Wall clock time and date at job start Sat Apr 11 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00117 * 2 1 4 4 C 1.52996 * 109.47223 * 54.60191 * 3 2 1 5 5 C 1.50696 * 109.47385 * 174.60561 * 3 2 1 6 6 O 1.21282 * 120.00403 * 145.00047 * 5 3 2 7 7 N 1.34777 * 119.99978 * 324.99971 * 5 3 2 8 8 C 1.46495 * 120.00002 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.47186 * 180.02562 * 8 7 5 10 10 H 1.09011 * 109.46839 * 294.99862 * 9 8 7 11 11 C 1.53000 * 109.47688 * 175.00044 * 9 8 7 12 12 O 1.42904 * 109.46488 * 304.99814 * 11 9 8 13 13 N 1.46500 * 109.47309 * 54.99355 * 9 8 7 14 14 C 1.36936 * 120.00141 * 204.72607 * 13 9 8 15 15 H 1.07994 * 120.00292 * 0.27813 * 14 13 9 16 16 C 1.38816 * 119.99821 * 180.27824 * 14 13 9 17 17 N 1.31620 * 119.99907 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99878 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47113 * 90.00133 * 18 16 14 20 20 H 1.48500 * 109.46924 * 210.00118 * 18 16 14 21 21 H 1.48494 * 109.46852 * 329.99911 * 18 16 14 22 22 C 1.50700 * 109.47338 * 294.60753 * 3 2 1 23 23 C 1.38224 * 120.00986 * 355.14803 * 22 3 2 24 24 C 1.38228 * 120.02658 * 179.72180 * 23 22 3 25 25 C 1.38269 * 120.04772 * 0.56094 * 24 23 22 26 26 C 1.38172 * 120.02593 * 359.71453 * 25 24 23 27 27 C 1.38439 * 120.01801 * 175.42934 * 22 3 2 28 28 F 1.35098 * 120.02261 * 359.97438 * 27 22 3 29 29 H 1.09007 * 109.46976 * 51.45608 * 1 2 3 30 30 H 1.09000 * 109.46856 * 171.45354 * 1 2 3 31 31 H 1.08994 * 109.47174 * 291.45622 * 1 2 3 32 32 H 1.08997 * 109.47359 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.47208 * 300.00386 * 4 3 2 34 34 H 1.09005 * 109.47218 * 60.00197 * 4 3 2 35 35 H 0.97006 * 120.00002 * 359.97438 * 7 5 3 36 36 H 1.08997 * 109.47543 * 60.00391 * 8 7 5 37 37 H 1.09000 * 109.47617 * 299.99599 * 8 7 5 38 38 H 1.09002 * 109.46900 * 64.99345 * 11 9 8 39 39 H 1.08999 * 109.47446 * 184.99825 * 11 9 8 40 40 H 0.96703 * 113.99679 * 179.97438 * 12 11 9 41 41 H 0.96999 * 119.99852 * 25.00613 * 13 9 8 42 42 H 0.97003 * 119.99600 * 179.97438 * 17 16 14 43 43 H 1.08003 * 119.98794 * 0.02562 * 23 22 3 44 44 H 1.07997 * 119.97611 * 180.25554 * 24 23 22 45 45 H 1.07994 * 119.98733 * 179.74276 * 25 24 23 46 46 H 1.08007 * 120.01591 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4544 2.1112 1.1758 5 6 3.5068 1.1891 0.1336 6 8 4.2298 1.9763 -0.4394 7 7 4.0417 0.2101 0.8898 8 6 5.4965 0.0972 1.0201 9 6 5.8371 -1.0882 1.9254 10 1 5.4716 -0.8922 2.9336 11 6 7.3542 -1.2829 1.9619 12 8 7.8484 -1.4239 0.6285 13 7 5.2016 -2.3003 1.4028 14 6 4.9211 -3.3436 2.2441 15 1 5.1642 -3.2712 3.2939 16 6 4.3242 -4.4944 1.7477 17 7 4.0274 -4.5825 0.4684 18 14 3.9408 -5.9174 2.8956 19 1 2.5754 -5.7488 3.4543 20 1 4.0129 -7.1948 2.1417 21 1 4.9296 -5.9400 4.0033 22 6 1.6741 2.0050 -1.2918 23 6 0.9954 1.3287 -2.2880 24 6 0.6819 1.9718 -3.4707 25 6 1.0569 3.2886 -3.6633 26 6 1.7404 3.9650 -2.6711 27 6 2.0501 3.3235 -1.4835 28 9 2.7180 3.9840 -0.5125 29 1 -0.3633 0.6404 -0.8038 30 1 -0.3633 -1.0163 -0.1527 31 1 -0.3633 0.3759 0.9564 32 1 1.8974 3.1071 1.1756 33 1 0.3719 2.1954 1.0792 34 1 1.6975 1.6053 2.1102 35 1 3.4634 -0.4194 1.3484 36 1 5.8945 1.0136 1.4558 37 1 5.9385 -0.0590 0.0360 38 1 7.8203 -0.4173 2.4326 39 1 7.5918 -2.1796 2.5342 40 1 8.8056 -1.5507 0.5752 41 1 4.9832 -2.3654 0.4599 42 1 3.6106 -5.3868 0.1215 43 1 0.7056 0.2988 -2.1403 44 1 0.1479 1.4438 -4.2469 45 1 0.8151 3.7888 -4.5893 46 1 2.0336 4.9935 -2.8218 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725531664.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:24 Heat of formation + Delta-G solvation = -145.860331 kcal Electronic energy + Delta-G solvation = -31188.241980 eV Core-core repulsion = 26799.661343 eV Total energy + Delta-G solvation = -4388.580637 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.87233 -41.72939 -39.94784 -38.72092 -38.47706 -36.40369 -35.17962 -33.60646 -33.08988 -31.71551 -30.60297 -29.96249 -28.38965 -26.70181 -25.62753 -24.86980 -23.72251 -22.96330 -21.63513 -20.96644 -19.47789 -18.86995 -18.73159 -18.16551 -17.82151 -17.16126 -16.99007 -16.72291 -16.49695 -16.40356 -16.03056 -15.84308 -15.76106 -15.37538 -15.06977 -14.92155 -14.73843 -14.42659 -14.32121 -13.94057 -13.90348 -13.58066 -13.50319 -13.26142 -13.02641 -12.96753 -12.75490 -12.62591 -12.54440 -12.46971 -12.25301 -11.89082 -11.81346 -11.71593 -11.07345 -10.88545 -10.82002 -10.72290 -10.03944 -9.91177 -9.61086 -8.98015 -7.86437 -5.16214 0.12021 0.23596 1.41728 1.50779 1.51818 1.59712 2.16610 2.58849 2.62156 2.65360 3.28674 3.38823 3.44862 3.60847 3.66828 3.78975 3.88297 3.90139 4.02094 4.12282 4.35676 4.36910 4.42975 4.45000 4.51129 4.51938 4.54775 4.57412 4.61940 4.80990 4.83516 4.88195 4.98593 4.99919 5.10813 5.15937 5.20994 5.33004 5.43183 5.46927 5.56464 5.92961 5.97063 6.31183 6.53765 7.06303 7.14696 7.39243 8.11063 8.37252 9.36330 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.003611 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.629975 B = 7751.786067 C = 8905.276651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.381 6.381 3 C 0.148 3.852 4 C -0.175 4.175 5 C 0.524 3.476 6 O -0.564 6.564 7 N -0.696 5.696 8 C 0.128 3.872 9 C 0.162 3.838 10 H 0.079 0.921 11 C 0.065 3.935 12 O -0.584 6.584 13 N -0.721 5.721 14 C -0.239 4.239 15 H 0.081 0.919 16 C -0.069 4.069 17 N -0.964 5.964 18 Si 0.969 3.031 19 H -0.287 1.287 20 H -0.303 1.303 21 H -0.270 1.270 22 C -0.159 4.159 23 C -0.093 4.093 24 C -0.133 4.133 25 C -0.079 4.079 26 C -0.167 4.167 27 C 0.111 3.889 28 F -0.141 7.141 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.412 0.588 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.038 0.962 40 H 0.385 0.615 41 H 0.372 0.628 42 H 0.248 0.752 43 H 0.142 0.858 44 H 0.160 0.840 45 H 0.169 0.831 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.140 16.839 -2.868 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.300 6.300 3 C 0.105 3.895 4 C -0.232 4.232 5 C 0.309 3.691 6 O -0.444 6.444 7 N -0.346 5.346 8 C 0.004 3.996 9 C 0.053 3.947 10 H 0.096 0.904 11 C -0.016 4.016 12 O -0.391 6.391 13 N -0.361 5.361 14 C -0.371 4.371 15 H 0.099 0.901 16 C -0.261 4.261 17 N -0.614 5.614 18 Si 0.799 3.201 19 H -0.214 1.214 20 H -0.230 1.230 21 H -0.195 1.195 22 C -0.161 4.161 23 C -0.111 4.111 24 C -0.151 4.151 25 C -0.097 4.097 26 C -0.186 4.186 27 C 0.092 3.908 28 F -0.119 7.119 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.249 0.751 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.233 0.767 41 H 0.203 0.797 42 H 0.057 0.943 43 H 0.159 0.841 44 H 0.178 0.822 45 H 0.186 0.814 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.121 17.206 -3.170 19.288 hybrid contribution 0.378 -1.283 0.745 1.531 sum -7.743 15.922 -2.425 17.870 Atomic orbital electron populations 1.23318 0.78909 1.04304 1.02248 1.88113 1.22451 1.24492 1.94935 1.20223 0.89880 0.85230 0.94214 1.22473 1.03402 1.00926 0.96391 1.20295 0.89685 0.80790 0.78376 1.90680 1.61965 1.43635 1.48083 1.45924 1.08424 1.30882 1.49414 1.21428 0.79864 0.98140 1.00174 1.20835 0.91358 0.85895 0.96660 0.90361 1.22875 0.95860 0.99361 0.83464 1.86535 1.28157 1.96154 1.28231 1.42455 1.71430 1.13808 1.08407 1.19601 1.31482 0.94084 0.91901 0.90148 1.25481 1.02651 1.00854 0.97149 1.69866 1.49273 1.28631 1.13674 0.85215 0.78056 0.78880 0.77984 1.21368 1.22972 1.19526 1.20089 1.04367 0.93695 0.97913 1.21277 0.96583 1.00567 0.92646 1.21562 1.00926 0.95469 0.97103 1.21473 0.94898 0.94302 0.98986 1.21451 1.02441 1.02353 0.92341 1.17703 0.95011 0.90361 0.87730 1.91430 1.78272 1.80476 1.61761 0.91305 0.88326 0.92022 0.90371 0.88603 0.90252 0.75091 0.90334 0.93325 0.91615 0.94357 0.76690 0.79672 0.94335 0.84079 0.82241 0.81358 0.82931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.05 113.37 1.03 1.19 16 2 O -0.38 -12.12 8.96 -148.98 -1.33 -13.46 16 3 C 0.15 4.61 0.79 -12.29 -0.01 4.60 16 4 C -0.17 -4.41 7.81 71.98 0.56 -3.85 16 5 C 0.52 20.02 6.61 87.66 0.58 20.60 16 6 O -0.56 -24.31 14.08 -3.04 -0.04 -24.36 16 7 N -0.70 -26.64 5.30 -463.07 -2.45 -29.10 16 8 C 0.13 4.87 5.12 86.38 0.44 5.32 16 9 C 0.16 6.27 2.84 44.99 0.13 6.40 16 10 H 0.08 2.82 8.08 -2.38 -0.02 2.80 16 11 C 0.07 2.22 6.85 71.98 0.49 2.72 16 12 O -0.58 -21.14 12.64 -148.98 -1.88 -23.03 16 13 N -0.72 -35.63 4.51 -322.92 -1.46 -37.09 16 14 C -0.24 -12.72 9.93 84.03 0.83 -11.89 16 15 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 16 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 17 N -0.96 -58.89 13.06 21.65 0.28 -58.61 16 18 Si 0.97 45.23 29.55 68.60 2.03 47.26 16 19 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 22 C -0.16 -4.65 4.29 -19.82 -0.09 -4.74 16 23 C -0.09 -2.31 7.64 22.26 0.17 -2.14 16 24 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 25 C -0.08 -1.34 10.04 22.26 0.22 -1.12 16 26 C -0.17 -3.66 10.03 22.31 0.22 -3.43 16 27 C 0.11 3.21 6.18 22.38 0.14 3.35 16 28 F -0.14 -4.54 13.15 44.97 0.59 -3.95 16 29 H 0.07 1.32 5.14 -2.38 -0.01 1.31 16 30 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.06 1.17 6.85 -2.39 -0.02 1.16 16 32 H 0.08 2.07 5.96 -2.39 -0.01 2.05 16 33 H 0.10 1.93 6.68 -2.39 -0.02 1.91 16 34 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.41 16.30 7.58 -92.70 -0.70 15.59 16 36 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.05 2.12 7.39 -2.39 -0.02 2.11 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.39 9.82 9.12 -74.06 -0.68 9.14 16 41 H 0.37 20.98 7.80 -92.71 -0.72 20.25 16 42 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.14 3.45 5.66 -2.91 -0.02 3.43 16 44 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 45 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 46 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -74.81 376.56 0.09 -74.72 By element: Atomic # 1 Polarization: 57.29 SS G_CDS: -1.05 Total: 56.23 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 5.42 Total: 11.38 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -3.63 Total: -124.80 kcal Atomic # 8 Polarization: -57.58 SS G_CDS: -3.26 Total: -60.84 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.59 Total: -3.95 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -74.81 0.09 -74.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725531664.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.143 kcal (2) G-P(sol) polarization free energy of solvation -74.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds