Wall clock time and date at job start Sat Apr 11 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47020 * 2 1 4 4 C 1.53000 * 109.47155 * 240.00145 * 2 1 3 5 5 C 1.50695 * 109.47057 * 119.99604 * 2 1 3 6 6 C 1.33001 * 120.00291 * 0.02562 * 5 2 1 7 7 C 1.47095 * 120.00183 * 179.97438 * 6 5 2 8 8 O 1.21614 * 120.00011 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99993 * 179.97438 * 7 6 5 10 10 C 1.47066 * 136.05579 * 0.02562 * 9 7 6 11 11 C 1.53504 * 88.04678 * 207.05024 * 10 9 7 12 12 C 1.47064 * 136.05760 * 179.97438 * 9 7 6 13 13 H 1.09003 * 113.47156 * 267.75953 * 12 9 7 14 14 C 1.52997 * 113.46913 * 38.14095 * 12 9 7 15 15 N 1.46498 * 109.47151 * 285.49748 * 14 12 9 16 16 C 1.34777 * 119.99895 * 179.97438 * 15 14 12 17 17 O 1.21273 * 120.00427 * 359.97438 * 16 15 14 18 18 C 1.50708 * 119.99599 * 179.97438 * 16 15 14 19 19 S 1.81007 * 109.46710 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99653 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99992 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99582 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99445 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00424 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47042 * 89.99507 * 24 22 20 26 26 H 1.48502 * 109.47258 * 209.99837 * 24 22 20 27 27 H 1.48507 * 109.46786 * 329.99686 * 24 22 20 28 28 H 1.08996 * 109.47441 * 300.00037 * 1 2 3 29 29 H 1.09005 * 109.47099 * 60.00326 * 1 2 3 30 30 H 1.08999 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47125 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46918 * 299.99785 * 3 2 1 33 33 H 1.08996 * 109.47043 * 59.99719 * 3 2 1 34 34 H 1.09001 * 109.46662 * 299.99453 * 4 2 1 35 35 H 1.08992 * 109.47453 * 59.99411 * 4 2 1 36 36 H 1.09000 * 109.46615 * 180.02562 * 4 2 1 37 37 H 1.07995 * 120.00222 * 180.02562 * 5 2 1 38 38 H 1.08001 * 119.99440 * 0.02562 * 6 5 2 39 39 H 1.09002 * 113.46793 * 321.85996 * 10 9 7 40 40 H 1.08999 * 113.46805 * 92.24363 * 10 9 7 41 41 H 1.09002 * 114.20460 * 87.54848 * 11 10 9 42 42 H 1.08994 * 114.20514 * 220.37405 * 11 10 9 43 43 H 1.09009 * 109.46882 * 45.48880 * 14 12 9 44 44 H 1.08999 * 109.47646 * 165.49114 * 14 12 9 45 45 H 0.96994 * 120.00220 * 359.97438 * 15 14 12 46 46 H 1.08995 * 109.46901 * 299.99352 * 18 16 15 47 47 H 1.08997 * 109.47456 * 60.00040 * 18 16 15 48 48 H 0.97007 * 119.99748 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7103 1.2305 6 6 1.1681 -1.2162 2.1058 7 6 1.6584 -1.9100 3.3065 8 8 2.8541 -2.0207 3.4992 9 7 0.7826 -2.4221 4.1938 10 6 -0.6812 -2.4930 4.3164 11 6 -0.4976 -2.5661 5.8387 12 6 0.8702 -3.1569 5.4647 13 1 0.8563 -4.2399 5.3420 14 6 2.0088 -2.6786 6.3678 15 7 3.2874 -3.1572 5.8363 16 6 4.4368 -2.8551 6.4720 17 8 4.4127 -2.1867 7.4837 18 6 5.7520 -3.3479 5.9256 19 16 7.0992 -2.7820 6.9939 20 6 8.4764 -3.4806 6.1456 21 1 8.3206 -4.0567 5.2454 22 6 9.7617 -3.2896 6.6336 23 7 10.7906 -3.8111 5.9996 24 14 10.0313 -2.2927 8.1901 25 1 9.9846 -3.1939 9.3695 26 1 11.3573 -1.6269 8.1281 27 1 8.9663 -1.2647 8.3101 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2489 37 1 3.0941 -0.8086 1.4016 38 1 0.1063 -1.1182 1.9344 39 1 -1.1890 -1.5877 3.9835 40 1 -1.1095 -3.3986 3.8869 41 1 -0.4454 -1.5944 6.3298 42 1 -1.1670 -3.2675 6.3364 43 1 2.0138 -1.5890 6.4000 44 1 1.8639 -3.0712 7.3742 45 1 3.3068 -3.6914 5.0270 46 1 5.7470 -4.4374 5.8942 47 1 5.8971 -2.9560 4.9189 48 1 11.6889 -3.6780 6.3408 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721992918.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:34 Heat of formation + Delta-G solvation = -53.550268 kcal Electronic energy + Delta-G solvation = -27024.162596 eV Core-core repulsion = 23205.798000 eV Total energy + Delta-G solvation = -3818.364596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.67714 -40.41348 -39.37402 -38.29956 -35.64760 -34.71361 -32.77273 -31.67417 -30.65282 -28.73708 -28.23030 -28.14972 -27.86669 -25.08822 -24.03138 -22.37472 -21.77821 -20.12271 -19.74063 -19.13907 -18.36808 -17.78871 -17.56943 -17.23677 -17.12361 -16.55044 -16.16102 -15.84948 -15.70712 -15.29389 -15.15079 -14.97637 -14.89517 -14.68057 -14.57348 -13.94885 -13.63183 -13.39320 -13.33602 -13.22805 -13.15212 -13.04942 -12.96716 -12.89902 -12.72907 -12.58436 -12.39213 -11.97136 -11.96838 -11.93178 -11.78399 -11.64289 -11.20449 -11.01488 -10.77277 -10.60764 -10.45213 -10.10624 -9.68854 -9.04746 -8.55238 -6.26984 0.38595 0.93991 1.28391 1.43152 1.51281 1.55625 1.80064 2.21775 2.27208 2.34841 2.67979 2.82317 3.34192 3.50126 3.72234 3.81647 3.87853 3.96864 4.01836 4.04434 4.14412 4.18407 4.22363 4.38446 4.38896 4.41806 4.49327 4.69667 4.72046 4.73462 4.74408 4.86917 4.91055 4.97924 5.00174 5.02556 5.09788 5.20826 5.28456 5.31746 5.37609 5.41401 5.51079 5.54901 5.66959 6.06592 6.41697 6.74283 6.88949 7.13157 7.21257 8.57763 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010736 B = 0.002656 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.482021 B =10540.291614 C =12546.641206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 C -0.140 4.140 4 C -0.139 4.139 5 C -0.056 4.056 6 C -0.214 4.214 7 C 0.555 3.445 8 O -0.582 6.582 9 N -0.649 5.649 10 C 0.103 3.897 11 C -0.127 4.127 12 C 0.114 3.886 13 H 0.120 0.880 14 C 0.118 3.882 15 N -0.698 5.698 16 C 0.536 3.464 17 O -0.568 6.568 18 C -0.108 4.108 19 S -0.168 6.168 20 C -0.532 4.532 21 H 0.057 0.943 22 C 0.045 3.955 23 N -0.917 5.917 24 Si 0.918 3.082 25 H -0.258 1.258 26 H -0.255 1.255 27 H -0.239 1.239 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.096 0.904 38 H 0.160 0.840 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.128 0.872 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.408 0.592 46 H 0.109 0.891 47 H 0.096 0.904 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.738 4.747 -12.111 37.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.046 4.046 3 C -0.197 4.197 4 C -0.196 4.196 5 C -0.076 4.076 6 C -0.234 4.234 7 C 0.348 3.652 8 O -0.463 6.463 9 N -0.384 5.384 10 C -0.019 4.019 11 C -0.165 4.165 12 C 0.010 3.990 13 H 0.138 0.862 14 C -0.007 4.007 15 N -0.350 5.350 16 C 0.321 3.679 17 O -0.448 6.448 18 C -0.259 4.259 19 S 0.059 5.941 20 C -0.680 4.680 21 H 0.075 0.925 22 C -0.160 4.160 23 N -0.555 5.555 24 Si 0.739 3.261 25 H -0.182 1.182 26 H -0.179 1.179 27 H -0.163 1.163 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.177 0.823 39 H 0.115 0.885 40 H 0.131 0.869 41 H 0.113 0.887 42 H 0.147 0.853 43 H 0.063 0.937 44 H 0.104 0.896 45 H 0.245 0.755 46 H 0.127 0.873 47 H 0.114 0.886 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -33.859 5.843 -10.535 35.938 hybrid contribution 1.374 -0.896 -1.171 2.015 sum -32.486 4.947 -11.706 34.883 Atomic orbital electron populations 1.21976 0.92258 1.02757 1.03012 1.19823 0.97343 0.95275 0.92137 1.21853 1.00950 0.94151 1.02789 1.21842 1.00951 1.00458 0.96352 1.23849 0.99223 0.90796 0.93763 1.22711 1.02103 1.04118 0.94461 1.18788 0.84725 0.78723 0.82924 1.90830 1.17347 1.61286 1.76864 1.49901 1.09913 1.55699 1.22901 1.23260 0.78775 1.04618 0.95198 1.23473 0.93222 1.03271 0.96546 1.23325 0.95163 0.98517 0.81969 0.86217 1.21689 0.81910 0.98727 0.98327 1.45656 1.05129 1.54961 1.29221 1.19831 0.85441 0.79276 0.83320 1.90643 1.87506 1.40223 1.26413 1.23204 0.94390 1.05209 1.03061 1.84537 0.99290 1.71939 1.38343 1.22451 0.93079 1.38456 1.14006 0.92491 1.25612 0.94412 0.95697 1.00314 1.70024 0.99632 1.44682 1.41150 0.85819 0.79978 0.80718 0.79545 1.18211 1.17886 1.16346 0.91796 0.90878 0.91523 0.93316 0.90287 0.92664 0.92351 0.90365 0.93282 0.88632 0.82315 0.88483 0.86927 0.88712 0.85346 0.93742 0.89604 0.75538 0.87253 0.88608 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 7.13 71.98 0.51 -0.63 16 2 C -0.05 -0.59 0.99 -52.93 -0.05 -0.64 16 3 C -0.14 -1.82 8.46 71.98 0.61 -1.21 16 4 C -0.14 -1.69 8.46 71.98 0.61 -1.08 16 5 C -0.06 -1.07 8.33 24.52 0.20 -0.87 16 6 C -0.21 -3.74 8.83 23.43 0.21 -3.53 16 7 C 0.55 13.24 7.92 86.57 0.69 13.93 16 8 O -0.58 -19.78 14.11 -4.08 -0.06 -19.84 16 9 N -0.65 -10.48 3.57 -837.36 -2.99 -13.47 16 10 C 0.10 0.53 8.32 83.18 0.69 1.23 16 11 C -0.13 -0.70 8.04 30.97 0.25 -0.46 16 12 C 0.11 1.59 4.07 41.83 0.17 1.76 16 13 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 14 C 0.12 2.86 5.36 86.38 0.46 3.32 16 15 N -0.70 -22.15 4.17 -463.06 -1.93 -24.08 16 16 C 0.54 22.47 7.85 87.66 0.69 23.15 16 17 O -0.57 -27.61 15.86 -3.01 -0.05 -27.66 16 18 C -0.11 -4.91 6.16 71.24 0.44 -4.47 16 19 S -0.17 -9.35 18.55 -56.49 -1.05 -10.39 16 20 C -0.53 -33.42 10.04 67.96 0.68 -32.74 16 21 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 22 C 0.04 2.79 5.50 84.86 0.47 3.25 16 23 N -0.92 -58.35 13.97 21.65 0.30 -58.05 16 24 Si 0.92 47.29 27.74 68.60 1.90 49.19 16 25 H -0.26 -12.78 7.11 99.48 0.71 -12.08 16 26 H -0.25 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.24 -12.44 6.74 99.48 0.67 -11.77 16 28 H 0.06 0.48 7.50 -2.39 -0.02 0.46 16 29 H 0.07 0.43 8.14 -2.38 -0.02 0.42 16 30 H 0.07 0.46 7.50 -2.39 -0.02 0.44 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.10 2.45 7.49 -2.91 -0.02 2.43 16 38 H 0.16 1.65 5.67 -2.91 -0.02 1.64 16 39 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.09 0.69 8.12 -2.39 -0.02 0.67 16 42 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 43 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.41 12.09 7.35 -92.71 -0.68 11.41 16 46 H 0.11 4.58 8.14 -2.40 -0.02 4.56 16 47 H 0.10 4.40 8.14 -2.40 -0.02 4.38 16 48 H 0.28 16.25 8.31 -92.70 -0.77 15.48 16 Total: -1.00 -86.98 406.46 2.98 -84.00 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.22 Total: 19.30 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 6.62 Total: 1.01 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -4.61 Total: -95.60 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -0.11 Total: -47.50 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.90 Total: 49.19 kcal Atomic # 16 Polarization: -9.35 SS G_CDS: -1.05 Total: -10.39 kcal Total: -86.98 2.98 -84.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721992918.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.451 kcal (2) G-P(sol) polarization free energy of solvation -86.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds