Wall clock time and date at job start Sat Apr 11 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50692 * 109.47236 * 2 1 4 4 C 1.50699 * 120.00478 * 274.99689 * 3 2 1 5 5 C 1.32997 * 120.00336 * 95.00329 * 3 2 1 6 6 C 1.47094 * 120.00480 * 172.81208 * 5 3 2 7 7 O 1.21615 * 119.99988 * 353.25811 * 6 5 3 8 8 N 1.34780 * 120.00223 * 173.25744 * 6 5 3 9 9 C 1.47748 * 125.81775 * 5.04086 * 8 6 5 10 10 C 1.54914 * 104.83789 * 204.25271 * 9 8 6 11 11 C 1.55157 * 101.58112 * 322.90403 * 10 9 8 12 12 C 1.47018 * 125.64844 * 185.04217 * 8 6 5 13 13 H 1.08995 * 109.88722 * 59.32376 * 12 8 6 14 14 C 1.53000 * 109.88176 * 298.30814 * 12 8 6 15 15 N 1.46503 * 109.46749 * 176.65513 * 14 12 8 16 16 C 1.34780 * 119.99559 * 174.93098 * 15 14 12 17 17 O 1.21281 * 120.00200 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99800 * 180.02562 * 16 15 14 19 19 S 1.81000 * 109.47126 * 179.97438 * 18 16 15 20 20 C 1.76205 * 99.99949 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99624 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99541 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99637 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00512 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47390 * 89.99831 * 24 22 20 26 26 H 1.48499 * 109.47082 * 210.00082 * 24 22 20 27 27 H 1.48499 * 109.47064 * 329.99751 * 24 22 20 28 28 H 1.08998 * 109.46906 * 300.00206 * 1 2 3 29 29 H 1.08996 * 109.46865 * 60.00101 * 1 2 3 30 30 H 1.08999 * 109.46942 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47052 * 240.00076 * 2 1 3 32 32 H 1.08999 * 109.47355 * 120.00690 * 2 1 3 33 33 H 1.08999 * 109.47627 * 264.33320 * 4 3 2 34 34 H 1.09003 * 109.46757 * 24.33248 * 4 3 2 35 35 H 1.09003 * 109.47629 * 144.32649 * 4 3 2 36 36 H 1.08003 * 119.99448 * 352.80961 * 5 3 2 37 37 H 1.08994 * 110.43463 * 85.37233 * 9 8 6 38 38 H 1.09002 * 110.38525 * 323.09962 * 9 8 6 39 39 H 1.09005 * 111.00356 * 204.83760 * 10 9 8 40 40 H 1.08999 * 111.04199 * 80.99217 * 10 9 8 41 41 H 1.09008 * 110.72305 * 277.14106 * 11 10 9 42 42 H 1.08995 * 110.87495 * 153.93882 * 11 10 9 43 43 H 1.09001 * 109.46791 * 56.66171 * 14 12 8 44 44 H 1.08994 * 109.47544 * 296.65471 * 14 12 8 45 45 H 0.96993 * 120.00279 * 354.92954 * 15 14 12 46 46 H 1.09001 * 109.46853 * 299.99467 * 18 16 15 47 47 H 1.09001 * 109.47468 * 59.99519 * 18 16 15 48 48 H 0.96999 * 120.00293 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.1764 2.1691 -1.3001 5 6 2.3487 2.0143 1.1474 6 6 2.9863 3.3398 1.1385 7 8 3.3357 3.8395 0.0862 8 7 3.1833 4.0007 2.2965 9 6 2.9075 3.4753 3.6496 10 6 2.6910 4.7334 4.5272 11 6 3.7331 5.7143 3.9279 12 6 3.7094 5.3675 2.4242 13 1 3.0620 6.0652 1.8931 14 6 5.1269 5.4349 1.8523 15 7 5.6120 6.8161 1.9111 16 6 6.8803 7.1006 1.5546 17 8 7.6201 6.2132 1.1856 18 6 7.3794 8.5212 1.6156 19 16 9.1074 8.5771 1.0797 20 6 9.4232 10.3028 1.2445 21 1 8.6430 10.9637 1.5921 22 6 10.6750 10.8124 0.9287 23 7 10.9108 12.1016 1.0513 24 14 12.0247 9.6691 0.3282 25 1 11.9664 9.5689 -1.1522 26 1 13.3472 10.2073 0.7363 27 1 11.8334 8.3221 0.9234 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.2050 2.0914 -1.6521 34 1 1.5046 1.7392 -2.0431 35 1 1.9235 3.2181 -1.1455 36 1 2.1375 1.5229 2.0857 37 1 3.7579 2.8996 4.0149 38 1 2.0084 2.8591 3.6417 39 1 2.9103 4.5221 5.5738 40 1 1.6787 5.1210 4.4127 41 1 4.7215 5.5323 4.3501 42 1 3.4307 6.7489 4.0898 43 1 5.1170 5.0972 0.8160 44 1 5.7857 4.7933 2.4373 45 1 5.0204 7.5257 2.2065 46 1 6.7747 9.1473 0.9594 47 1 7.3047 8.8890 2.6389 48 1 11.7855 12.4578 0.8303 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721178438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:49 Heat of formation + Delta-G solvation = -89.652451 kcal Electronic energy + Delta-G solvation = -26754.638605 eV Core-core repulsion = 22934.708501 eV Total energy + Delta-G solvation = -3819.930104 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.51383 -40.56688 -38.95591 -36.94954 -35.87589 -34.68235 -32.85672 -32.11018 -31.66031 -30.07982 -28.63119 -27.87537 -26.31980 -25.19165 -23.70729 -22.36416 -21.83757 -20.71562 -19.87664 -18.98911 -18.39948 -17.85053 -17.77154 -17.12610 -16.75061 -16.63060 -16.09490 -15.66493 -15.66381 -15.58384 -15.17416 -14.95035 -14.85814 -14.72722 -14.24523 -14.09385 -13.87846 -13.74325 -13.53540 -13.44461 -13.36144 -13.06456 -13.02719 -12.99803 -12.67682 -12.62230 -12.26359 -12.07034 -12.01428 -11.87821 -11.75481 -11.65973 -11.18494 -11.13384 -10.65672 -10.55157 -10.24864 -10.14506 -9.62683 -9.01852 -8.52673 -6.23731 0.35846 0.95417 1.30107 1.43959 1.50442 1.51810 1.82690 2.22398 2.23783 2.36548 2.71507 2.85486 3.38760 3.53496 3.72967 3.77392 3.85585 3.86708 4.08429 4.14686 4.20951 4.24465 4.31562 4.38649 4.42492 4.43705 4.61633 4.62404 4.70269 4.73327 4.77364 4.82576 4.93405 4.97707 5.01719 5.09082 5.10924 5.12257 5.22727 5.33663 5.35596 5.40085 5.53858 5.62716 5.69945 6.10417 6.39131 6.50802 6.92610 7.12076 7.16795 8.59595 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.002036 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.313988 B =13749.703504 C =14747.645066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.023 4.023 4 C -0.124 4.124 5 C -0.238 4.238 6 C 0.547 3.453 7 O -0.576 6.576 8 N -0.614 5.614 9 C 0.093 3.907 10 C -0.122 4.122 11 C -0.128 4.128 12 C 0.132 3.868 13 H 0.080 0.920 14 C 0.120 3.880 15 N -0.705 5.705 16 C 0.534 3.466 17 O -0.566 6.566 18 C -0.108 4.108 19 S -0.180 6.180 20 C -0.528 4.528 21 H 0.065 0.935 22 C 0.047 3.953 23 N -0.915 5.915 24 Si 0.913 3.087 25 H -0.264 1.264 26 H -0.257 1.257 27 H -0.239 1.239 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.155 0.845 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.418 0.582 46 H 0.113 0.887 47 H 0.121 0.879 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.774 -24.565 8.079 37.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.024 4.024 4 C -0.180 4.180 5 C -0.258 4.258 6 C 0.341 3.659 7 O -0.459 6.459 8 N -0.348 5.348 9 C -0.028 4.028 10 C -0.159 4.159 11 C -0.166 4.166 12 C 0.028 3.972 13 H 0.098 0.902 14 C -0.006 4.006 15 N -0.359 5.359 16 C 0.320 3.680 17 O -0.445 6.445 18 C -0.259 4.259 19 S 0.046 5.954 20 C -0.675 4.675 21 H 0.083 0.917 22 C -0.158 4.158 23 N -0.553 5.553 24 Si 0.735 3.265 25 H -0.189 1.189 26 H -0.181 1.181 27 H -0.163 1.163 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.172 0.828 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.123 0.877 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.256 0.744 46 H 0.132 0.868 47 H 0.139 0.861 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -26.297 -25.672 6.865 37.386 hybrid contribution 0.016 1.705 -0.068 1.707 sum -26.281 -23.967 6.797 36.212 Atomic orbital electron populations 1.21718 0.93262 1.02970 1.02292 1.20826 0.97306 0.90516 1.04467 1.22826 0.89165 0.95932 0.94520 1.21069 1.01783 1.00256 0.94937 1.22426 1.08013 0.95020 1.00336 1.18900 0.78775 0.86320 0.81903 1.90796 1.53020 1.70373 1.31663 1.48563 1.63811 1.15221 1.07171 1.22716 1.02488 0.97849 0.79791 1.22790 0.99639 0.93367 1.00154 1.22803 1.01203 1.02138 0.90426 1.21707 0.91705 0.85011 0.98817 0.90209 1.21580 0.95422 0.82663 1.00887 1.45515 1.11895 1.10370 1.68159 1.20064 0.82113 0.89691 0.76143 1.90694 1.56947 1.49325 1.47519 1.23245 0.98826 0.96614 1.07180 1.84793 1.11445 1.10690 1.88428 1.22445 1.01881 0.91670 1.51544 0.91708 1.25527 0.99990 0.96277 0.94043 1.70008 1.24455 1.13119 1.47704 0.85891 0.79530 0.81012 0.80084 1.18906 1.18078 1.16263 0.92231 0.92831 0.90679 0.89688 0.89225 0.92001 0.90733 0.91699 0.82781 0.90618 0.88053 0.87447 0.89451 0.90501 0.87748 0.93727 0.92552 0.74450 0.86832 0.86102 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 71.98 0.71 -0.24 16 2 C -0.09 -0.80 6.08 29.85 0.18 -0.62 16 3 C -0.02 -0.34 5.36 -17.62 -0.09 -0.43 16 4 C -0.12 -2.39 8.47 71.24 0.60 -1.79 16 5 C -0.24 -3.69 9.03 23.43 0.21 -3.48 16 6 C 0.55 12.40 7.46 86.57 0.65 13.05 16 7 O -0.58 -18.03 12.11 -4.08 -0.05 -18.07 16 8 N -0.61 -10.80 3.07 -791.46 -2.43 -13.23 16 9 C 0.09 0.82 6.61 86.79 0.57 1.39 16 10 C -0.12 -0.73 7.09 31.99 0.23 -0.50 16 11 C -0.13 -1.36 6.14 31.78 0.20 -1.17 16 12 C 0.13 2.38 2.96 45.34 0.13 2.52 16 13 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 14 C 0.12 3.21 5.05 86.38 0.44 3.65 16 15 N -0.70 -18.73 5.34 -463.05 -2.47 -21.20 16 16 C 0.53 19.88 7.85 87.66 0.69 20.57 16 17 O -0.57 -26.56 15.86 -3.03 -0.05 -26.60 16 18 C -0.11 -4.20 6.16 71.24 0.44 -3.76 16 19 S -0.18 -9.40 18.55 -56.49 -1.05 -10.44 16 20 C -0.53 -31.19 10.04 67.95 0.68 -30.51 16 21 H 0.06 4.00 8.03 -2.91 -0.02 3.98 16 22 C 0.05 2.81 5.50 84.86 0.47 3.28 16 23 N -0.91 -56.16 13.97 21.65 0.30 -55.86 16 24 Si 0.91 45.94 27.74 68.60 1.90 47.84 16 25 H -0.26 -13.07 7.11 99.48 0.71 -12.36 16 26 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 27 H -0.24 -12.06 6.74 99.48 0.67 -11.39 16 28 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.09 0.54 8.03 -2.39 -0.02 0.52 16 33 H 0.06 1.42 8.03 -2.39 -0.02 1.40 16 34 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 35 H 0.06 1.58 6.17 -2.39 -0.01 1.56 16 36 H 0.15 1.37 6.87 -2.91 -0.02 1.35 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.10 0.46 7.07 -2.39 -0.02 0.45 16 39 H 0.11 0.28 8.14 -2.38 -0.02 0.26 16 40 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.08 0.97 7.80 -2.38 -0.02 0.96 16 42 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.04 1.57 6.59 -2.39 -0.02 1.55 16 44 H 0.06 1.65 8.06 -2.39 -0.02 1.63 16 45 H 0.42 7.80 8.36 -92.71 -0.77 7.02 16 46 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 47 H 0.12 4.17 8.14 -2.40 -0.02 4.15 16 48 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -83.27 402.23 2.39 -80.87 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.14 Total: 14.73 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 6.10 Total: 1.96 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -4.60 Total: -90.29 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -0.10 Total: -44.68 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.90 Total: 47.84 kcal Atomic # 16 Polarization: -9.40 SS G_CDS: -1.05 Total: -10.44 kcal Total: -83.27 2.39 -80.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721178438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.778 kcal (2) G-P(sol) polarization free energy of solvation -83.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds