Wall clock time and date at job start Sat Apr 11 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 114.00179 * 2 1 4 4 C 1.52998 * 109.47262 * 173.24975 * 3 2 1 5 5 C 1.50697 * 109.46410 * 53.25016 * 3 2 1 6 6 O 1.21286 * 119.99691 * 214.99620 * 5 3 2 7 7 N 1.34775 * 120.00282 * 35.27998 * 5 3 2 8 8 C 1.46499 * 119.99928 * 179.71913 * 7 5 3 9 9 C 1.52995 * 109.47253 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.47085 * 65.00173 * 9 8 7 11 11 C 1.53003 * 109.47489 * 185.00072 * 9 8 7 12 12 O 1.42901 * 109.46760 * 55.00285 * 11 9 8 13 13 N 1.46507 * 109.47061 * 305.00292 * 9 8 7 14 14 C 1.36939 * 119.99991 * 154.99828 * 13 9 8 15 15 H 1.08005 * 119.99866 * 0.02562 * 14 13 9 16 16 C 1.38806 * 120.00066 * 180.02562 * 14 13 9 17 17 N 1.31621 * 120.00272 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 120.00054 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.46906 * 89.99704 * 18 16 14 20 20 H 1.48500 * 109.46891 * 210.00393 * 18 16 14 21 21 H 1.48501 * 109.46826 * 330.00002 * 18 16 14 22 22 C 1.50695 * 109.47065 * 293.25334 * 3 2 1 23 23 C 1.38222 * 120.01195 * 357.47579 * 22 3 2 24 24 C 1.38226 * 120.02354 * 179.97438 * 23 22 3 25 25 C 1.38270 * 120.05283 * 0.02562 * 24 23 22 26 26 C 1.38179 * 120.02311 * 0.02562 * 25 24 23 27 27 C 1.38432 * 120.01334 * 177.20258 * 22 3 2 28 28 F 1.35101 * 120.02671 * 359.97438 * 27 22 3 29 29 H 1.09000 * 109.47482 * 52.12864 * 1 2 3 30 30 H 1.09004 * 109.47194 * 172.13313 * 1 2 3 31 31 H 1.08999 * 109.47235 * 292.12902 * 1 2 3 32 32 H 1.09000 * 109.46819 * 300.00260 * 4 3 2 33 33 H 1.09001 * 109.46742 * 59.99809 * 4 3 2 34 34 H 1.08997 * 109.47170 * 180.02562 * 4 3 2 35 35 H 0.96997 * 119.99940 * 359.71837 * 7 5 3 36 36 H 1.09001 * 109.47334 * 300.00157 * 8 7 5 37 37 H 1.09002 * 109.47414 * 60.00064 * 8 7 5 38 38 H 1.08995 * 109.47311 * 174.99663 * 11 9 8 39 39 H 1.09001 * 109.47274 * 295.00190 * 11 9 8 40 40 H 0.96702 * 113.99759 * 180.02562 * 12 11 9 41 41 H 0.96994 * 119.99645 * 334.99538 * 13 9 8 42 42 H 0.96994 * 120.00038 * 179.97438 * 17 16 14 43 43 H 1.07999 * 119.99279 * 0.02562 * 23 22 3 44 44 H 1.08007 * 119.97610 * 180.02562 * 24 23 22 45 45 H 1.07998 * 119.98869 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.00956 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5263 1.1887 0.1695 5 6 1.4379 2.1100 1.1385 6 8 1.2533 3.3015 1.0064 7 7 1.1364 1.5067 2.3053 8 6 0.5857 2.2900 3.4141 9 6 0.3339 1.3718 4.6116 10 1 1.2841 0.9828 4.9774 11 6 -0.3558 2.1629 5.7249 12 8 -1.5437 2.7696 5.2124 13 7 -0.5241 0.2576 4.2007 14 6 -0.4843 -0.9266 4.8872 15 1 0.1794 -1.0391 5.7319 16 6 -1.2968 -1.9824 4.4976 17 7 -1.2589 -3.1204 5.1578 18 14 -2.4452 -1.7876 3.0372 19 1 -1.7408 -2.1969 1.7956 20 1 -3.6431 -2.6434 3.2319 21 1 -2.8646 -0.3676 2.9232 22 6 1.7021 1.9925 -1.3054 23 6 1.0027 1.3222 -2.2912 24 6 0.7195 1.9523 -3.4885 25 6 1.1359 3.2535 -3.7016 26 6 1.8361 3.9252 -2.7178 27 6 2.1146 3.2972 -1.5154 28 9 2.7930 3.9555 -0.5502 29 1 -0.3634 0.6309 -0.8112 30 1 -0.3634 -1.0180 -0.1407 31 1 -0.3633 0.3871 0.9519 32 1 3.7491 0.6918 1.1138 33 1 3.9402 0.6067 -0.6539 34 1 3.9696 2.1845 0.1700 35 1 1.2840 0.5539 2.4110 36 1 1.2943 3.0690 3.6958 37 1 -0.3535 2.7481 3.1041 38 1 -0.6151 1.4898 6.5420 39 1 0.3183 2.9369 6.0918 40 1 -2.0332 3.2888 5.8651 41 1 -1.1204 0.3588 3.4424 42 1 -1.8270 -3.8581 4.8857 43 1 0.6766 0.3059 -2.1258 44 1 0.1726 1.4279 -4.2581 45 1 0.9144 3.7447 -4.6375 46 1 2.1616 4.9414 -2.8847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725531666.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:28 Heat of formation + Delta-G solvation = -140.211604 kcal Electronic energy + Delta-G solvation = -31680.680479 eV Core-core repulsion = 27292.344790 eV Total energy + Delta-G solvation = -4388.335690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.78969 -41.96046 -39.90390 -38.78898 -38.43753 -36.51148 -35.27988 -33.89754 -33.39129 -31.76652 -30.85868 -30.45588 -27.58682 -27.08366 -25.51041 -25.08853 -23.75497 -23.05641 -21.75775 -21.07336 -19.92807 -18.98288 -18.74915 -18.32068 -17.76126 -17.18606 -17.03008 -16.81129 -16.49900 -16.41719 -16.16616 -15.98391 -15.61034 -15.55048 -15.06867 -14.89521 -14.74901 -14.49076 -14.44926 -14.26574 -13.94583 -13.56432 -13.39552 -13.35976 -13.16285 -13.09598 -12.90586 -12.75870 -12.63979 -12.48234 -12.37777 -12.12215 -11.88665 -11.80078 -11.39851 -11.06227 -10.79081 -10.61497 -10.10591 -9.94308 -9.60548 -9.34157 -8.00858 -5.33774 0.10893 0.22995 1.35290 1.38079 1.40245 1.46060 1.96976 2.47138 2.49788 2.62346 3.28075 3.29990 3.38811 3.40202 3.55729 3.66904 3.76821 3.88905 3.89357 4.11093 4.21914 4.28097 4.34399 4.36337 4.40029 4.48352 4.52681 4.56111 4.60800 4.70739 4.75190 4.84061 4.93805 4.97795 5.10393 5.11631 5.15664 5.30799 5.36183 5.42276 5.74522 5.77407 5.92113 6.22008 6.42542 6.99123 7.05129 7.07820 7.81824 8.01307 9.20078 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013405 B = 0.004081 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.260125 B = 6860.075886 C = 7910.546992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.359 6.359 3 C 0.147 3.853 4 C -0.135 4.135 5 C 0.489 3.511 6 O -0.553 6.553 7 N -0.708 5.708 8 C 0.127 3.873 9 C 0.166 3.834 10 H 0.080 0.920 11 C 0.066 3.934 12 O -0.584 6.584 13 N -0.738 5.738 14 C -0.224 4.224 15 H 0.067 0.933 16 C -0.051 4.051 17 N -0.979 5.979 18 Si 0.935 3.065 19 H -0.262 1.262 20 H -0.302 1.302 21 H -0.268 1.268 22 C -0.163 4.163 23 C -0.092 4.092 24 C -0.133 4.133 25 C -0.078 4.078 26 C -0.170 4.170 27 C 0.114 3.886 28 F -0.139 7.139 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.033 0.967 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.412 0.588 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.036 0.964 39 H 0.068 0.932 40 H 0.388 0.612 41 H 0.362 0.638 42 H 0.256 0.744 43 H 0.146 0.854 44 H 0.161 0.839 45 H 0.167 0.833 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.776 13.309 -16.892 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.277 6.277 3 C 0.104 3.896 4 C -0.192 4.192 5 C 0.274 3.726 6 O -0.432 6.432 7 N -0.360 5.360 8 C 0.003 3.997 9 C 0.057 3.943 10 H 0.098 0.902 11 C -0.015 4.015 12 O -0.391 6.391 13 N -0.381 5.381 14 C -0.355 4.355 15 H 0.085 0.915 16 C -0.243 4.243 17 N -0.629 5.629 18 Si 0.764 3.236 19 H -0.188 1.188 20 H -0.230 1.230 21 H -0.193 1.193 22 C -0.164 4.164 23 C -0.110 4.110 24 C -0.151 4.151 25 C -0.096 4.096 26 C -0.188 4.188 27 C 0.095 3.905 28 F -0.117 7.117 29 H 0.088 0.912 30 H 0.124 0.876 31 H 0.052 0.948 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.249 0.751 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.236 0.764 41 H 0.195 0.805 42 H 0.065 0.935 43 H 0.164 0.836 44 H 0.179 0.821 45 H 0.185 0.815 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.057 13.557 -17.300 23.085 hybrid contribution -1.178 -0.181 0.738 1.401 sum 5.879 13.376 -16.563 22.086 Atomic orbital electron populations 1.23380 0.80403 1.04609 1.01309 1.88036 1.20481 1.24697 1.94532 1.20505 0.96990 0.82764 0.89391 1.21831 0.88375 1.04058 1.04943 1.21346 0.78248 0.88360 0.84634 1.90706 1.53753 1.15993 1.82730 1.46099 1.63604 1.13539 1.12773 1.21467 0.98497 0.93757 0.86005 1.20810 0.93883 0.87002 0.92595 0.90185 1.22792 0.86820 0.95525 0.96323 1.86465 1.39764 1.70636 1.42196 1.42669 1.48174 1.10773 1.36527 1.19008 1.18174 0.88852 1.09427 0.91544 1.25269 1.01605 0.95693 1.01743 1.69849 1.44408 1.04519 1.44162 0.85715 0.79153 0.77305 0.81453 1.18764 1.22961 1.19348 1.20065 1.04697 0.94494 0.97187 1.21296 0.95886 1.00993 0.92813 1.21561 1.00790 0.95590 0.97170 1.21477 0.94523 0.94336 0.99259 1.21451 1.02788 1.02176 0.92427 1.17712 0.95644 0.90277 0.86865 1.91482 1.77057 1.80598 1.62563 0.91187 0.87576 0.94798 0.90223 0.88799 0.90157 0.75122 0.90075 0.92312 0.94535 0.91350 0.76363 0.80485 0.93471 0.83626 0.82145 0.81507 0.83187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 9.13 113.37 1.03 1.00 16 2 O -0.36 -10.38 9.08 -148.98 -1.35 -11.74 16 3 C 0.15 4.19 0.80 -12.29 -0.01 4.18 16 4 C -0.13 -3.29 8.64 71.98 0.62 -2.67 16 5 C 0.49 16.37 5.48 87.66 0.48 16.85 16 6 O -0.55 -21.26 13.25 -3.05 -0.04 -21.30 16 7 N -0.71 -23.48 4.12 -463.07 -1.91 -25.39 16 8 C 0.13 4.21 5.12 86.38 0.44 4.66 16 9 C 0.17 5.88 2.84 44.99 0.13 6.01 16 10 H 0.08 2.77 8.08 -2.39 -0.02 2.75 16 11 C 0.07 2.08 6.86 71.98 0.49 2.58 16 12 O -0.58 -18.60 12.64 -148.98 -1.88 -20.49 16 13 N -0.74 -32.56 4.31 -322.93 -1.39 -33.95 16 14 C -0.22 -11.95 10.41 84.03 0.87 -11.07 16 15 H 0.07 3.83 8.06 -2.91 -0.02 3.81 16 16 C -0.05 -2.89 5.50 84.86 0.47 -2.43 16 17 N -0.98 -60.66 13.97 21.65 0.30 -60.36 16 18 Si 0.94 44.41 27.74 68.60 1.90 46.32 16 19 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 21 H -0.27 -12.26 6.52 99.48 0.65 -11.61 16 22 C -0.16 -4.35 4.42 -19.82 -0.09 -4.43 16 23 C -0.09 -2.00 7.70 22.26 0.17 -1.83 16 24 C -0.13 -2.15 10.04 22.27 0.22 -1.93 16 25 C -0.08 -1.19 10.04 22.26 0.22 -0.97 16 26 C -0.17 -3.46 10.03 22.31 0.22 -3.24 16 27 C 0.11 3.11 6.19 22.37 0.14 3.25 16 28 F -0.14 -4.35 12.89 44.97 0.58 -3.77 16 29 H 0.07 1.77 5.13 -2.39 -0.01 1.76 16 30 H 0.11 2.81 8.14 -2.38 -0.02 2.79 16 31 H 0.03 1.12 6.25 -2.39 -0.01 1.10 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.08 1.98 6.53 -2.39 -0.02 1.97 16 35 H 0.41 14.10 7.28 -92.71 -0.68 13.42 16 36 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.06 2.18 7.39 -2.39 -0.02 2.16 16 38 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.39 8.48 9.12 -74.06 -0.68 7.80 16 41 H 0.36 16.39 5.66 -92.71 -0.52 15.86 16 42 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 43 H 0.15 2.96 5.52 -2.91 -0.02 2.95 16 44 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 45 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 46 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -72.71 372.29 0.75 -71.97 By element: Atomic # 1 Polarization: 49.63 SS G_CDS: -0.89 Total: 48.74 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 5.43 Total: 9.96 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -3.00 Total: -119.70 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -3.28 Total: -53.52 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.58 Total: -3.77 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.90 Total: 46.32 kcal Total: -72.71 0.75 -71.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725531666.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.243 kcal (2) G-P(sol) polarization free energy of solvation -72.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds