Wall clock time and date at job start Sat Apr 11 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47375 * 2 1 4 4 C 1.32994 * 120.00250 * 184.56496 * 3 2 1 5 5 C 1.50699 * 120.00105 * 174.06921 * 4 3 2 6 6 C 1.47102 * 119.99690 * 354.33710 * 4 3 2 7 7 O 1.21610 * 120.00245 * 5.15916 * 6 4 3 8 8 N 1.34778 * 119.99487 * 185.14758 * 6 4 3 9 9 C 1.46505 * 119.99417 * 180.02562 * 8 6 4 10 10 H 1.09000 * 109.47370 * 35.00506 * 9 8 6 11 11 C 1.53007 * 109.46815 * 155.00579 * 9 8 6 12 12 N 1.46500 * 109.46749 * 304.99846 * 11 9 8 13 13 C 1.34778 * 119.99708 * 179.97438 * 12 11 9 14 14 O 1.21286 * 120.00067 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.00241 * 179.97438 * 13 12 11 16 16 S 1.80997 * 109.47433 * 180.02562 * 15 13 12 17 17 C 1.76194 * 100.00054 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00265 * 359.97438 * 17 16 15 19 19 C 1.38792 * 120.00134 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99998 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00305 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47031 * 60.00036 * 21 19 17 23 23 H 1.48501 * 109.47540 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47306 * 299.99910 * 21 19 17 25 25 C 1.52997 * 109.47303 * 275.00237 * 9 8 6 26 26 C 1.53005 * 117.49772 * 128.74964 * 25 9 8 27 27 C 1.53001 * 117.49733 * 60.08929 * 25 9 8 28 28 H 1.08997 * 109.47332 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47054 * 300.00216 * 1 2 3 30 30 H 1.09004 * 109.47077 * 60.00212 * 1 2 3 31 31 H 1.09002 * 109.46866 * 240.00040 * 2 1 3 32 32 H 1.08996 * 109.47192 * 120.00087 * 2 1 3 33 33 H 1.08001 * 119.99789 * 4.55730 * 3 2 1 34 34 H 1.09002 * 109.47027 * 89.99319 * 5 4 3 35 35 H 1.08998 * 109.47019 * 209.99445 * 5 4 3 36 36 H 1.09002 * 109.47358 * 329.99620 * 5 4 3 37 37 H 0.96995 * 120.00518 * 0.02562 * 8 6 4 38 38 H 1.08997 * 109.47268 * 64.99718 * 11 9 8 39 39 H 1.09004 * 109.46774 * 185.00211 * 11 9 8 40 40 H 0.96996 * 120.00354 * 0.02562 * 12 11 9 41 41 H 1.08998 * 109.47102 * 300.00936 * 15 13 12 42 42 H 1.08999 * 109.46678 * 60.00272 * 15 13 12 43 43 H 0.96996 * 120.00217 * 180.02562 * 20 19 17 44 44 H 1.08999 * 115.55316 * 274.42096 * 25 9 8 45 45 H 1.08994 * 117.50168 * 0.02562 * 26 25 9 46 46 H 1.09000 * 117.49792 * 145.02170 * 26 25 9 47 47 H 1.09001 * 117.49668 * 214.97949 * 27 25 9 48 48 H 1.09001 * 117.49948 * 0.02562 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 3.3365 1.6650 -0.0917 5 6 3.8300 3.0825 -0.2264 6 6 4.2968 0.5510 -0.0675 7 8 3.8962 -0.5972 -0.0584 8 7 5.6208 0.8029 -0.0557 9 6 6.5773 -0.3067 -0.0322 10 1 6.1835 -1.1383 -0.6165 11 6 7.9073 0.1538 -0.6323 12 7 7.6759 0.6973 -1.9729 13 6 8.7107 1.1673 -2.6974 14 8 9.8335 1.1398 -2.2396 15 6 8.4728 1.7259 -4.0767 16 16 10.0461 2.2707 -4.7866 17 6 9.4882 2.8610 -6.3501 18 1 8.4395 2.8109 -6.6034 19 6 10.3965 3.3894 -7.2568 20 7 11.6748 3.4500 -6.9484 21 14 9.8051 4.0146 -8.9148 22 1 8.8244 5.1107 -8.7094 23 1 10.9624 4.5247 -9.6931 24 1 9.1584 2.9050 -9.6603 25 6 6.7990 -0.7584 1.4127 26 6 6.6484 -2.2502 1.7174 27 6 5.5809 -1.2604 2.1907 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.3334 2.2407 0.0743 34 1 4.0063 3.5015 0.7643 35 1 4.7597 3.0910 -0.7952 36 1 3.0809 3.6803 -0.7456 37 1 5.9404 1.7186 -0.0627 38 1 8.3445 0.9249 0.0019 39 1 8.5896 -0.6938 -0.6967 40 1 6.7779 0.7196 -2.3389 41 1 8.0362 0.9543 -4.7108 42 1 7.7899 2.5730 -4.0127 43 1 12.3095 3.8196 -7.5819 44 1 7.5573 -0.2055 1.9670 45 1 6.3919 -2.9099 0.8885 46 1 7.3075 -2.6787 2.4725 47 1 5.5382 -1.0381 3.2569 48 1 4.6217 -1.2692 1.6730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720722759.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:34 Heat of formation + Delta-G solvation = -46.177296 kcal Electronic energy + Delta-G solvation = -27000.109063 eV Core-core repulsion = 23182.064183 eV Total energy + Delta-G solvation = -3818.044880 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.66734 -39.18484 -37.86478 -35.66319 -35.30478 -33.85204 -32.44576 -32.39874 -30.28403 -28.30282 -27.26635 -25.51286 -24.13535 -23.16509 -22.49764 -22.11948 -20.80875 -20.21081 -19.62029 -17.88920 -16.93626 -16.63688 -16.38926 -15.94491 -15.80262 -15.22672 -15.01704 -14.81667 -14.65697 -14.26058 -14.17942 -13.98932 -13.77864 -13.33808 -13.15518 -13.09790 -12.89061 -12.80623 -12.60757 -12.26734 -12.02624 -11.93469 -11.70125 -11.60659 -11.51142 -11.39016 -11.06094 -11.04932 -10.79114 -10.58534 -10.48609 -9.84360 -9.81164 -9.49013 -9.40330 -9.14306 -9.08094 -8.97106 -8.26246 -6.51887 -6.22898 -3.93787 1.08120 2.76695 2.93163 3.02751 3.06987 3.22538 3.26597 3.29802 3.63684 3.71411 4.19176 4.30624 4.36044 4.46560 4.60198 4.80292 4.82552 4.85644 4.98089 4.98964 5.03139 5.12180 5.13503 5.14134 5.20337 5.26001 5.37065 5.49046 5.49915 5.57938 5.58422 5.71803 5.73888 5.77194 5.83851 5.85826 5.88426 5.93811 6.01645 6.11197 6.13680 6.21803 6.27161 6.51934 7.24959 7.57853 7.62850 7.97294 8.33658 8.55127 9.22318 10.84442 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012150 B = 0.002401 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.941893 B =11658.245038 C =13380.100788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.094 4.094 3 C -0.063 4.063 4 C -0.198 4.198 5 C -0.117 4.117 6 C 0.555 3.445 7 O -0.535 6.535 8 N -0.720 5.720 9 C 0.167 3.833 10 H 0.097 0.903 11 C 0.117 3.883 12 N -0.740 5.740 13 C 0.532 3.468 14 O -0.516 6.516 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.170 4.170 26 C -0.168 4.168 27 C -0.179 4.179 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.403 0.597 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.107 0.893 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.353 -5.721 18.585 28.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.131 4.131 3 C -0.083 4.083 4 C -0.201 4.201 5 C -0.174 4.174 6 C 0.345 3.655 7 O -0.414 6.414 8 N -0.372 5.372 9 C 0.062 3.938 10 H 0.115 0.885 11 C -0.008 4.008 12 N -0.395 5.395 13 C 0.319 3.681 14 O -0.390 6.390 15 C -0.304 4.304 16 S 0.168 5.832 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.189 4.189 26 C -0.206 4.206 27 C -0.216 4.216 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.142 0.858 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.239 0.761 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.125 0.875 45 H 0.114 0.886 46 H 0.112 0.888 47 H 0.104 0.896 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.526 -6.526 19.287 27.528 hybrid contribution -1.844 1.013 -1.677 2.690 sum -20.370 -5.513 17.611 27.486 Atomic orbital electron populations 1.21912 0.96145 1.01876 1.01518 1.20819 0.94588 0.93425 1.04246 1.23747 0.94556 0.98969 0.91036 1.21450 0.94306 0.95298 1.09035 1.20787 1.02062 0.92178 1.02369 1.18387 0.82296 0.88978 0.75822 1.90720 1.78592 1.22347 1.49777 1.46055 1.05649 1.10164 1.75350 1.20772 0.88303 0.90206 0.94538 0.88549 1.21532 0.95489 0.99943 0.83791 1.45992 1.10947 1.65517 1.17042 1.20320 0.84319 0.76858 0.86651 1.90713 1.22605 1.54272 1.71367 1.23530 1.08072 1.03481 0.95334 1.85391 1.02429 1.78957 1.16447 1.22821 0.96534 1.47475 1.01621 0.90988 1.24990 0.94542 0.95236 0.98796 1.70005 1.01458 1.42771 1.36049 0.86225 0.78263 0.79113 0.81906 1.19938 1.20802 1.19938 1.22558 1.02288 0.97927 0.96165 1.22944 1.02640 0.91420 1.03598 1.23276 0.95467 1.03121 0.99766 0.92505 0.92921 0.92802 0.89250 0.89625 0.85834 0.91175 0.91383 0.91033 0.76126 0.90908 0.89814 0.76741 0.89234 0.89262 0.92112 0.87456 0.88591 0.88815 0.89558 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.85 37.16 0.37 -0.62 16 2 C -0.09 -0.75 4.51 -27.88 -0.13 -0.88 16 3 C -0.06 -0.46 9.25 -36.13 -0.33 -0.79 16 4 C -0.20 -1.55 6.00 -102.85 -0.62 -2.16 16 5 C -0.12 -0.71 9.51 36.01 0.34 -0.36 16 6 C 0.56 5.23 7.04 -12.66 -0.09 5.14 16 7 O -0.53 -6.16 10.12 5.27 0.05 -6.10 16 8 N -0.72 -5.95 4.43 -54.98 -0.24 -6.19 16 9 C 0.17 1.51 2.43 -67.93 -0.17 1.34 16 10 H 0.10 1.00 7.33 -51.93 -0.38 0.62 16 11 C 0.12 1.26 5.22 -4.04 -0.02 1.24 16 12 N -0.74 -9.33 5.39 -60.29 -0.32 -9.65 16 13 C 0.53 9.56 7.85 -10.98 -0.09 9.48 16 14 O -0.52 -11.35 15.86 5.55 0.09 -11.26 16 15 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 16 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 17 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 18 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 21 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 25 C -0.17 -1.46 5.36 -90.62 -0.49 -1.94 16 26 C -0.17 -1.42 10.18 -26.69 -0.27 -1.70 16 27 C -0.18 -1.62 9.73 -26.69 -0.26 -1.88 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.87 7.14 -51.93 -0.37 0.50 16 32 H 0.09 0.78 7.32 -51.93 -0.38 0.40 16 33 H 0.12 0.66 7.99 -52.49 -0.42 0.24 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.41 6.91 -51.93 -0.36 0.05 16 36 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 37 H 0.40 2.92 6.83 -40.82 -0.28 2.64 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.40 4.25 8.14 -40.82 -0.33 3.92 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.11 0.87 8.11 -51.93 -0.42 0.45 16 45 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 46 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.12 1.26 5.02 -51.93 -0.26 1.00 16 LS Contribution 406.99 15.07 6.13 6.13 Total: -1.00 -33.94 406.99 -9.93 -43.88 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.81 Total: 4.82 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -1.33 Total: -8.81 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.17 Total: -41.13 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.14 Total: -17.36 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.94 -9.93 -43.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720722759.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.301 kcal (2) G-P(sol) polarization free energy of solvation -33.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds