Wall clock time and date at job start Sat Apr 11 2020 06:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00368 * 2 1 4 4 C 1.52995 * 109.47656 * 124.99363 * 3 2 1 5 5 C 1.52995 * 109.47625 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47310 * 180.02562 * 5 4 3 7 7 O 1.21277 * 120.00105 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99862 * 179.97438 * 6 5 4 9 9 C 1.46920 * 120.63221 * 359.97438 * 8 6 5 10 10 C 1.53196 * 108.77435 * 126.41518 * 9 8 6 11 11 C 1.53037 * 109.31040 * 54.63686 * 10 9 8 12 12 C 1.53040 * 109.54181 * 298.63376 * 11 10 9 13 13 H 1.09004 * 109.52641 * 301.40586 * 12 11 10 14 14 N 1.46498 * 109.50473 * 181.31814 * 12 11 10 15 15 C 1.34775 * 119.99775 * 85.15751 * 14 12 11 16 16 O 1.21281 * 120.00293 * 0.02562 * 15 14 12 17 17 C 1.50703 * 119.99741 * 180.02562 * 15 14 12 18 18 S 1.81000 * 109.47187 * 180.02562 * 17 15 14 19 19 C 1.76194 * 100.00188 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00054 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00234 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99775 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00088 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46863 * 60.00560 * 23 21 19 25 25 H 1.48501 * 109.47136 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47160 * 300.00239 * 23 21 19 27 27 C 1.46926 * 120.62827 * 180.02562 * 8 6 5 28 28 H 1.07999 * 120.00311 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99758 * 0.02562 * 1 2 3 30 30 H 1.08006 * 119.99758 * 179.97438 * 2 1 3 31 31 H 1.09010 * 109.47203 * 4.99410 * 3 2 1 32 32 H 1.08998 * 109.47282 * 244.99937 * 3 2 1 33 33 H 1.09003 * 109.47110 * 59.99845 * 4 3 2 34 34 H 1.08998 * 109.47244 * 300.00597 * 4 3 2 35 35 H 1.08996 * 109.47391 * 60.00033 * 5 4 3 36 36 H 1.09003 * 109.46696 * 300.00325 * 5 4 3 37 37 H 1.08998 * 109.58534 * 6.63082 * 9 8 6 38 38 H 1.08995 * 109.70522 * 246.27224 * 9 8 6 39 39 H 1.08999 * 109.50112 * 174.59220 * 10 9 8 40 40 H 1.09004 * 109.49641 * 294.68461 * 10 9 8 41 41 H 1.09000 * 109.46257 * 58.65576 * 11 10 9 42 42 H 1.09003 * 109.45936 * 178.62016 * 11 10 9 43 43 H 0.97003 * 119.99720 * 265.16840 * 14 12 11 44 44 H 1.08995 * 109.47244 * 300.00776 * 17 15 14 45 45 H 1.09005 * 109.46757 * 60.00767 * 17 15 14 46 46 H 0.96998 * 120.00179 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.58617 * 353.36760 * 27 8 6 48 48 H 1.08995 * 109.59240 * 113.79537 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7996 2.6583 1.1820 6 6 4.7569 2.6857 2.3456 7 8 4.8209 1.7387 3.1005 8 7 5.5419 3.7626 2.5472 9 6 5.4761 4.9171 1.6410 10 6 5.2316 6.1817 2.4704 11 6 6.3077 6.2928 3.5529 12 6 6.2245 5.0810 4.4838 13 1 5.2327 5.0346 4.9336 14 7 7.2343 5.2037 5.5381 15 6 6.9625 5.9116 6.6523 16 8 5.8818 6.4465 6.7825 17 6 8.0015 6.0383 7.7365 18 16 7.3406 7.0404 9.0912 19 6 8.7220 7.0257 10.1849 20 1 9.6216 6.4943 9.9114 21 6 8.6545 7.6978 11.3974 22 7 7.5583 8.3459 11.7304 23 14 10.1188 7.6815 12.5571 24 1 11.2945 8.2834 11.8784 25 1 9.7943 8.4666 13.7751 26 1 10.4314 6.2813 12.9401 27 6 6.4805 3.8037 3.6768 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3586 2.1317 0.0895 32 1 2.6214 1.4025 -0.9313 33 1 3.7399 0.5065 1.0922 34 1 2.4772 1.2356 2.1130 35 1 3.0945 3.4846 1.2717 36 1 4.3574 2.7561 0.2506 37 1 4.6581 4.7803 0.9337 38 1 6.4165 5.0123 1.0982 39 1 5.2763 7.0565 1.8218 40 1 4.2489 6.1252 2.9388 41 1 7.2917 6.3242 3.0849 42 1 6.1505 7.2047 4.1290 43 1 8.0985 4.7757 5.4340 44 1 8.2594 5.0475 8.1103 45 1 8.8929 6.5172 7.3313 46 1 7.5112 8.8159 12.5776 47 1 6.3252 2.9323 4.3129 48 1 7.5039 3.8072 3.3018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720429523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:13 Heat of formation + Delta-G solvation = -72.456291 kcal Electronic energy + Delta-G solvation = -26367.114467 eV Core-core repulsion = 22547.930045 eV Total energy + Delta-G solvation = -3819.184423 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.69624 -39.30798 -37.60095 -36.32735 -34.60226 -32.84013 -32.53596 -32.42804 -30.75744 -28.69151 -27.58287 -25.56491 -25.47293 -23.33582 -22.51329 -21.06218 -20.40411 -20.26122 -19.07590 -17.89500 -17.52007 -16.55722 -16.42720 -16.10309 -15.95028 -15.32670 -15.10784 -14.80362 -14.64510 -14.49155 -14.25385 -13.99063 -13.98340 -13.61807 -13.32832 -13.19349 -13.03335 -12.72830 -12.52480 -12.19800 -12.03206 -11.97929 -11.69261 -11.44572 -11.22194 -11.14775 -11.11034 -11.08037 -11.04420 -11.02741 -10.76943 -10.10357 -9.82887 -9.72156 -9.43038 -9.13465 -9.05488 -8.83302 -8.24511 -6.50228 -6.21494 -3.92256 1.88853 2.31200 2.50953 3.05637 3.08802 3.23766 3.28028 3.32402 3.71446 4.08426 4.20612 4.32632 4.44271 4.52106 4.59146 4.59928 4.67121 4.78005 4.83168 4.92552 5.05554 5.08062 5.08242 5.13641 5.16648 5.21759 5.28176 5.36498 5.40189 5.44712 5.52640 5.60784 5.66985 5.73876 5.74225 5.88112 5.93430 6.00040 6.07684 6.09531 6.13937 6.24212 6.37388 6.60757 7.02998 7.59291 7.66582 7.86267 8.35047 8.58369 9.23696 10.85885 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023561 B = 0.001710 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.096919 B =16371.072603 C =16779.771076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C -0.095 4.095 4 C -0.101 4.101 5 C -0.139 4.139 6 C 0.515 3.485 7 O -0.537 6.537 8 N -0.611 5.611 9 C 0.105 3.895 10 C -0.133 4.133 11 C -0.132 4.132 12 C 0.135 3.865 13 H 0.091 0.909 14 N -0.734 5.734 15 C 0.535 3.465 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.106 3.894 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.398 0.602 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.269 0.731 47 H 0.099 0.901 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.153 -11.188 -28.840 31.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.171 4.171 3 C -0.132 4.132 4 C -0.139 4.139 5 C -0.179 4.179 6 C 0.303 3.697 7 O -0.413 6.413 8 N -0.345 5.345 9 C -0.018 4.018 10 C -0.172 4.172 11 C -0.171 4.171 12 C 0.029 3.971 13 H 0.109 0.891 14 N -0.388 5.388 15 C 0.321 3.679 16 O -0.389 6.389 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.017 4.017 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.232 0.768 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.117 0.883 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.034 -10.695 -28.064 31.089 hybrid contribution 2.685 -0.674 0.546 2.821 sum -5.349 -11.369 -27.518 30.251 Atomic orbital electron populations 1.23870 0.95995 1.01876 1.01539 1.22949 0.96039 0.98554 0.99537 1.20793 0.98190 0.95607 0.98633 1.21309 0.97767 0.96061 0.98794 1.21731 0.98131 1.00827 0.97196 1.20780 0.80580 0.81742 0.86561 1.90722 1.67973 1.35165 1.47466 1.48037 1.40335 1.17486 1.28674 1.21843 1.02688 0.85210 0.92042 1.21903 1.00147 0.97276 0.97860 1.21952 0.98945 0.99435 0.96779 1.21161 0.94239 0.93920 0.87795 0.89077 1.45949 1.18016 1.55871 1.18963 1.20318 0.88562 0.77281 0.81716 1.90702 1.24465 1.45224 1.78519 1.23537 1.00755 1.06063 1.00068 1.85391 1.22114 1.64082 1.11698 1.22830 1.01322 1.38853 1.05496 0.90966 1.24987 0.96858 0.94525 0.97153 1.70006 1.26352 1.31065 1.22873 0.86224 0.81470 0.78361 0.79445 1.19943 1.20802 1.19933 1.21765 0.92682 0.98971 0.88328 0.88565 0.88597 0.87371 0.91395 0.90940 0.91003 0.90922 0.88683 0.88812 0.89424 0.90974 0.90109 0.91002 0.91559 0.90433 0.76774 0.89146 0.89174 0.92124 0.88276 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.17 14.32 29.01 0.42 -0.76 16 2 C -0.15 -0.95 9.52 -36.03 -0.34 -1.29 16 3 C -0.10 -0.51 5.66 -27.89 -0.16 -0.67 16 4 C -0.10 -0.72 4.49 -26.74 -0.12 -0.84 16 5 C -0.14 -0.85 4.05 -27.89 -0.11 -0.96 16 6 C 0.51 5.16 7.70 -10.98 -0.08 5.07 16 7 O -0.54 -7.64 15.39 5.56 0.09 -7.56 16 8 N -0.61 -5.32 2.97 -172.75 -0.51 -5.83 16 9 C 0.10 0.60 6.34 -3.71 -0.02 0.57 16 10 C -0.13 -0.95 6.08 -26.61 -0.16 -1.12 16 11 C -0.13 -1.32 5.46 -26.69 -0.15 -1.46 16 12 C 0.14 1.58 2.61 -67.79 -0.18 1.40 16 13 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 14 N -0.73 -9.57 5.08 -53.67 -0.27 -9.84 16 15 C 0.54 9.85 7.81 -10.98 -0.09 9.76 16 16 O -0.52 -11.57 15.52 5.56 0.09 -11.49 16 17 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 23 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.11 1.04 5.91 -3.69 -0.02 1.02 16 28 H 0.10 0.50 8.06 -52.49 -0.42 0.08 16 29 H 0.10 0.52 7.84 -52.48 -0.41 0.11 16 30 H 0.11 0.63 8.06 -52.48 -0.42 0.21 16 31 H 0.07 0.33 7.79 -51.92 -0.40 -0.07 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.09 0.45 7.69 -51.93 -0.40 0.05 16 36 H 0.09 0.37 7.94 -51.93 -0.41 -0.04 16 37 H 0.09 0.31 5.93 -51.93 -0.31 0.00 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.40 3.97 8.60 -40.82 -0.35 3.62 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 45 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 46 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 47 H 0.10 1.18 7.00 -51.93 -0.36 0.82 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 406.82 15.07 6.13 6.13 Total: -1.00 -36.48 406.82 -9.66 -46.14 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -8.08 Total: 0.47 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.60 Total: -5.13 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: -0.05 Total: -41.15 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.17 Total: -19.05 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.48 -9.66 -46.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720429523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.315 kcal (2) G-P(sol) polarization free energy of solvation -36.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds