94142 1.02558 1.01843 1.20833 0.97135 0.92735 1.03127 1.23654 0.93613 0.98407 0.95727 1.21412 1.04127 0.97124 0.96449 1.20587 1.01179 0.92670 1.01270 1.18846 0.79136 0.79968 0.87318 1.90752 1.53325 1.71378 1.31241 1.47877 1.35397 1.37068 1.12227 1.21203 0.97582 0.94804 0.86729 1.21464 0.96109 0.99798 1.01500 1.20798 0.97083 1.01342 0.80986 1.47560 1.60523 1.14861 1.09985 1.20282 0.76621 0.81580 0.89777 1.90682 1.47088 1.57314 1.49658 1.23388 1.05615 1.01537 0.96665 1.85744 1.80836 1.13173 1.13047 1.23187 1.47330 1.04905 0.93036 0.89616 1.26085 0.93928 0.94827 1.04184 1.70199 1.39834 1.07350 1.37624 0.84959 0.78122 0.78722 0.76502 1.17499 1.20266 1.20259 1.21997 0.92381 0.97379 0.92016 1.23306 0.93031 1.04560 0.83065 0.91158 0.94495 0.91173 0.87553 0.92849 0.84074 0.91470 0.89576 0.94723 0.85925 0.90880 0.88035 0.96244 0.91926 0.86294 0.87013 0.87812 0.92186 0.88071 0.85749 0.90457 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.89 71.98 0.71 -1.30 16 2 C -0.10 -1.48 5.91 29.84 0.18 -1.31 16 3 C -0.10 -1.81 8.89 24.52 0.22 -1.59 16 4 C -0.19 -4.85 3.76 -18.70 -0.07 -4.92 16 5 C -0.10 -2.99 10.02 71.24 0.71 -2.27 16 6 C 0.56 15.86 4.86 86.57 0.42 16.28 16 7 O -0.59 -21.53 16.58 -4.07 -0.07 -21.60 16 8 N -0.59 -12.23 2.32 -821.99 -1.90 -14.13 16 9 C 0.12 2.07 5.38 87.20 0.47 2.54 16 10 C -0.15 -3.22 5.64 29.04 0.16 -3.06 16 11 C 0.12 2.49 5.69 84.23 0.48 2.97 16 12 N -0.60 -14.45 2.46 -831.21 -2.04 -16.50 16 13 C 0.53 19.42 7.69 87.66 0.67 20.09 16 14 O -0.57 -26.97 15.30 -3.04 -0.05 -27.02 16 15 C -0.12 -4.58 4.71 71.24 0.34 -4.25 16 16 S -0.16 -8.43 20.57 -56.49 -1.16 -9.60 16 17 C -0.54 -29.44 9.50 67.95 0.65 -28.79 16 18 H 0.09 4.30 7.80 -2.91 -0.02 4.28 16 19 C 0.01 0.79 5.49 84.86 0.47 1.26 16 20 N -0.91 -55.47 13.22 21.65 0.29 -55.19 16 21 Si 0.99 42.31 29.55 68.60 2.03 44.34 16 22 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 23 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 25 C 0.09 1.22 5.05 87.55 0.44 1.66 16 26 C 0.08 1.19 6.15 86.56 0.53 1.72 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.05 0.94 6.15 -2.39 -0.01 0.93 16 32 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 33 H 0.07 2.15 7.44 -2.39 -0.02 2.13 16 34 H 0.09 2.24 8.11 -2.39 -0.02 2.22 16 35 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 36 H 0.12 1.04 7.58 -2.39 -0.02 1.02 16 37 H 0.07 1.49 7.34 -2.39 -0.02 1.47 16 38 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 39 H 0.02 0.62 7.89 -2.39 -0.02 0.60 16 40 H 0.06 1.72 7.12 -2.39 -0.02 1.71 16 41 H 0.12 1.40 8.05 -2.39 -0.02 1.38 16 42 H 0.11 3.70 7.37 -2.39 -0.02 3.68 16 43 H 0.10 3.55 6.62 -2.39 -0.02 3.54 16 44 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 45 H 0.10 1.35 6.38 -2.39 -0.02 1.33 16 46 H 0.12 0.75 7.72 -2.39 -0.02 0.74 16 47 H 0.08 1.39 5.51 -2.39 -0.01 1.37 16 48 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -85.90 394.34 4.42 -81.48 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.95 Total: 19.19 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 6.38 Total: -0.97 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -3.66 Total: -85.82 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -0.11 Total: -48.62 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.60 kcal Total: -85.90 4.42 -81.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720382301.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.514 kcal (2) G-P(sol) polarization free energy of solvation -85.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds