Wall clock time and date at job start Sat Apr 11 2020 06:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00368 * 2 1 4 4 C 1.52995 * 109.47656 * 124.99363 * 3 2 1 5 5 C 1.52995 * 109.47625 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47310 * 180.02562 * 5 4 3 7 7 O 1.21277 * 120.00105 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99862 * 179.97438 * 6 5 4 9 9 C 1.46920 * 120.63221 * 359.97438 * 8 6 5 10 10 C 1.53196 * 108.77435 * 126.41518 * 9 8 6 11 11 C 1.53037 * 109.31040 * 54.63686 * 10 9 8 12 12 C 1.53040 * 109.54181 * 298.63376 * 11 10 9 13 13 H 1.09004 * 109.52641 * 301.40586 * 12 11 10 14 14 N 1.46498 * 109.50473 * 181.31814 * 12 11 10 15 15 C 1.34775 * 119.99775 * 85.15751 * 14 12 11 16 16 O 1.21281 * 120.00293 * 0.02562 * 15 14 12 17 17 C 1.50703 * 119.99741 * 180.02562 * 15 14 12 18 18 S 1.81000 * 109.47187 * 180.02562 * 17 15 14 19 19 C 1.76194 * 100.00188 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00054 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00234 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99775 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00088 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46863 * 60.00560 * 23 21 19 25 25 H 1.48501 * 109.47136 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47160 * 300.00239 * 23 21 19 27 27 C 1.46926 * 120.62827 * 180.02562 * 8 6 5 28 28 H 1.07999 * 120.00311 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99758 * 0.02562 * 1 2 3 30 30 H 1.08006 * 119.99758 * 179.97438 * 2 1 3 31 31 H 1.09010 * 109.47203 * 4.99410 * 3 2 1 32 32 H 1.08998 * 109.47282 * 244.99937 * 3 2 1 33 33 H 1.09003 * 109.47110 * 59.99845 * 4 3 2 34 34 H 1.08998 * 109.47244 * 300.00597 * 4 3 2 35 35 H 1.08996 * 109.47391 * 60.00033 * 5 4 3 36 36 H 1.09003 * 109.46696 * 300.00325 * 5 4 3 37 37 H 1.08998 * 109.58534 * 6.63082 * 9 8 6 38 38 H 1.08995 * 109.70522 * 246.27224 * 9 8 6 39 39 H 1.08999 * 109.50112 * 174.59220 * 10 9 8 40 40 H 1.09004 * 109.49641 * 294.68461 * 10 9 8 41 41 H 1.09000 * 109.46257 * 58.65576 * 11 10 9 42 42 H 1.09003 * 109.45936 * 178.62016 * 11 10 9 43 43 H 0.97003 * 119.99720 * 265.16840 * 14 12 11 44 44 H 1.08995 * 109.47244 * 300.00776 * 17 15 14 45 45 H 1.09005 * 109.46757 * 60.00767 * 17 15 14 46 46 H 0.96998 * 120.00179 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.58617 * 353.36760 * 27 8 6 48 48 H 1.08995 * 109.59240 * 113.79537 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7996 2.6583 1.1820 6 6 4.7569 2.6857 2.3456 7 8 4.8209 1.7387 3.1005 8 7 5.5419 3.7626 2.5472 9 6 5.4761 4.9171 1.6410 10 6 5.2316 6.1817 2.4704 11 6 6.3077 6.2928 3.5529 12 6 6.2245 5.0810 4.4838 13 1 5.2327 5.0346 4.9336 14 7 7.2343 5.2037 5.5381 15 6 6.9625 5.9116 6.6523 16 8 5.8818 6.4465 6.7825 17 6 8.0015 6.0383 7.7365 18 16 7.3406 7.0404 9.0912 19 6 8.7220 7.0257 10.1849 20 1 9.6216 6.4943 9.9114 21 6 8.6545 7.6978 11.3974 22 7 7.5583 8.3459 11.7304 23 14 10.1188 7.6815 12.5571 24 1 11.2945 8.2834 11.8784 25 1 9.7943 8.4666 13.7751 26 1 10.4314 6.2813 12.9401 27 6 6.4805 3.8037 3.6768 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3586 2.1317 0.0895 32 1 2.6214 1.4025 -0.9313 33 1 3.7399 0.5065 1.0922 34 1 2.4772 1.2356 2.1130 35 1 3.0945 3.4846 1.2717 36 1 4.3574 2.7561 0.2506 37 1 4.6581 4.7803 0.9337 38 1 6.4165 5.0123 1.0982 39 1 5.2763 7.0565 1.8218 40 1 4.2489 6.1252 2.9388 41 1 7.2917 6.3242 3.0849 42 1 6.1505 7.2047 4.1290 43 1 8.0985 4.7757 5.4340 44 1 8.2594 5.0475 8.1103 45 1 8.8929 6.5172 7.3313 46 1 7.5112 8.8159 12.5776 47 1 6.3252 2.9323 4.3129 48 1 7.5039 3.8072 3.3018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720429523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:13 Heat of formation + Delta-G solvation = -97.013773 kcal Electronic energy + Delta-G solvation = -26368.179360 eV Core-core repulsion = 22547.930045 eV Total energy + Delta-G solvation = -3820.249315 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.53477 -40.57334 -38.53597 -36.84588 -35.72426 -34.59314 -33.54790 -33.21517 -31.88421 -29.92254 -28.24896 -27.65063 -26.22594 -24.13984 -23.12910 -21.98233 -21.61643 -20.73436 -19.97903 -19.65226 -18.28771 -17.93792 -17.35213 -16.90305 -16.87713 -16.80480 -16.47234 -16.00432 -15.84898 -15.38423 -15.21450 -15.03508 -14.80222 -14.55640 -14.50296 -14.24455 -13.95885 -13.69737 -13.59678 -13.25402 -13.18100 -12.87467 -12.70441 -12.62502 -12.54476 -12.39335 -12.13248 -11.99632 -11.87830 -11.75753 -11.69023 -11.61193 -11.13653 -11.06191 -10.81014 -10.29678 -10.23260 -10.17371 -9.69096 -8.68176 -8.35306 -6.13861 1.23400 1.41484 1.43520 1.44634 1.52897 1.56654 1.61275 1.85654 2.26623 2.39238 2.98823 3.30501 3.47302 3.64285 3.80725 3.85082 3.93423 3.96715 4.04896 4.07632 4.22079 4.28429 4.32255 4.37442 4.45845 4.48933 4.55105 4.65561 4.68177 4.71979 4.73570 4.81357 4.88420 4.94499 5.04061 5.09144 5.17287 5.23078 5.24507 5.36824 5.40729 5.42085 5.54450 5.79919 5.92058 6.18749 6.35305 6.46112 7.05775 7.13555 7.20668 8.73711 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023561 B = 0.001710 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.096919 B =16371.072603 C =16779.771076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.166 4.166 3 C -0.088 4.088 4 C -0.098 4.098 5 C -0.131 4.131 6 C 0.506 3.494 7 O -0.591 6.591 8 N -0.610 5.610 9 C 0.104 3.896 10 C -0.129 4.129 11 C -0.128 4.128 12 C 0.137 3.863 13 H 0.052 0.948 14 N -0.709 5.709 15 C 0.537 3.463 16 O -0.564 6.564 17 C -0.129 4.129 18 S -0.152 6.152 19 C -0.548 4.548 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.261 1.261 25 H -0.279 1.279 26 H -0.263 1.263 27 C 0.113 3.887 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.053 0.947 41 H 0.090 0.910 42 H 0.043 0.957 43 H 0.418 0.582 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.271 0.729 47 H 0.073 0.927 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 -11.398 -31.774 34.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.184 4.184 3 C -0.125 4.125 4 C -0.136 4.136 5 C -0.170 4.170 6 C 0.296 3.704 7 O -0.471 6.471 8 N -0.343 5.343 9 C -0.017 4.017 10 C -0.168 4.168 11 C -0.167 4.167 12 C 0.031 3.969 13 H 0.071 0.929 14 N -0.363 5.363 15 C 0.323 3.677 16 O -0.442 6.442 17 C -0.280 4.280 18 S 0.076 5.924 19 C -0.696 4.696 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.185 1.185 25 H -0.204 1.204 26 H -0.188 1.188 27 C -0.011 4.011 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.134 0.866 36 H 0.147 0.853 37 H 0.137 0.863 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.062 0.938 43 H 0.255 0.745 44 H 0.126 0.874 45 H 0.132 0.868 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.035 -10.913 -31.069 33.478 hybrid contribution 2.037 -0.665 1.365 2.540 sum -3.998 -11.579 -29.704 32.131 Atomic orbital electron populations 1.24017 0.96112 1.02425 1.01303 1.23120 0.96349 0.99150 0.99789 1.20760 0.97949 0.95331 0.98463 1.21231 0.97658 0.96437 0.98313 1.21788 0.97734 1.00729 0.96752 1.21564 0.80643 0.81174 0.86982 1.90701 1.69550 1.37288 1.49561 1.48191 1.39529 1.18192 1.28385 1.22133 1.05388 0.82703 0.91474 1.21906 0.98021 0.99459 0.97391 1.21914 1.01419 0.96503 0.96857 1.21238 0.91821 0.96325 0.87521 0.92936 1.45677 1.19141 1.53851 1.17596 1.20071 0.87429 0.77609 0.82607 1.90691 1.26198 1.47683 1.79629 1.23373 1.01411 1.05434 0.97831 1.85581 1.24540 1.66676 1.15647 1.23181 1.01442 1.39059 1.05934 0.89859 1.26132 1.00138 0.93760 0.99051 1.70177 1.28927 1.32117 1.23552 0.84999 0.77344 0.78876 0.76751 1.18501 1.20374 1.18781 1.21611 0.94596 0.96345 0.88553 0.88240 0.87978 0.87587 0.90506 0.89083 0.92450 0.93720 0.86588 0.85341 0.86342 0.88373 0.87588 0.92768 0.89170 0.93806 0.74500 0.87360 0.86839 0.91983 0.90841 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.26 14.32 67.78 0.97 -1.29 16 2 C -0.17 -1.94 9.52 25.64 0.24 -1.69 16 3 C -0.09 -0.78 5.66 29.84 0.17 -0.61 16 4 C -0.10 -1.31 4.49 30.59 0.14 -1.17 16 5 C -0.13 -1.25 4.05 29.85 0.12 -1.13 16 6 C 0.51 9.54 7.70 87.66 0.67 10.22 16 7 O -0.59 -17.29 15.39 -3.02 -0.05 -17.33 16 8 N -0.61 -9.32 2.97 -818.85 -2.43 -11.75 16 9 C 0.10 0.75 6.34 86.37 0.55 1.30 16 10 C -0.13 -1.53 6.08 30.67 0.19 -1.34 16 11 C -0.13 -2.37 5.46 30.62 0.17 -2.21 16 12 C 0.14 3.16 2.61 45.08 0.12 3.28 16 13 H 0.05 1.65 7.58 -2.39 -0.02 1.63 16 14 N -0.71 -17.98 5.08 -442.10 -2.25 -20.23 16 15 C 0.54 20.03 7.81 87.66 0.69 20.72 16 16 O -0.56 -26.59 15.52 -3.03 -0.05 -26.64 16 17 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 18 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 19 C -0.55 -31.52 9.50 67.95 0.65 -30.88 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.80 5.49 84.86 0.47 1.27 16 22 N -0.91 -56.38 13.22 21.65 0.29 -56.10 16 23 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 27 C 0.11 2.07 5.91 86.38 0.51 2.58 16 28 H 0.10 1.00 8.06 -2.91 -0.02 0.97 16 29 H 0.10 0.99 7.84 -2.91 -0.02 0.96 16 30 H 0.11 1.23 8.06 -2.91 -0.02 1.20 16 31 H 0.08 0.56 7.79 -2.38 -0.02 0.54 16 32 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 34 H 0.04 0.83 8.10 -2.39 -0.02 0.81 16 35 H 0.12 0.67 7.69 -2.39 -0.02 0.65 16 36 H 0.13 0.39 7.94 -2.39 -0.02 0.37 16 37 H 0.12 0.19 5.93 -2.39 -0.01 0.18 16 38 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.42 7.43 8.60 -92.71 -0.80 6.64 16 44 H 0.11 3.92 8.14 -2.40 -0.02 3.91 16 45 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 46 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 47 H 0.07 1.77 7.00 -2.39 -0.02 1.75 16 48 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -86.03 406.82 2.60 -83.43 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.14 Total: 18.16 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 6.08 Total: -5.66 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -4.39 Total: -88.07 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -0.09 Total: -43.97 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -86.03 2.60 -83.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720429523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.588 kcal (2) G-P(sol) polarization free energy of solvation -86.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds