Wall clock time and date at job start Sat Apr 11 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47266 * 2 1 4 4 C 1.32995 * 120.00516 * 234.03629 * 3 2 1 5 5 C 1.50704 * 119.99178 * 353.98079 * 4 3 2 6 6 C 1.47098 * 120.00410 * 173.97908 * 4 3 2 7 7 O 1.21610 * 119.99954 * 359.97438 * 6 4 3 8 8 N 1.34772 * 120.00037 * 180.02562 * 6 4 3 9 9 C 1.46492 * 120.00322 * 180.02562 * 8 6 4 10 10 C 1.53008 * 110.64066 * 300.69766 * 9 8 6 11 11 C 1.55159 * 110.72380 * 177.55758 * 9 8 6 12 12 C 1.55396 * 101.36145 * 277.03686 * 11 9 8 13 13 N 1.47426 * 104.87569 * 323.01981 * 12 11 9 14 14 C 1.34773 * 125.64259 * 204.16883 * 13 12 11 15 15 O 1.21286 * 119.99579 * 179.97438 * 14 13 12 16 16 C 1.50695 * 120.00429 * 359.95519 * 14 13 12 17 17 S 1.81000 * 109.47353 * 180.02562 * 16 14 13 18 18 C 1.76200 * 100.00036 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00437 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99728 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00137 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99801 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47128 * 60.00492 * 22 20 18 24 24 H 1.48502 * 109.47197 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47389 * 300.00320 * 22 20 18 26 26 C 1.47016 * 108.70266 * 24.12851 * 13 12 11 27 27 H 1.09007 * 109.46969 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47402 * 299.99906 * 1 2 3 29 29 H 1.09006 * 109.46928 * 60.00476 * 1 2 3 30 30 H 1.08994 * 109.47534 * 239.99560 * 2 1 3 31 31 H 1.09003 * 109.47073 * 120.00043 * 2 1 3 32 32 H 1.08009 * 119.99884 * 54.03595 * 3 2 1 33 33 H 1.09001 * 109.47354 * 85.14756 * 5 4 3 34 34 H 1.09010 * 109.46437 * 205.14339 * 5 4 3 35 35 H 1.08995 * 109.47218 * 325.13854 * 5 4 3 36 36 H 0.97004 * 119.99903 * 359.97438 * 8 6 4 37 37 H 1.08995 * 109.46863 * 59.29558 * 10 9 8 38 38 H 1.08993 * 109.47317 * 179.29951 * 10 9 8 39 39 H 1.09003 * 109.46469 * 299.29710 * 10 9 8 40 40 H 1.08994 * 111.00578 * 35.20579 * 11 9 8 41 41 H 1.09004 * 111.00530 * 159.06855 * 11 9 8 42 42 H 1.08999 * 110.34435 * 204.16493 * 12 11 9 43 43 H 1.08998 * 110.43821 * 81.92182 * 12 11 9 44 44 H 1.09004 * 109.47194 * 299.99787 * 16 14 13 45 45 H 1.09002 * 109.47311 * 60.00243 * 16 14 13 46 46 H 0.96997 * 119.99797 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.88360 * 239.52366 * 26 13 12 48 48 H 1.09002 * 109.88256 * 118.36132 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8917 1.8223 -0.9322 5 6 3.4677 0.8260 -1.9052 6 6 3.2800 3.2388 -1.0135 7 8 2.8149 4.0428 -0.2286 8 7 4.1505 3.6457 -1.9585 9 6 4.5377 5.0563 -2.0391 10 6 3.3104 5.9400 -2.2709 11 6 5.5899 5.2736 -3.1585 12 6 6.9032 4.8864 -2.4235 13 7 6.7282 5.3858 -1.0475 14 6 7.7225 5.6964 -0.1923 15 8 7.4608 6.1009 0.9207 16 6 9.1594 5.5406 -0.6189 17 16 10.2490 6.0334 0.7399 18 6 11.8188 5.7587 -0.0117 19 1 11.8752 5.3906 -1.0254 20 6 12.9830 6.0164 0.6988 21 7 12.9143 6.4655 1.9343 22 14 14.6473 5.7245 -0.0977 23 1 14.7716 6.5732 -1.3099 24 1 15.7241 6.0730 0.8637 25 1 14.7692 4.2947 -0.4799 26 6 5.2896 5.4900 -0.7631 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6945 2.1130 0.7571 33 1 2.7825 0.6989 -2.7434 34 1 4.4274 1.1899 -2.2724 35 1 3.6099 -0.1312 -1.4037 36 1 4.5213 3.0045 -2.5848 37 1 2.6045 5.8037 -1.4517 38 1 3.6181 6.9847 -2.3154 39 1 2.8343 5.6612 -3.2110 40 1 5.4025 4.6127 -4.0046 41 1 5.6126 6.3161 -3.4763 42 1 7.7585 5.3689 -2.8964 43 1 7.0329 3.8042 -2.4207 44 1 9.3507 4.4992 -0.8780 45 1 9.3515 6.1721 -1.4863 46 1 13.7279 6.6452 2.4309 47 1 5.0344 6.5201 -0.5146 48 1 5.0266 4.8308 0.0642 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722187233.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:04 Heat of formation + Delta-G solvation = -61.579672 kcal Electronic energy + Delta-G solvation = -27255.853014 eV Core-core repulsion = 23437.140237 eV Total energy + Delta-G solvation = -3818.712777 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.87809 -39.30341 -37.58715 -36.33961 -34.41354 -32.61451 -32.42069 -31.09333 -29.80675 -29.37526 -27.37014 -26.14957 -25.41269 -24.77051 -23.33191 -21.98970 -20.00702 -19.44188 -18.75888 -17.76029 -17.34825 -16.72773 -16.49403 -15.71513 -15.35850 -15.15376 -14.80224 -14.69090 -14.47855 -14.25708 -14.01354 -13.86711 -13.74815 -13.47146 -13.03862 -12.97345 -12.81908 -12.59695 -12.56301 -12.42434 -12.31525 -12.13719 -11.78277 -11.76371 -11.66798 -11.53208 -11.27559 -11.10671 -11.03669 -11.03031 -10.76917 -9.91401 -9.82131 -9.49465 -9.37507 -9.22196 -9.05296 -8.46998 -8.22014 -6.49236 -6.20498 -3.91323 1.07044 2.81959 2.94966 3.03959 3.10727 3.23475 3.26098 3.29432 3.62760 4.02037 4.20995 4.29543 4.32596 4.49196 4.58527 4.65618 4.75172 4.86450 4.98122 5.02814 5.07189 5.12001 5.14210 5.17251 5.24195 5.32635 5.39259 5.46737 5.48028 5.52894 5.54389 5.56999 5.61713 5.66032 5.71045 5.74301 5.90537 5.95994 6.02232 6.11511 6.13201 6.17504 6.33294 6.44355 7.26283 7.59563 7.69525 8.01244 8.35614 8.59745 9.24198 10.86852 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.002219 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.076122 B =12617.963659 C =13174.442041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.066 4.066 4 C -0.192 4.192 5 C -0.117 4.117 6 C 0.557 3.443 7 O -0.535 6.535 8 N -0.715 5.715 9 C 0.163 3.837 10 C -0.155 4.155 11 C -0.133 4.133 12 C 0.099 3.901 13 N -0.626 5.626 14 C 0.547 3.453 15 O -0.513 6.513 16 C -0.146 4.146 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.109 3.891 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.400 0.600 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.075 0.925 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.708 -12.153 -14.495 30.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.086 4.086 4 C -0.195 4.195 5 C -0.173 4.173 6 C 0.346 3.654 7 O -0.413 6.413 8 N -0.368 5.368 9 C 0.077 3.923 10 C -0.213 4.213 11 C -0.172 4.172 12 C -0.024 4.024 13 N -0.364 5.364 14 C 0.335 3.665 15 O -0.387 6.387 16 C -0.296 4.296 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.014 4.014 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.145 0.855 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.236 0.764 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.236 -10.875 -12.048 29.169 hybrid contribution 1.671 -0.989 -2.134 2.886 sum -22.565 -11.865 -14.183 29.174 Atomic orbital electron populations 1.21689 0.94327 1.02014 1.02397 1.20867 0.96652 0.93644 1.03430 1.23625 0.92322 0.97385 0.95262 1.21404 1.02964 0.93544 1.01603 1.20825 1.00397 0.98019 0.98106 1.18359 0.78341 0.88492 0.80243 1.90784 1.54550 1.54945 1.40981 1.45964 1.46476 1.09283 1.35098 1.21262 0.94593 0.81342 0.95149 1.22084 0.97358 0.98833 1.03022 1.23223 0.93306 1.03915 0.96719 1.22377 0.98257 0.99293 0.82493 1.48504 1.05759 1.67716 1.14416 1.20037 0.86011 0.76464 0.83965 1.90722 1.83860 1.44226 1.19865 1.23502 0.94487 1.04942 1.06678 1.85444 0.97336 1.85850 1.14699 1.22814 0.91488 1.51623 1.02464 0.91005 1.24999 0.99174 0.94597 0.94838 1.70011 1.29175 1.41771 1.09266 0.86222 0.81535 0.78788 0.78929 1.19941 1.20804 1.19957 1.22219 0.79915 1.02286 0.97029 0.92141 0.92267 0.92496 0.90437 0.90088 0.85487 0.91075 0.91784 0.90737 0.76353 0.89964 0.91233 0.92143 0.89198 0.88573 0.89861 0.91505 0.89407 0.89313 0.92120 0.90647 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.89 37.16 0.37 -0.38 16 2 C -0.11 -0.61 6.00 -27.89 -0.17 -0.78 16 3 C -0.07 -0.55 9.08 -36.13 -0.33 -0.88 16 4 C -0.19 -1.65 5.99 -102.85 -0.62 -2.26 16 5 C -0.12 -0.64 8.63 36.01 0.31 -0.32 16 6 C 0.56 6.19 6.96 -12.67 -0.09 6.10 16 7 O -0.53 -7.84 13.18 5.27 0.07 -7.77 16 8 N -0.72 -6.34 5.09 -47.08 -0.24 -6.58 16 9 C 0.16 1.60 0.80 -129.98 -0.10 1.50 16 10 C -0.15 -1.43 8.41 37.16 0.31 -1.12 16 11 C -0.13 -0.99 6.11 -24.32 -0.15 -1.14 16 12 C 0.10 1.03 6.68 -2.26 -0.02 1.01 16 13 N -0.63 -9.60 3.33 -170.22 -0.57 -10.16 16 14 C 0.55 11.14 7.87 -10.99 -0.09 11.06 16 15 O -0.51 -12.70 16.19 5.55 0.09 -12.61 16 16 C -0.15 -3.06 5.16 36.00 0.19 -2.87 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 22 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.11 1.57 5.79 -3.07 -0.02 1.55 16 27 H 0.06 0.24 8.14 -51.92 -0.42 -0.18 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.36 5.81 -51.93 -0.30 0.06 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.13 1.23 7.51 -52.48 -0.39 0.84 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.30 6.47 -51.92 -0.34 -0.03 16 35 H 0.07 0.36 6.71 -51.93 -0.35 0.01 16 36 H 0.40 2.46 6.48 -40.82 -0.26 2.20 16 37 H 0.08 0.95 6.20 -51.93 -0.32 0.63 16 38 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.42 8.06 -51.93 -0.42 0.00 16 41 H 0.10 0.68 8.05 -51.93 -0.42 0.26 16 42 H 0.08 0.83 7.47 -51.93 -0.39 0.44 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 45 H 0.09 1.70 7.85 -51.92 -0.41 1.30 16 46 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.08 1.14 7.80 -51.93 -0.41 0.74 16 48 H 0.08 1.30 6.68 -51.93 -0.35 0.95 16 LS Contribution 399.29 15.07 6.02 6.02 Total: -1.00 -37.19 399.29 -9.03 -46.22 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.70 Total: -0.40 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -0.20 Total: -1.62 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: -0.07 Total: -42.41 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.16 Total: -20.37 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.19 -9.03 -46.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722187233.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.363 kcal (2) G-P(sol) polarization free energy of solvation -37.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds