Wall clock time and date at job start Sat Apr 11 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47090 * 2 1 4 4 C 1.53003 * 109.46877 * 240.00512 * 2 1 3 5 5 C 1.53001 * 109.47369 * 120.00117 * 2 1 3 6 6 H 1.08995 * 115.54712 * 274.33039 * 5 2 1 7 7 C 1.53072 * 117.48858 * 128.59958 * 5 2 1 8 8 C 1.52996 * 117.49413 * 60.00092 * 5 2 1 9 9 H 1.08995 * 117.50534 * 359.97438 * 8 5 2 10 10 C 1.50702 * 117.49546 * 214.97631 * 8 5 2 11 11 O 1.21283 * 120.00262 * 0.09172 * 10 8 5 12 12 N 1.34777 * 119.99928 * 179.81078 * 10 8 5 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 C 1.53940 * 113.74425 * 253.74495 * 13 12 10 15 15 N 1.47813 * 86.03854 * 222.08186 * 14 13 12 16 16 C 1.34780 * 134.45869 * 204.64754 * 15 14 13 17 17 O 1.21282 * 119.99925 * 179.86688 * 16 15 14 18 18 C 1.50699 * 119.99861 * 359.86293 * 16 15 14 19 19 S 1.81002 * 109.46937 * 180.02562 * 18 16 15 20 20 C 1.76205 * 99.99798 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00172 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99785 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99901 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99703 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47281 * 90.00555 * 24 22 20 26 26 H 1.48500 * 109.46846 * 210.00236 * 24 22 20 27 27 H 1.48495 * 109.47494 * 330.00052 * 24 22 20 28 28 C 1.47578 * 91.04670 * 24.54896 * 15 14 13 29 29 H 1.09003 * 109.46875 * 299.99682 * 1 2 3 30 30 H 1.09000 * 109.47309 * 59.99238 * 1 2 3 31 31 H 1.08996 * 109.47244 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47187 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46964 * 300.00450 * 3 2 1 34 34 H 1.09003 * 109.47001 * 60.00396 * 3 2 1 35 35 H 1.08996 * 109.46639 * 299.99704 * 4 2 1 36 36 H 1.09004 * 109.47375 * 59.99773 * 4 2 1 37 37 H 1.09003 * 109.46994 * 179.97438 * 4 2 1 38 38 H 1.09007 * 117.50561 * 145.03832 * 7 5 2 39 39 H 1.08998 * 117.49902 * 0.02562 * 7 5 2 40 40 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 41 41 H 1.09002 * 112.94011 * 25.33968 * 13 12 10 42 42 H 1.08995 * 113.77251 * 336.34502 * 14 13 12 43 43 H 1.09005 * 113.76971 * 107.74967 * 14 13 12 44 44 H 1.09001 * 109.47299 * 300.00017 * 18 16 15 45 45 H 1.09003 * 109.47393 * 60.00149 * 18 16 15 46 46 H 0.96997 * 119.99854 * 179.97438 * 23 22 20 47 47 H 1.09006 * 113.76978 * 221.15109 * 28 15 14 48 48 H 1.09003 * 113.76868 * 89.75677 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 2.1267 -0.1060 2.1447 7 6 3.0743 -1.8322 1.0509 8 6 1.6358 -2.1852 1.4341 9 1 1.0061 -2.6344 0.6661 10 6 1.3885 -2.6664 2.8407 11 8 1.5106 -1.9012 3.7737 12 7 1.0262 -3.9457 3.0613 13 6 0.7800 -4.4120 4.4281 14 6 1.8936 -5.3178 4.9841 15 7 0.8019 -6.1492 5.5335 16 6 0.7002 -7.0145 6.5618 17 8 -0.3553 -7.5679 6.7865 18 6 1.8981 -7.2945 7.4322 19 16 1.4461 -8.4892 8.7145 20 6 2.9862 -8.6287 9.5593 21 1 3.8393 -8.0573 9.2246 22 6 3.1025 -9.4722 10.6555 23 7 2.0625 -10.1682 11.0636 24 14 4.7350 -9.6195 11.5514 25 1 4.7971 -8.6079 12.6367 26 1 4.8585 -10.9795 12.1347 27 1 5.8472 -9.3884 10.5950 28 6 -0.1322 -5.6495 4.5060 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7488 -1.2493 36 1 1.6766 -0.2073 -2.1393 37 1 3.1300 -0.7208 -1.2496 38 1 3.8419 -1.9479 1.8162 39 1 3.3912 -2.0484 0.0306 40 1 0.9286 -4.5578 2.3152 41 1 0.4887 -3.6088 5.1050 42 1 2.4801 -5.8168 4.2127 43 1 2.5094 -4.8399 5.7461 44 1 2.7030 -7.7042 6.8219 45 1 2.2321 -6.3681 7.8997 46 1 2.1440 -10.7580 11.8294 47 1 -1.1310 -5.4358 4.8868 48 1 -0.1421 -6.2461 3.5938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721366095.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:57 Heat of formation + Delta-G solvation = -23.332332 kcal Electronic energy + Delta-G solvation = -26237.255918 eV Core-core repulsion = 22420.201670 eV Total energy + Delta-G solvation = -3817.054248 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.91592 -40.01946 -38.54905 -37.39443 -34.28972 -34.05123 -32.43555 -30.34609 -28.03247 -27.78591 -27.69601 -26.33062 -25.48877 -24.83151 -23.32876 -21.62712 -20.70963 -19.10558 -18.85455 -17.80129 -17.71825 -16.99594 -16.62314 -16.05994 -15.53204 -15.34221 -14.87387 -14.80383 -14.65578 -14.44020 -14.16508 -13.95810 -13.48421 -13.25794 -13.09858 -12.93601 -12.86119 -12.77413 -12.62280 -12.43675 -12.21230 -12.09279 -11.81557 -11.65013 -11.54082 -11.48762 -11.06449 -11.05650 -11.02637 -10.77098 -10.70561 -10.43484 -10.17441 -9.83370 -9.55065 -9.36772 -9.07230 -8.68838 -8.25551 -6.51654 -6.22270 -3.93290 2.12322 2.45041 2.83754 3.08724 3.22381 3.24644 3.29858 3.37582 3.53451 4.05903 4.09539 4.19555 4.23624 4.32469 4.46500 4.51536 4.60254 4.67433 4.73243 4.84386 4.89451 5.04915 5.12975 5.15514 5.16737 5.20149 5.23210 5.32360 5.33540 5.42848 5.45372 5.47114 5.50906 5.53999 5.58201 5.64658 5.70045 5.78665 5.87324 5.89091 5.93354 5.95579 6.12647 6.13431 7.09674 7.59170 7.72842 7.86923 8.34761 8.48217 9.22989 10.85211 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024511 B = 0.001689 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.062058 B =16574.839837 C =17310.954076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C -0.139 4.139 4 C -0.147 4.147 5 C -0.105 4.105 6 H 0.118 0.882 7 C -0.152 4.152 8 C -0.190 4.190 9 H 0.123 0.877 10 C 0.546 3.454 11 O -0.535 6.535 12 N -0.717 5.717 13 C 0.112 3.888 14 C 0.091 3.909 15 N -0.649 5.649 16 C 0.560 3.440 17 O -0.512 6.512 18 C -0.145 4.145 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.103 3.897 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.404 0.596 41 H 0.128 0.872 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.269 0.731 47 H 0.089 0.911 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.350 20.536 -28.131 34.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.041 4.041 3 C -0.197 4.197 4 C -0.204 4.204 5 C -0.124 4.124 6 H 0.136 0.864 7 C -0.189 4.189 8 C -0.211 4.211 9 H 0.141 0.859 10 C 0.332 3.668 11 O -0.411 6.411 12 N -0.368 5.368 13 C 0.006 3.994 14 C -0.034 4.034 15 N -0.389 5.389 16 C 0.350 3.650 17 O -0.386 6.386 18 C -0.296 4.296 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.746 3.254 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.021 4.021 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.129 0.871 40 H 0.239 0.761 41 H 0.146 0.854 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.108 0.892 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.236 19.967 -26.783 33.430 hybrid contribution 2.220 0.009 -0.041 2.220 sum 0.983 19.975 -26.824 33.459 Atomic orbital electron populations 1.21858 0.94090 1.01938 1.01908 1.20118 0.95658 0.95368 0.92945 1.21839 1.01205 0.94679 1.01943 1.22039 1.01264 1.00238 0.96884 1.22479 1.00944 0.89041 0.99903 0.86404 1.23250 0.90351 1.01919 1.03405 1.22267 1.01679 1.01673 0.95496 0.85875 1.19752 0.75597 0.81514 0.89890 1.90729 1.50899 1.54717 1.44725 1.45848 1.70520 1.11674 1.08802 1.23146 0.95951 0.96152 0.84168 1.23695 0.92389 0.89579 0.97721 1.49786 1.14077 1.45513 1.29517 1.20033 0.90062 0.76123 0.78827 1.90720 1.30024 1.48150 1.69659 1.23481 0.98259 1.05933 1.01902 1.85394 1.17692 1.50851 1.29402 1.22860 0.96987 1.31142 1.17391 0.90895 1.24994 0.97715 0.94640 0.96199 1.70017 1.29444 1.25631 1.25164 0.86157 0.82104 0.77665 0.79517 1.20233 1.20722 1.19694 1.23371 0.96046 0.91089 0.91619 0.92357 0.92563 0.92629 0.92402 0.92494 0.92375 0.92521 0.92466 0.92062 0.88258 0.87131 0.76115 0.85445 0.89505 0.89279 0.89281 0.89183 0.92158 0.89233 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 8.31 37.16 0.31 -0.41 16 2 C -0.04 -0.20 0.88 -154.50 -0.14 -0.34 16 3 C -0.14 -0.67 8.46 37.16 0.31 -0.36 16 4 C -0.15 -0.57 7.07 37.16 0.26 -0.30 16 5 C -0.11 -0.67 4.67 -90.58 -0.42 -1.09 16 6 H 0.12 1.00 7.64 -51.93 -0.40 0.60 16 7 C -0.15 -0.82 9.27 -26.69 -0.25 -1.07 16 8 C -0.19 -1.15 5.04 -91.77 -0.46 -1.61 16 9 H 0.12 0.51 7.07 -51.93 -0.37 0.14 16 10 C 0.55 4.86 7.61 -10.98 -0.08 4.78 16 11 O -0.53 -7.03 15.88 5.55 0.09 -6.94 16 12 N -0.72 -5.02 5.37 -55.34 -0.30 -5.32 16 13 C 0.11 1.04 4.40 -70.15 -0.31 0.73 16 14 C 0.09 0.95 8.43 -2.84 -0.02 0.93 16 15 N -0.65 -9.24 3.61 -178.33 -0.64 -9.89 16 16 C 0.56 11.00 8.07 -10.98 -0.09 10.91 16 17 O -0.51 -12.07 16.59 5.56 0.09 -11.98 16 18 C -0.15 -3.05 5.91 36.00 0.21 -2.84 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.54 -15.43 9.50 30.94 0.29 -15.14 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 24 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 C 0.10 1.06 8.59 -2.97 -0.03 1.03 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.27 7.29 -51.93 -0.38 -0.11 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.20 7.07 -51.93 -0.37 -0.17 16 36 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 37 H 0.06 0.22 6.98 -51.93 -0.36 -0.14 16 38 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.11 0.42 5.85 -51.93 -0.30 0.12 16 40 H 0.40 1.68 8.71 -40.82 -0.36 1.32 16 41 H 0.13 1.40 7.51 -51.93 -0.39 1.02 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.09 1.74 8.14 -51.91 -0.42 1.31 16 45 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 46 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 LS Contribution 407.86 15.07 6.15 6.15 Total: -1.00 -36.71 407.86 -9.58 -46.29 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -7.96 Total: -2.65 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -0.50 Total: -2.75 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: -0.21 Total: -40.79 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.18 Total: -18.92 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.71 -9.58 -46.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721366095.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.954 kcal (2) G-P(sol) polarization free energy of solvation -36.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds