Wall clock time and date at job start Sat Apr 11 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47217 * 2 1 4 4 C 1.53005 * 109.47255 * 240.00012 * 2 1 3 5 5 C 1.50706 * 109.47282 * 119.99968 * 2 1 3 6 6 C 1.32991 * 119.99829 * 0.02562 * 5 2 1 7 7 C 1.47102 * 120.00143 * 180.02562 * 6 5 2 8 8 O 1.21611 * 119.99649 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99953 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99740 * 179.97438 * 9 7 6 11 11 H 1.08994 * 110.88554 * 37.42416 * 10 9 7 12 12 C 1.55158 * 111.00258 * 161.34484 * 10 9 7 13 13 C 1.54340 * 103.02056 * 153.38004 * 12 10 9 14 14 N 1.47021 * 107.26360 * 338.14333 * 13 12 10 15 15 C 1.34778 * 125.64597 * 178.85217 * 14 13 12 16 16 O 1.21278 * 119.99748 * 179.68858 * 15 14 13 17 17 C 1.50697 * 120.00209 * 359.68671 * 15 14 13 18 18 S 1.80999 * 109.47181 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99825 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99855 * 179.72221 * 19 18 17 22 22 N 1.31634 * 119.99756 * 0.27728 * 21 19 18 23 23 Si 1.86803 * 120.00005 * 180.27923 * 21 19 18 24 24 H 1.48496 * 109.47141 * 59.99753 * 23 21 19 25 25 H 1.48497 * 109.46782 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46993 * 300.00030 * 23 21 19 27 27 C 1.47426 * 108.70439 * 358.58153 * 14 13 12 28 28 H 1.08998 * 109.47322 * 300.00034 * 1 2 3 29 29 H 1.09001 * 109.47133 * 60.00085 * 1 2 3 30 30 H 1.09001 * 109.46918 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46877 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.46863 * 300.00086 * 3 2 1 33 33 H 1.09002 * 109.46629 * 60.00117 * 3 2 1 34 34 H 1.09003 * 109.46626 * 299.99841 * 4 2 1 35 35 H 1.09001 * 109.47129 * 59.99901 * 4 2 1 36 36 H 1.08992 * 109.47013 * 180.02562 * 4 2 1 37 37 H 1.07995 * 120.00265 * 179.97438 * 5 2 1 38 38 H 1.08003 * 119.99967 * 359.97438 * 6 5 2 39 39 H 0.97004 * 120.00308 * 359.97438 * 9 7 6 40 40 H 1.09002 * 110.72451 * 271.93722 * 12 10 9 41 41 H 1.09006 * 110.72264 * 35.21303 * 12 10 9 42 42 H 1.08996 * 109.98931 * 218.66496 * 13 12 10 43 43 H 1.09003 * 109.77829 * 97.49290 * 13 12 10 44 44 H 1.08999 * 109.47278 * 59.99800 * 17 15 14 45 45 H 1.09002 * 109.46837 * 300.00183 * 17 15 14 46 46 H 0.97000 * 119.99219 * 179.97438 * 22 21 19 47 47 H 1.09000 * 110.36487 * 143.19330 * 27 14 13 48 48 H 1.08996 * 110.36717 * 265.51803 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2305 6 6 1.1682 -1.2163 2.1057 7 6 1.6585 -1.9092 3.3070 8 8 2.8541 -2.0199 3.4997 9 7 0.7826 -2.4223 4.1936 10 6 1.2710 -3.1129 5.3898 11 1 2.1625 -2.6248 5.7836 12 6 0.1621 -3.2037 6.4712 13 6 0.5598 -4.4615 7.2724 14 7 1.4173 -5.2798 6.4026 15 6 1.9901 -6.4516 6.7421 16 8 2.6769 -7.0460 5.9385 17 6 1.7772 -7.0231 8.1201 18 16 2.6693 -8.5911 8.2674 19 6 2.2583 -9.0222 9.9257 20 1 1.6255 -8.3722 10.5117 21 6 2.7427 -10.2004 10.4768 22 7 3.5136 -10.9930 9.7624 23 14 2.3007 -10.6614 12.2323 24 1 0.8262 -10.7879 12.3545 25 1 2.9396 -11.9561 12.5798 26 1 2.7854 -9.6064 13.1581 27 6 1.5415 -4.6095 5.0954 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7490 -1.2492 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7216 -1.2490 37 1 3.0941 -0.8095 1.4012 38 1 0.1063 -1.1176 1.9347 39 1 -0.1711 -2.3343 4.0398 40 1 0.1711 -2.3191 7.1082 41 1 -0.8164 -3.3381 6.0100 42 1 -0.3317 -5.0241 7.5495 43 1 1.1099 -4.1702 8.1672 44 1 0.7129 -7.1935 8.2824 45 1 2.1507 -6.3215 8.8661 46 1 3.8525 -11.8161 10.1477 47 1 2.5468 -4.7417 4.6953 48 1 0.8003 -4.9989 4.3975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720690144.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:16 Heat of formation + Delta-G solvation = -91.586371 kcal Electronic energy + Delta-G solvation = -26171.388929 eV Core-core repulsion = 22351.374963 eV Total energy + Delta-G solvation = -3820.013965 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.43126 -40.56825 -38.86596 -38.28513 -35.41477 -34.59197 -32.85327 -31.93729 -30.88432 -29.09965 -28.19064 -28.10779 -27.66466 -25.35876 -24.07125 -22.15019 -21.43158 -20.74541 -19.66577 -19.16249 -18.47284 -18.14285 -17.71280 -16.89248 -16.79320 -16.55430 -16.02200 -15.90285 -15.69604 -15.50315 -15.11482 -14.96817 -14.64580 -14.54297 -14.38174 -14.16506 -13.88018 -13.45078 -13.19308 -13.18189 -13.16277 -12.91166 -12.86228 -12.80749 -12.63795 -12.58197 -12.53545 -11.97318 -11.92961 -11.87083 -11.76963 -11.61086 -11.13096 -11.10545 -10.99821 -10.51236 -10.30083 -10.18288 -9.75636 -8.70272 -8.34827 -6.14643 0.37638 1.19878 1.42750 1.44549 1.49688 1.54424 1.87316 2.26566 2.26822 2.31258 2.99261 3.18806 3.38210 3.50971 3.62122 3.85441 3.86582 3.95712 4.08388 4.08851 4.17537 4.21649 4.28283 4.30712 4.41799 4.44444 4.58313 4.72124 4.76316 4.77366 4.78544 4.91486 4.92006 5.00819 5.04449 5.07795 5.14078 5.19634 5.24220 5.31236 5.40696 5.40947 5.41904 5.48497 5.57928 6.18992 6.30520 6.54296 7.04039 7.05807 7.22236 8.74352 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033070 B = 0.001654 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.481935 B =16925.894598 C =17414.944267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.050 4.050 6 C -0.222 4.222 7 C 0.538 3.462 8 O -0.594 6.594 9 N -0.698 5.698 10 C 0.141 3.859 11 H 0.085 0.915 12 C -0.114 4.114 13 C 0.089 3.911 14 N -0.616 5.616 15 C 0.544 3.456 16 O -0.571 6.571 17 C -0.117 4.117 18 S -0.157 6.157 19 C -0.546 4.546 20 H 0.086 0.914 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 1.002 2.998 24 H -0.260 1.260 25 H -0.279 1.279 26 H -0.261 1.261 27 C 0.096 3.904 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.102 0.898 38 H 0.166 0.834 39 H 0.424 0.576 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.271 0.729 47 H 0.041 0.959 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.240 29.654 -16.216 37.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.046 4.046 3 C -0.196 4.196 4 C -0.198 4.198 5 C -0.070 4.070 6 C -0.242 4.242 7 C 0.329 3.671 8 O -0.476 6.476 9 N -0.350 5.350 10 C 0.034 3.966 11 H 0.103 0.897 12 C -0.152 4.152 13 C -0.033 4.033 14 N -0.352 5.352 15 C 0.332 3.668 16 O -0.450 6.450 17 C -0.268 4.268 18 S 0.071 5.929 19 C -0.694 4.694 20 H 0.104 0.896 21 C -0.192 4.192 22 N -0.549 5.549 23 Si 0.823 3.177 24 H -0.184 1.184 25 H -0.205 1.205 26 H -0.186 1.186 27 C -0.029 4.029 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.184 0.816 39 H 0.263 0.737 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.131 0.869 45 H 0.127 0.873 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.299 28.490 -17.237 35.857 hybrid contribution -0.504 -0.289 1.630 1.730 sum -13.803 28.202 -15.608 35.064 Atomic orbital electron populations 1.22020 0.92526 1.02747 1.03180 1.19833 0.97188 0.95556 0.92073 1.21844 1.01120 0.93766 1.02874 1.21862 1.01136 1.00344 0.96492 1.23876 0.99459 0.90355 0.93333 1.22792 1.02589 1.04258 0.94537 1.19309 0.85561 0.77969 0.84259 1.90818 1.18260 1.60912 1.77649 1.45564 1.10812 1.56487 1.22095 1.21859 0.99224 0.89181 0.86299 0.89724 1.22936 0.98386 0.97768 0.96109 1.22444 0.94844 0.91856 0.94147 1.48327 1.50388 1.20721 1.15737 1.19923 0.78342 0.79828 0.88687 1.90694 1.40455 1.60457 1.53358 1.23284 1.05750 1.01434 0.96287 1.85679 1.66503 1.21361 1.19399 1.23169 1.37212 1.10634 0.98394 0.89632 1.26178 0.94128 0.94930 1.03963 1.70195 1.32813 1.12660 1.39199 0.84962 0.79027 0.77664 0.76072 1.18417 1.20460 1.18603 1.22593 1.01222 0.93403 0.85656 0.91265 0.91150 0.91741 0.92877 0.90644 0.92250 0.92729 0.90562 0.92888 0.88036 0.81627 0.73731 0.86194 0.86796 0.88841 0.89948 0.86904 0.87308 0.91988 0.94003 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 7.13 71.98 0.51 -0.26 16 2 C -0.05 -0.41 0.99 -52.92 -0.05 -0.46 16 3 C -0.14 -1.09 8.46 71.98 0.61 -0.48 16 4 C -0.14 -1.28 8.46 71.98 0.61 -0.67 16 5 C -0.05 -0.71 8.33 24.52 0.20 -0.51 16 6 C -0.22 -2.89 9.00 23.43 0.21 -2.68 16 7 C 0.54 10.85 7.76 86.57 0.67 11.52 16 8 O -0.59 -18.59 15.96 -4.07 -0.06 -18.66 16 9 N -0.70 -9.53 5.23 -439.56 -2.30 -11.83 16 10 C 0.14 2.53 3.32 46.38 0.15 2.68 16 11 H 0.08 1.94 7.73 -2.39 -0.02 1.92 16 12 C -0.11 -1.09 6.57 31.79 0.21 -0.88 16 13 C 0.09 1.53 6.49 86.73 0.56 2.09 16 14 N -0.62 -18.05 3.33 -811.78 -2.70 -20.75 16 15 C 0.54 22.31 7.87 87.66 0.69 23.00 16 16 O -0.57 -29.49 16.12 -3.02 -0.05 -29.53 16 17 C -0.12 -4.84 5.35 71.23 0.38 -4.46 16 18 S -0.16 -9.00 20.57 -56.49 -1.16 -10.16 16 19 C -0.55 -31.58 9.50 67.96 0.65 -30.93 16 20 H 0.09 4.53 7.80 -2.91 -0.02 4.51 16 21 C 0.01 0.73 5.49 84.86 0.47 1.20 16 22 N -0.91 -56.92 13.22 21.65 0.29 -56.63 16 23 Si 1.00 43.74 29.55 68.60 2.03 45.77 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 27 C 0.10 2.57 6.60 86.85 0.57 3.15 16 28 H 0.07 0.27 7.50 -2.39 -0.02 0.25 16 29 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.06 0.32 7.50 -2.39 -0.02 0.30 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.10 1.97 7.49 -2.91 -0.02 1.94 16 38 H 0.17 0.95 5.74 -2.91 -0.02 0.94 16 39 H 0.42 2.20 8.50 -92.71 -0.79 1.41 16 40 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.11 0.49 8.00 -2.38 -0.02 0.47 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 45 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 46 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 47 H 0.04 1.48 8.04 -2.39 -0.02 1.46 16 48 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -88.91 409.07 2.64 -86.27 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.16 Total: 13.23 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 6.45 Total: 2.29 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -4.71 Total: -89.21 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -0.11 Total: -48.19 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.16 Total: -10.16 kcal Total: -88.91 2.64 -86.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720690144.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.319 kcal (2) G-P(sol) polarization free energy of solvation -88.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds