Wall clock time and date at job start Sat Apr 11 2020 06:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00117 * 2 1 4 4 C 1.52996 * 109.47223 * 54.60191 * 3 2 1 5 5 C 1.50696 * 109.47385 * 174.60561 * 3 2 1 6 6 O 1.21282 * 120.00403 * 145.00047 * 5 3 2 7 7 N 1.34777 * 119.99978 * 324.99971 * 5 3 2 8 8 C 1.46495 * 120.00002 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.47186 * 180.02562 * 8 7 5 10 10 H 1.09011 * 109.46839 * 294.99862 * 9 8 7 11 11 C 1.53000 * 109.47688 * 175.00044 * 9 8 7 12 12 O 1.42904 * 109.46488 * 304.99814 * 11 9 8 13 13 N 1.46500 * 109.47309 * 54.99355 * 9 8 7 14 14 C 1.36936 * 120.00141 * 204.72607 * 13 9 8 15 15 H 1.07994 * 120.00292 * 0.27813 * 14 13 9 16 16 C 1.38816 * 119.99821 * 180.27824 * 14 13 9 17 17 N 1.31620 * 119.99907 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99878 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47113 * 90.00133 * 18 16 14 20 20 H 1.48500 * 109.46924 * 210.00118 * 18 16 14 21 21 H 1.48494 * 109.46852 * 329.99911 * 18 16 14 22 22 C 1.50700 * 109.47338 * 294.60753 * 3 2 1 23 23 C 1.38224 * 120.00986 * 355.14803 * 22 3 2 24 24 C 1.38228 * 120.02658 * 179.72180 * 23 22 3 25 25 C 1.38269 * 120.04772 * 0.56094 * 24 23 22 26 26 C 1.38172 * 120.02593 * 359.71453 * 25 24 23 27 27 C 1.38439 * 120.01801 * 175.42934 * 22 3 2 28 28 F 1.35098 * 120.02261 * 359.97438 * 27 22 3 29 29 H 1.09007 * 109.46976 * 51.45608 * 1 2 3 30 30 H 1.09000 * 109.46856 * 171.45354 * 1 2 3 31 31 H 1.08994 * 109.47174 * 291.45622 * 1 2 3 32 32 H 1.08997 * 109.47359 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.47208 * 300.00386 * 4 3 2 34 34 H 1.09005 * 109.47218 * 60.00197 * 4 3 2 35 35 H 0.97006 * 120.00002 * 359.97438 * 7 5 3 36 36 H 1.08997 * 109.47543 * 60.00391 * 8 7 5 37 37 H 1.09000 * 109.47617 * 299.99599 * 8 7 5 38 38 H 1.09002 * 109.46900 * 64.99345 * 11 9 8 39 39 H 1.08999 * 109.47446 * 184.99825 * 11 9 8 40 40 H 0.96703 * 113.99679 * 179.97438 * 12 11 9 41 41 H 0.96999 * 119.99852 * 25.00613 * 13 9 8 42 42 H 0.97003 * 119.99600 * 179.97438 * 17 16 14 43 43 H 1.08003 * 119.98794 * 0.02562 * 23 22 3 44 44 H 1.07997 * 119.97611 * 180.25554 * 24 23 22 45 45 H 1.07994 * 119.98733 * 179.74276 * 25 24 23 46 46 H 1.08007 * 120.01591 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4544 2.1112 1.1758 5 6 3.5068 1.1891 0.1336 6 8 4.2298 1.9763 -0.4394 7 7 4.0417 0.2101 0.8898 8 6 5.4965 0.0972 1.0201 9 6 5.8371 -1.0882 1.9254 10 1 5.4716 -0.8922 2.9336 11 6 7.3542 -1.2829 1.9619 12 8 7.8484 -1.4239 0.6285 13 7 5.2016 -2.3003 1.4028 14 6 4.9211 -3.3436 2.2441 15 1 5.1642 -3.2712 3.2939 16 6 4.3242 -4.4944 1.7477 17 7 4.0274 -4.5825 0.4684 18 14 3.9408 -5.9174 2.8956 19 1 2.5754 -5.7488 3.4543 20 1 4.0129 -7.1948 2.1417 21 1 4.9296 -5.9400 4.0033 22 6 1.6741 2.0050 -1.2918 23 6 0.9954 1.3287 -2.2880 24 6 0.6819 1.9718 -3.4707 25 6 1.0569 3.2886 -3.6633 26 6 1.7404 3.9650 -2.6711 27 6 2.0501 3.3235 -1.4835 28 9 2.7180 3.9840 -0.5125 29 1 -0.3633 0.6404 -0.8038 30 1 -0.3633 -1.0163 -0.1527 31 1 -0.3633 0.3759 0.9564 32 1 1.8974 3.1071 1.1756 33 1 0.3719 2.1954 1.0792 34 1 1.6975 1.6053 2.1102 35 1 3.4634 -0.4194 1.3484 36 1 5.8945 1.0136 1.4558 37 1 5.9385 -0.0590 0.0360 38 1 7.8203 -0.4173 2.4326 39 1 7.5918 -2.1796 2.5342 40 1 8.8056 -1.5507 0.5752 41 1 4.9832 -2.3654 0.4599 42 1 3.6106 -5.3868 0.1215 43 1 0.7056 0.2988 -2.1403 44 1 0.1479 1.4438 -4.2469 45 1 0.8151 3.7888 -4.5893 46 1 2.0336 4.9935 -2.8218 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725531664.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:25 Heat of formation + Delta-G solvation = -119.497145 kcal Electronic energy + Delta-G solvation = -31187.098786 eV Core-core repulsion = 26799.661343 eV Total energy + Delta-G solvation = -4387.437443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.79320 -40.54294 -38.70641 -37.59763 -36.99455 -34.84520 -33.39441 -32.51518 -31.31817 -30.78090 -29.52963 -28.28303 -27.34853 -25.30866 -23.91065 -23.54008 -22.79271 -21.80756 -20.03873 -19.67144 -17.87586 -17.68995 -17.38259 -16.71490 -16.55415 -16.04751 -15.59292 -15.54868 -15.39098 -14.91152 -14.83299 -14.63880 -14.31264 -14.08185 -13.62964 -13.41736 -13.26574 -13.15042 -12.93530 -12.80661 -12.62013 -12.54659 -12.28517 -12.02199 -11.89143 -11.62739 -11.56640 -11.34649 -10.85525 -10.82085 -10.80365 -10.52725 -10.06521 -9.79359 -9.74709 -9.59980 -9.32471 -8.97855 -8.91441 -8.66927 -8.48481 -6.97453 -5.75211 -3.05481 1.05170 1.15839 2.80100 3.39570 3.41951 3.47075 3.49026 3.67727 3.75220 4.26194 4.40249 4.56833 4.71290 4.77347 4.94134 4.96581 5.01150 5.17730 5.25312 5.31010 5.39920 5.46193 5.49412 5.57947 5.59779 5.62916 5.70660 5.76374 5.93157 5.95137 6.02315 6.04433 6.07264 6.10333 6.21318 6.30653 6.41828 6.55872 6.79505 6.81727 6.95169 7.03363 7.66973 8.02540 8.24566 8.41079 8.61855 9.53487 10.09448 10.46167 11.46145 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.003611 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.629975 B = 7751.786067 C = 8905.276651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.353 6.353 3 C 0.144 3.856 4 C -0.181 4.181 5 C 0.531 3.469 6 O -0.536 6.536 7 N -0.695 5.695 8 C 0.117 3.883 9 C 0.166 3.834 10 H 0.065 0.935 11 C 0.060 3.940 12 O -0.560 6.560 13 N -0.711 5.711 14 C -0.248 4.248 15 H 0.069 0.931 16 C -0.006 4.006 17 N -0.923 5.923 18 Si 0.904 3.096 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.283 1.283 22 C -0.138 4.138 23 C -0.078 4.078 24 C -0.139 4.139 25 C -0.088 4.088 26 C -0.165 4.165 27 C 0.142 3.858 28 F -0.125 7.125 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.415 0.585 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.026 0.974 39 H 0.049 0.951 40 H 0.363 0.637 41 H 0.390 0.610 42 H 0.255 0.745 43 H 0.143 0.857 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.367 15.850 -3.005 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.271 6.271 3 C 0.101 3.899 4 C -0.238 4.238 5 C 0.315 3.685 6 O -0.413 6.413 7 N -0.346 5.346 8 C -0.007 4.007 9 C 0.055 3.945 10 H 0.082 0.918 11 C -0.022 4.022 12 O -0.363 6.363 13 N -0.353 5.353 14 C -0.379 4.379 15 H 0.087 0.913 16 C -0.203 4.203 17 N -0.570 5.570 18 Si 0.735 3.265 19 H -0.217 1.217 20 H -0.219 1.219 21 H -0.209 1.209 22 C -0.140 4.140 23 C -0.096 4.096 24 C -0.157 4.157 25 C -0.106 4.106 26 C -0.183 4.183 27 C 0.122 3.878 28 F -0.103 7.103 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.253 0.747 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.208 0.792 41 H 0.224 0.776 42 H 0.065 0.935 43 H 0.161 0.839 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.381 16.181 -3.357 18.099 hybrid contribution 0.099 -1.064 0.852 1.366 sum -7.282 15.117 -2.505 16.966 Atomic orbital electron populations 1.23123 0.80910 1.03519 1.00801 1.88167 1.20187 1.24109 1.94637 1.20346 0.92213 0.84871 0.92512 1.22504 1.02146 1.01813 0.97383 1.19629 0.87981 0.81615 0.79323 1.90715 1.60713 1.42714 1.47196 1.45892 1.08600 1.30836 1.49253 1.21585 0.79570 0.97767 1.01769 1.20579 0.90124 0.87573 0.96241 0.91752 1.23043 0.97434 0.98178 0.83545 1.86581 1.25900 1.96021 1.27779 1.42362 1.70706 1.12687 1.09560 1.19192 1.33534 0.93903 0.91259 0.91299 1.24728 1.01556 0.98144 0.95865 1.69692 1.47263 1.28289 1.11727 0.86250 0.78054 0.82445 0.79712 1.21736 1.21858 1.20903 1.20030 1.02959 0.93329 0.97688 1.21130 0.96055 1.00451 0.91950 1.21159 1.01908 0.95092 0.97530 1.21012 0.96698 0.94595 0.98292 1.21103 1.02816 1.01341 0.93086 1.17329 0.93746 0.89915 0.86788 1.91480 1.77671 1.80234 1.60959 0.92800 0.88734 0.93491 0.89770 0.90858 0.90381 0.74719 0.92113 0.90564 0.95591 0.93317 0.79227 0.77554 0.93516 0.83928 0.85239 0.85174 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.05 101.05 0.91 1.06 16 2 O -0.35 -5.53 8.96 -35.23 -0.32 -5.84 16 3 C 0.14 2.22 0.79 -92.93 -0.07 2.14 16 4 C -0.18 -2.30 7.81 37.16 0.29 -2.01 16 5 C 0.53 9.88 6.61 -10.99 -0.07 9.81 16 6 O -0.54 -11.21 14.08 5.56 0.08 -11.13 16 7 N -0.69 -12.98 5.30 -60.30 -0.32 -13.30 16 8 C 0.12 2.21 5.12 -4.04 -0.02 2.19 16 9 C 0.17 3.27 2.84 -67.93 -0.19 3.07 16 10 H 0.06 1.21 8.08 -51.92 -0.42 0.79 16 11 C 0.06 1.06 6.85 37.16 0.25 1.31 16 12 O -0.56 -10.32 12.64 -35.23 -0.45 -10.77 16 13 N -0.71 -17.41 4.51 -53.42 -0.24 -17.65 16 14 C -0.25 -6.62 9.93 -15.06 -0.15 -6.77 16 15 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 16 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 17 N -0.92 -27.51 13.06 55.49 0.72 -26.79 16 18 Si 0.90 21.87 29.55 -169.99 -5.02 16.85 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.14 -2.03 4.29 -104.55 -0.45 -2.48 16 23 C -0.08 -1.00 7.64 -39.59 -0.30 -1.30 16 24 C -0.14 -1.47 10.05 -39.57 -0.40 -1.87 16 25 C -0.09 -0.88 10.04 -39.59 -0.40 -1.28 16 26 C -0.16 -1.94 10.03 -39.52 -0.40 -2.33 16 27 C 0.14 2.06 6.18 -39.42 -0.24 1.82 16 28 F -0.13 -1.98 13.15 2.25 0.03 -1.95 16 29 H 0.05 0.54 5.14 -51.92 -0.27 0.27 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.47 6.85 -51.93 -0.36 0.12 16 32 H 0.08 1.10 5.96 -51.93 -0.31 0.79 16 33 H 0.07 0.77 6.68 -51.93 -0.35 0.43 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.42 7.99 7.58 -40.82 -0.31 7.68 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.62 7.39 -51.93 -0.38 1.24 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.36 4.85 9.12 45.56 0.42 5.27 16 41 H 0.39 10.68 7.80 -40.82 -0.32 10.36 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.14 1.76 5.66 -52.48 -0.30 1.47 16 44 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 46 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 LS Contribution 376.56 15.07 5.67 5.67 Total: -1.00 -33.76 376.56 -6.69 -40.45 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -5.52 Total: 21.34 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.33 Total: 3.11 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.16 Total: -57.74 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.68 Total: -27.74 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.03 Total: -1.95 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.76 -6.69 -40.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725531664.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.052 kcal (2) G-P(sol) polarization free energy of solvation -33.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds