Wall clock time and date at job start Sat Apr 11 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47375 * 2 1 4 4 C 1.32994 * 120.00250 * 184.56496 * 3 2 1 5 5 C 1.50699 * 120.00105 * 174.06921 * 4 3 2 6 6 C 1.47102 * 119.99690 * 354.33710 * 4 3 2 7 7 O 1.21610 * 120.00245 * 5.15916 * 6 4 3 8 8 N 1.34778 * 119.99487 * 185.14758 * 6 4 3 9 9 C 1.46505 * 119.99417 * 180.02562 * 8 6 4 10 10 H 1.09000 * 109.47370 * 35.00506 * 9 8 6 11 11 C 1.53007 * 109.46815 * 155.00579 * 9 8 6 12 12 N 1.46500 * 109.46749 * 304.99846 * 11 9 8 13 13 C 1.34778 * 119.99708 * 179.97438 * 12 11 9 14 14 O 1.21286 * 120.00067 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.00241 * 179.97438 * 13 12 11 16 16 S 1.80997 * 109.47433 * 180.02562 * 15 13 12 17 17 C 1.76194 * 100.00054 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00265 * 359.97438 * 17 16 15 19 19 C 1.38792 * 120.00134 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99998 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00305 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47031 * 60.00036 * 21 19 17 23 23 H 1.48501 * 109.47540 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47306 * 299.99910 * 21 19 17 25 25 C 1.52997 * 109.47303 * 275.00237 * 9 8 6 26 26 C 1.53005 * 117.49772 * 128.74964 * 25 9 8 27 27 C 1.53001 * 117.49733 * 60.08929 * 25 9 8 28 28 H 1.08997 * 109.47332 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47054 * 300.00216 * 1 2 3 30 30 H 1.09004 * 109.47077 * 60.00212 * 1 2 3 31 31 H 1.09002 * 109.46866 * 240.00040 * 2 1 3 32 32 H 1.08996 * 109.47192 * 120.00087 * 2 1 3 33 33 H 1.08001 * 119.99789 * 4.55730 * 3 2 1 34 34 H 1.09002 * 109.47027 * 89.99319 * 5 4 3 35 35 H 1.08998 * 109.47019 * 209.99445 * 5 4 3 36 36 H 1.09002 * 109.47358 * 329.99620 * 5 4 3 37 37 H 0.96995 * 120.00518 * 0.02562 * 8 6 4 38 38 H 1.08997 * 109.47268 * 64.99718 * 11 9 8 39 39 H 1.09004 * 109.46774 * 185.00211 * 11 9 8 40 40 H 0.96996 * 120.00354 * 0.02562 * 12 11 9 41 41 H 1.08998 * 109.47102 * 300.00936 * 15 13 12 42 42 H 1.08999 * 109.46678 * 60.00272 * 15 13 12 43 43 H 0.96996 * 120.00217 * 180.02562 * 20 19 17 44 44 H 1.08999 * 115.55316 * 274.42096 * 25 9 8 45 45 H 1.08994 * 117.50168 * 0.02562 * 26 25 9 46 46 H 1.09000 * 117.49792 * 145.02170 * 26 25 9 47 47 H 1.09001 * 117.49668 * 214.97949 * 27 25 9 48 48 H 1.09001 * 117.49948 * 0.02562 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 3.3365 1.6650 -0.0917 5 6 3.8300 3.0825 -0.2264 6 6 4.2968 0.5510 -0.0675 7 8 3.8962 -0.5972 -0.0584 8 7 5.6208 0.8029 -0.0557 9 6 6.5773 -0.3067 -0.0322 10 1 6.1835 -1.1383 -0.6165 11 6 7.9073 0.1538 -0.6323 12 7 7.6759 0.6973 -1.9729 13 6 8.7107 1.1673 -2.6974 14 8 9.8335 1.1398 -2.2396 15 6 8.4728 1.7259 -4.0767 16 16 10.0461 2.2707 -4.7866 17 6 9.4882 2.8610 -6.3501 18 1 8.4395 2.8109 -6.6034 19 6 10.3965 3.3894 -7.2568 20 7 11.6748 3.4500 -6.9484 21 14 9.8051 4.0146 -8.9148 22 1 8.8244 5.1107 -8.7094 23 1 10.9624 4.5247 -9.6931 24 1 9.1584 2.9050 -9.6603 25 6 6.7990 -0.7584 1.4127 26 6 6.6484 -2.2502 1.7174 27 6 5.5809 -1.2604 2.1907 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.3334 2.2407 0.0743 34 1 4.0063 3.5015 0.7643 35 1 4.7597 3.0910 -0.7952 36 1 3.0809 3.6803 -0.7456 37 1 5.9404 1.7186 -0.0627 38 1 8.3445 0.9249 0.0019 39 1 8.5896 -0.6938 -0.6967 40 1 6.7779 0.7196 -2.3389 41 1 8.0362 0.9543 -4.7108 42 1 7.7899 2.5730 -4.0127 43 1 12.3095 3.8196 -7.5819 44 1 7.5573 -0.2055 1.9670 45 1 6.3919 -2.9099 0.8885 46 1 7.3075 -2.6787 2.4725 47 1 5.5382 -1.0381 3.2569 48 1 4.6217 -1.2692 1.6730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720722759.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:33 Heat of formation + Delta-G solvation = -67.835956 kcal Electronic energy + Delta-G solvation = -27001.048253 eV Core-core repulsion = 23182.064183 eV Total energy + Delta-G solvation = -3818.984070 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.46180 -40.49695 -38.66825 -36.35561 -36.21000 -34.81695 -34.57502 -33.07577 -31.54280 -29.47351 -27.76908 -27.64899 -24.97303 -23.94431 -23.19595 -22.74754 -21.86609 -21.21629 -20.40857 -19.77663 -17.90948 -17.68212 -17.48350 -16.87998 -16.86032 -16.73538 -16.42110 -15.96116 -15.69512 -15.32172 -15.03986 -14.86068 -14.61763 -14.59429 -14.31364 -14.10923 -13.78239 -13.63811 -13.34588 -13.29087 -13.16483 -13.04093 -12.86451 -12.66795 -12.61708 -12.53398 -12.29740 -12.09866 -11.93227 -11.75179 -11.29250 -11.25922 -11.12484 -10.94497 -10.54158 -10.27739 -10.19352 -10.11783 -9.78327 -8.65806 -8.34042 -6.11893 0.46117 1.26485 1.44103 1.46602 1.56175 1.59178 2.04910 2.20324 2.28035 2.35419 2.96907 3.00025 3.31750 3.49214 3.76254 3.81768 3.89572 3.98041 4.06038 4.14385 4.22330 4.29377 4.31304 4.42812 4.44040 4.47468 4.51002 4.63408 4.64451 4.80765 4.82088 4.84226 4.84902 5.02048 5.12487 5.20416 5.23472 5.24700 5.31160 5.33838 5.36685 5.42260 5.49045 5.52745 5.69063 6.20128 6.41374 6.56695 7.07318 7.18979 7.26554 8.74771 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012150 B = 0.002401 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.941893 B =11658.245038 C =13380.100788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 C -0.061 4.061 4 C -0.206 4.206 5 C -0.115 4.115 6 C 0.550 3.450 7 O -0.559 6.559 8 N -0.714 5.714 9 C 0.179 3.821 10 H 0.085 0.915 11 C 0.121 3.879 12 N -0.713 5.713 13 C 0.537 3.463 14 O -0.561 6.561 15 C -0.131 4.131 16 S -0.147 6.147 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.261 1.261 23 H -0.279 1.279 24 H -0.264 1.264 25 C -0.168 4.168 26 C -0.167 4.167 27 C -0.181 4.181 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.148 0.852 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.410 0.590 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.412 0.588 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.271 0.729 44 H 0.117 0.883 45 H 0.090 0.910 46 H 0.106 0.894 47 H 0.095 0.905 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.619 -4.956 18.644 29.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.128 4.128 3 C -0.081 4.081 4 C -0.209 4.209 5 C -0.171 4.171 6 C 0.341 3.659 7 O -0.441 6.441 8 N -0.366 5.366 9 C 0.074 3.926 10 H 0.103 0.897 11 C -0.003 4.003 12 N -0.367 5.367 13 C 0.323 3.677 14 O -0.438 6.438 15 C -0.282 4.282 16 S 0.080 5.920 17 C -0.695 4.695 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.188 1.188 25 C -0.188 4.188 26 C -0.205 4.205 27 C -0.218 4.218 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.165 0.835 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.247 0.753 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.248 0.752 41 H 0.124 0.876 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.135 0.865 45 H 0.108 0.892 46 H 0.125 0.875 47 H 0.113 0.887 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.844 -5.765 19.368 29.031 hybrid contribution -1.231 0.683 -1.579 2.116 sum -22.075 -5.083 17.788 28.802 Atomic orbital electron populations 1.21877 0.94717 1.02080 1.02336 1.20707 0.95788 0.93798 1.02494 1.23953 0.94870 0.99040 0.90204 1.21569 0.94174 0.95655 1.09529 1.20806 1.02254 0.90998 1.03068 1.18734 0.82682 0.89141 0.75360 1.90722 1.78981 1.23477 1.50873 1.45981 1.05298 1.10271 1.75041 1.20554 0.87321 0.90019 0.94712 0.89666 1.21617 0.96425 0.99792 0.82496 1.45703 1.10318 1.63483 1.17216 1.19996 0.84527 0.76917 0.86242 1.90707 1.24534 1.56479 1.72123 1.23375 1.03912 1.04696 0.96238 1.85548 1.08885 1.79812 1.17736 1.23165 0.97082 1.47395 1.01844 0.89979 1.26109 0.94551 0.95247 1.03203 1.70171 1.02964 1.43907 1.37658 0.85026 0.77937 0.78862 0.76317 1.18555 1.20431 1.18827 1.22557 1.02338 0.98232 0.95646 1.23003 1.02504 0.91277 1.03693 1.23203 0.94803 1.03678 1.00090 0.92692 0.91837 0.92156 0.91378 0.91198 0.83452 0.90250 0.91414 0.90077 0.75290 0.90428 0.90303 0.75177 0.87628 0.87028 0.91995 0.86493 0.89179 0.87523 0.88657 0.88062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.85 71.98 0.71 -1.02 16 2 C -0.09 -1.42 4.51 29.85 0.13 -1.28 16 3 C -0.06 -0.79 9.25 24.52 0.23 -0.56 16 4 C -0.21 -2.89 6.00 -18.70 -0.11 -3.01 16 5 C -0.11 -1.11 9.51 71.24 0.68 -0.43 16 6 C 0.55 9.85 7.04 86.57 0.61 10.46 16 7 O -0.56 -12.86 10.12 -4.06 -0.04 -12.90 16 8 N -0.71 -10.78 4.43 -446.12 -1.98 -12.76 16 9 C 0.18 3.03 2.43 44.99 0.11 3.14 16 10 H 0.09 1.70 7.33 -2.39 -0.02 1.68 16 11 C 0.12 2.44 5.22 86.38 0.45 2.89 16 12 N -0.71 -16.83 5.39 -463.04 -2.49 -19.33 16 13 C 0.54 18.84 7.85 87.66 0.69 19.53 16 14 O -0.56 -24.83 15.86 -3.05 -0.05 -24.88 16 15 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 16 S -0.15 -8.02 20.57 -56.49 -1.16 -9.18 16 17 C -0.55 -30.87 9.50 67.95 0.65 -30.22 16 18 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 19 C 0.01 0.78 5.49 84.86 0.47 1.24 16 20 N -0.91 -55.51 13.22 21.65 0.29 -55.23 16 21 Si 1.00 43.17 29.55 68.60 2.03 45.20 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 25 C -0.17 -2.67 5.36 -10.79 -0.06 -2.73 16 26 C -0.17 -2.66 10.18 30.62 0.31 -2.34 16 27 C -0.18 -3.10 9.73 30.62 0.30 -2.80 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.07 1.35 7.14 -2.39 -0.02 1.33 16 32 H 0.07 1.30 7.32 -2.39 -0.02 1.28 16 33 H 0.15 1.16 7.99 -2.91 -0.02 1.14 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 0.66 6.91 -2.39 -0.02 0.64 16 36 H 0.08 0.65 8.07 -2.39 -0.02 0.63 16 37 H 0.41 5.13 6.83 -92.71 -0.63 4.50 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.41 7.85 8.14 -92.71 -0.75 7.10 16 41 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 42 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 43 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.12 1.67 8.11 -2.39 -0.02 1.65 16 45 H 0.09 1.54 8.05 -2.39 -0.02 1.52 16 46 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.10 2.16 5.02 -2.39 -0.01 2.14 16 Total: -1.00 -75.32 406.99 1.77 -73.55 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -0.42 Total: 27.26 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 5.60 Total: -11.73 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -4.18 Total: -87.31 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -0.09 Total: -37.78 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.16 Total: -9.18 kcal Total: -75.32 1.77 -73.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720722759.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.711 kcal (2) G-P(sol) polarization free energy of solvation -75.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds