Wall clock time and date at job start Sat Apr 11 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 114.00179 * 2 1 4 4 C 1.52998 * 109.47262 * 173.24975 * 3 2 1 5 5 C 1.50697 * 109.46410 * 53.25016 * 3 2 1 6 6 O 1.21286 * 119.99691 * 214.99620 * 5 3 2 7 7 N 1.34775 * 120.00282 * 35.27998 * 5 3 2 8 8 C 1.46499 * 119.99928 * 179.71913 * 7 5 3 9 9 C 1.52995 * 109.47253 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.47085 * 65.00173 * 9 8 7 11 11 C 1.53003 * 109.47489 * 185.00072 * 9 8 7 12 12 O 1.42901 * 109.46760 * 55.00285 * 11 9 8 13 13 N 1.46507 * 109.47061 * 305.00292 * 9 8 7 14 14 C 1.36939 * 119.99991 * 154.99828 * 13 9 8 15 15 H 1.08005 * 119.99866 * 0.02562 * 14 13 9 16 16 C 1.38806 * 120.00066 * 180.02562 * 14 13 9 17 17 N 1.31621 * 120.00272 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 120.00054 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.46906 * 89.99704 * 18 16 14 20 20 H 1.48500 * 109.46891 * 210.00393 * 18 16 14 21 21 H 1.48501 * 109.46826 * 330.00002 * 18 16 14 22 22 C 1.50695 * 109.47065 * 293.25334 * 3 2 1 23 23 C 1.38222 * 120.01195 * 357.47579 * 22 3 2 24 24 C 1.38226 * 120.02354 * 179.97438 * 23 22 3 25 25 C 1.38270 * 120.05283 * 0.02562 * 24 23 22 26 26 C 1.38179 * 120.02311 * 0.02562 * 25 24 23 27 27 C 1.38432 * 120.01334 * 177.20258 * 22 3 2 28 28 F 1.35101 * 120.02671 * 359.97438 * 27 22 3 29 29 H 1.09000 * 109.47482 * 52.12864 * 1 2 3 30 30 H 1.09004 * 109.47194 * 172.13313 * 1 2 3 31 31 H 1.08999 * 109.47235 * 292.12902 * 1 2 3 32 32 H 1.09000 * 109.46819 * 300.00260 * 4 3 2 33 33 H 1.09001 * 109.46742 * 59.99809 * 4 3 2 34 34 H 1.08997 * 109.47170 * 180.02562 * 4 3 2 35 35 H 0.96997 * 119.99940 * 359.71837 * 7 5 3 36 36 H 1.09001 * 109.47334 * 300.00157 * 8 7 5 37 37 H 1.09002 * 109.47414 * 60.00064 * 8 7 5 38 38 H 1.08995 * 109.47311 * 174.99663 * 11 9 8 39 39 H 1.09001 * 109.47274 * 295.00190 * 11 9 8 40 40 H 0.96702 * 113.99759 * 180.02562 * 12 11 9 41 41 H 0.96994 * 119.99645 * 334.99538 * 13 9 8 42 42 H 0.96994 * 120.00038 * 179.97438 * 17 16 14 43 43 H 1.07999 * 119.99279 * 0.02562 * 23 22 3 44 44 H 1.08007 * 119.97610 * 180.02562 * 24 23 22 45 45 H 1.07998 * 119.98869 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.00956 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5263 1.1887 0.1695 5 6 1.4379 2.1100 1.1385 6 8 1.2533 3.3015 1.0064 7 7 1.1364 1.5067 2.3053 8 6 0.5857 2.2900 3.4141 9 6 0.3339 1.3718 4.6116 10 1 1.2841 0.9828 4.9774 11 6 -0.3558 2.1629 5.7249 12 8 -1.5437 2.7696 5.2124 13 7 -0.5241 0.2576 4.2007 14 6 -0.4843 -0.9266 4.8872 15 1 0.1794 -1.0391 5.7319 16 6 -1.2968 -1.9824 4.4976 17 7 -1.2589 -3.1204 5.1578 18 14 -2.4452 -1.7876 3.0372 19 1 -1.7408 -2.1969 1.7956 20 1 -3.6431 -2.6434 3.2319 21 1 -2.8646 -0.3676 2.9232 22 6 1.7021 1.9925 -1.3054 23 6 1.0027 1.3222 -2.2912 24 6 0.7195 1.9523 -3.4885 25 6 1.1359 3.2535 -3.7016 26 6 1.8361 3.9252 -2.7178 27 6 2.1146 3.2972 -1.5154 28 9 2.7930 3.9555 -0.5502 29 1 -0.3634 0.6309 -0.8112 30 1 -0.3634 -1.0180 -0.1407 31 1 -0.3633 0.3871 0.9519 32 1 3.7491 0.6918 1.1138 33 1 3.9402 0.6067 -0.6539 34 1 3.9696 2.1845 0.1700 35 1 1.2840 0.5539 2.4110 36 1 1.2943 3.0690 3.6958 37 1 -0.3535 2.7481 3.1041 38 1 -0.6151 1.4898 6.5420 39 1 0.3183 2.9369 6.0918 40 1 -2.0332 3.2888 5.8651 41 1 -1.1204 0.3588 3.4424 42 1 -1.8270 -3.8581 4.8857 43 1 0.6766 0.3059 -2.1258 44 1 0.1726 1.4279 -4.2581 45 1 0.9144 3.7447 -4.6375 46 1 2.1616 4.9414 -2.8847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725531666.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:29 Heat of formation + Delta-G solvation = -114.886872 kcal Electronic energy + Delta-G solvation = -31679.582316 eV Core-core repulsion = 27292.344790 eV Total energy + Delta-G solvation = -4387.237527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.75394 -40.80284 -38.81774 -37.54548 -37.13905 -35.08065 -33.58939 -32.84639 -31.54506 -30.89438 -29.78731 -28.92179 -26.43068 -25.80689 -24.26378 -23.32486 -22.88089 -21.99099 -20.23020 -19.82519 -18.26907 -17.69647 -17.58867 -16.91403 -16.70341 -16.12912 -15.70113 -15.60134 -15.41837 -14.97093 -14.94609 -14.67978 -14.52233 -14.19353 -13.73354 -13.55984 -13.30024 -13.16881 -12.94549 -12.86904 -12.59960 -12.55267 -12.43230 -12.20674 -12.15968 -11.79719 -11.62506 -11.53940 -11.13442 -11.00062 -10.89838 -10.72859 -10.28837 -10.15795 -9.67444 -9.52638 -9.38075 -9.06234 -9.01932 -8.77947 -8.65527 -7.37907 -5.85222 -3.21685 0.97141 1.08672 2.67713 3.15866 3.29642 3.38331 3.39887 3.50212 3.63090 4.22269 4.32956 4.52419 4.62617 4.73487 4.77280 4.81857 4.93557 5.09988 5.16965 5.23325 5.31794 5.34557 5.44399 5.46985 5.51356 5.55324 5.67712 5.78209 5.84331 5.88631 5.89713 5.91694 5.95655 6.02498 6.13381 6.17939 6.22317 6.35468 6.57646 6.70992 6.75628 6.89417 7.76727 7.87706 8.08086 8.33413 8.37833 9.10891 9.83484 10.03345 11.32571 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013405 B = 0.004081 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.260125 B = 6860.075886 C = 7910.546992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.356 6.356 3 C 0.146 3.854 4 C -0.137 4.137 5 C 0.490 3.510 6 O -0.529 6.529 7 N -0.708 5.708 8 C 0.114 3.886 9 C 0.171 3.829 10 H 0.075 0.925 11 C 0.059 3.941 12 O -0.565 6.565 13 N -0.737 5.737 14 C -0.250 4.250 15 H 0.091 0.909 16 C 0.012 3.988 17 N -0.930 5.930 18 Si 0.875 3.125 19 H -0.281 1.281 20 H -0.291 1.291 21 H -0.275 1.275 22 C -0.144 4.144 23 C -0.080 4.080 24 C -0.141 4.141 25 C -0.086 4.086 26 C -0.166 4.166 27 C 0.146 3.854 28 F -0.120 7.120 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.414 0.586 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.031 0.969 40 H 0.366 0.634 41 H 0.364 0.636 42 H 0.260 0.740 43 H 0.142 0.858 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 11.904 -14.351 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.275 6.275 3 C 0.103 3.897 4 C -0.194 4.194 5 C 0.274 3.726 6 O -0.405 6.405 7 N -0.361 5.361 8 C -0.010 4.010 9 C 0.061 3.939 10 H 0.093 0.907 11 C -0.022 4.022 12 O -0.369 6.369 13 N -0.381 5.381 14 C -0.379 4.379 15 H 0.109 0.891 16 C -0.184 4.184 17 N -0.577 5.577 18 Si 0.706 3.294 19 H -0.207 1.207 20 H -0.218 1.218 21 H -0.201 1.201 22 C -0.145 4.145 23 C -0.098 4.098 24 C -0.159 4.159 25 C -0.105 4.105 26 C -0.185 4.185 27 C 0.126 3.874 28 F -0.098 7.098 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.251 0.749 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.211 0.789 41 H 0.198 0.802 42 H 0.070 0.930 43 H 0.160 0.840 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.173 12.092 -14.760 20.385 hybrid contribution -1.265 0.142 -0.059 1.274 sum 5.908 12.234 -14.819 20.104 Atomic orbital electron populations 1.23364 0.80316 1.03950 1.02022 1.88044 1.20473 1.24394 1.94554 1.20463 0.96312 0.83289 0.89682 1.21814 0.89520 1.03874 1.04242 1.20882 0.78954 0.88470 0.84325 1.90726 1.52705 1.14818 1.82277 1.46088 1.63670 1.13767 1.12584 1.21639 0.98896 0.93915 0.86537 1.20572 0.94213 0.87692 0.91428 0.90677 1.22993 0.86155 0.94924 0.98102 1.86522 1.39404 1.70190 1.40754 1.42720 1.47591 1.10854 1.36886 1.19046 1.20244 0.87707 1.10931 0.89110 1.24615 0.99287 0.95793 0.98711 1.69690 1.42682 1.03477 1.41842 0.86684 0.81488 0.77450 0.83827 1.20719 1.21777 1.20050 1.20031 1.03223 0.94145 0.97135 1.21125 0.95781 1.00654 0.92227 1.21148 1.01846 0.95394 0.97497 1.21026 0.96303 0.94556 0.98572 1.21131 1.02992 1.01312 0.93051 1.17335 0.94222 0.89767 0.86030 1.91539 1.76441 1.80239 1.61622 0.92632 0.88367 0.92494 0.90345 0.90317 0.89964 0.74859 0.91560 0.90645 0.92721 0.95102 0.78876 0.80236 0.92974 0.84004 0.85271 0.85155 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.13 101.05 0.92 0.91 16 2 O -0.36 -5.31 9.08 -35.23 -0.32 -5.63 16 3 C 0.15 2.13 0.80 -92.93 -0.07 2.05 16 4 C -0.14 -1.71 8.64 37.16 0.32 -1.39 16 5 C 0.49 8.27 5.48 -10.99 -0.06 8.21 16 6 O -0.53 -10.16 13.25 5.55 0.07 -10.09 16 7 N -0.71 -11.88 4.12 -60.30 -0.25 -12.13 16 8 C 0.11 1.95 5.12 -4.04 -0.02 1.93 16 9 C 0.17 3.11 2.84 -67.93 -0.19 2.92 16 10 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 11 C 0.06 0.98 6.86 37.16 0.25 1.24 16 12 O -0.57 -9.48 12.64 -35.23 -0.45 -9.92 16 13 N -0.74 -16.40 4.31 -53.42 -0.23 -16.63 16 14 C -0.25 -6.60 10.41 -15.06 -0.16 -6.75 16 15 H 0.09 2.56 8.06 -52.48 -0.42 2.13 16 16 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 17 N -0.93 -28.14 13.97 55.49 0.78 -27.37 16 18 Si 0.88 21.37 27.74 -169.99 -4.71 16.66 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.27 -6.57 6.52 56.52 0.37 -6.20 16 22 C -0.14 -1.99 4.42 -104.56 -0.46 -2.46 16 23 C -0.08 -0.96 7.70 -39.59 -0.31 -1.26 16 24 C -0.14 -1.39 10.04 -39.57 -0.40 -1.78 16 25 C -0.09 -0.82 10.04 -39.59 -0.40 -1.22 16 26 C -0.17 -1.87 10.03 -39.51 -0.40 -2.27 16 27 C 0.15 2.05 6.19 -39.42 -0.24 1.80 16 28 F -0.12 -1.88 12.89 2.25 0.03 -1.85 16 29 H 0.06 0.74 5.13 -51.93 -0.27 0.48 16 30 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.06 0.97 6.25 -51.93 -0.32 0.64 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.01 6.53 -51.93 -0.34 0.68 16 35 H 0.41 7.13 7.28 -40.82 -0.30 6.83 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.43 7.39 -51.93 -0.38 1.04 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.37 4.37 9.12 45.56 0.42 4.78 16 41 H 0.36 8.38 5.66 -40.82 -0.23 8.15 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.14 1.59 5.52 -52.49 -0.29 1.30 16 44 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 45 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 372.29 15.07 5.61 5.61 Total: -1.00 -33.09 372.29 -6.31 -39.40 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -5.53 Total: 19.76 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -1.31 Total: 2.19 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.30 Total: -56.12 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.69 Total: -25.64 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.03 Total: -1.85 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.66 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.09 -6.31 -39.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725531666.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.491 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds