Wall clock time and date at job start Sat Apr 11 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00232 * 2 1 4 4 C 1.52998 * 109.47250 * 54.60107 * 3 2 1 5 5 C 1.50697 * 109.47464 * 174.60308 * 3 2 1 6 6 O 1.21275 * 119.99936 * 144.99404 * 5 3 2 7 7 N 1.34776 * 119.99953 * 325.00208 * 5 3 2 8 8 C 1.46495 * 120.00159 * 179.97438 * 7 5 3 9 9 C 1.53008 * 109.47380 * 179.97438 * 8 7 5 10 10 H 1.09002 * 109.46392 * 64.99877 * 9 8 7 11 11 C 1.52998 * 109.47097 * 184.99940 * 9 8 7 12 12 O 1.42898 * 109.47242 * 55.00207 * 11 9 8 13 13 N 1.46499 * 109.46905 * 305.00376 * 9 8 7 14 14 C 1.36938 * 119.99770 * 155.00126 * 13 9 8 15 15 H 1.07999 * 119.99744 * 359.97438 * 14 13 9 16 16 C 1.38806 * 119.99962 * 179.97438 * 14 13 9 17 17 N 1.31622 * 119.99920 * 359.72447 * 16 14 13 18 18 Si 1.86799 * 120.00188 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47588 * 179.72583 * 18 16 14 20 20 H 1.48497 * 109.47201 * 299.72754 * 18 16 14 21 21 H 1.48502 * 109.46864 * 59.72180 * 18 16 14 22 22 C 1.50697 * 109.46903 * 294.60553 * 3 2 1 23 23 C 1.38227 * 120.01408 * 355.14950 * 22 3 2 24 24 C 1.38225 * 120.02529 * 179.72109 * 23 22 3 25 25 C 1.38264 * 120.05008 * 0.56051 * 24 23 22 26 26 C 1.38178 * 120.02535 * 359.71652 * 25 24 23 27 27 C 1.38439 * 120.01500 * 175.42935 * 22 3 2 28 28 F 1.35092 * 120.02231 * 359.97438 * 27 22 3 29 29 H 1.09003 * 109.47115 * 51.45538 * 1 2 3 30 30 H 1.08994 * 109.47116 * 171.45916 * 1 2 3 31 31 H 1.09004 * 109.46940 * 291.46106 * 1 2 3 32 32 H 1.08990 * 109.47247 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.47125 * 300.00492 * 4 3 2 34 34 H 1.09000 * 109.46936 * 60.00121 * 4 3 2 35 35 H 0.97003 * 119.99598 * 359.97438 * 7 5 3 36 36 H 1.09003 * 109.47208 * 59.99806 * 8 7 5 37 37 H 1.08996 * 109.47398 * 299.99583 * 8 7 5 38 38 H 1.08993 * 109.46732 * 175.00246 * 11 9 8 39 39 H 1.09003 * 109.46967 * 294.99913 * 11 9 8 40 40 H 0.96701 * 114.00485 * 179.97438 * 12 11 9 41 41 H 0.96993 * 120.00065 * 334.99413 * 13 9 8 42 42 H 0.96997 * 119.99865 * 0.26694 * 17 16 14 43 43 H 1.08001 * 119.98536 * 0.02562 * 23 22 3 44 44 H 1.07993 * 119.97185 * 180.25590 * 24 23 22 45 45 H 1.07997 * 119.98582 * 179.74540 * 25 24 23 46 46 H 1.08000 * 120.00891 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.4544 2.1113 1.1758 5 6 3.5068 1.1891 0.1336 6 8 4.2298 1.9763 -0.4394 7 7 4.0417 0.2101 0.8898 8 6 5.4965 0.0965 1.0193 9 6 5.8370 -1.0881 1.9259 10 1 5.5167 -2.0144 1.4489 11 6 7.3480 -1.1318 2.1620 12 8 7.7859 0.1261 2.6796 13 7 5.1465 -0.9354 3.2089 14 6 4.8633 -2.0383 3.9696 15 1 5.1487 -3.0207 3.6234 16 6 4.2095 -1.8936 5.1854 17 7 3.8665 -0.6958 5.6097 18 14 3.8226 -3.3981 6.2227 19 1 3.1319 -2.9767 7.4679 20 1 2.9429 -4.3157 5.4551 21 1 5.0854 -4.0981 6.5698 22 6 1.6742 2.0050 -1.2918 23 6 0.9954 1.3286 -2.2880 24 6 0.6820 1.9717 -3.4707 25 6 1.0570 3.2885 -3.6633 26 6 1.7406 3.9649 -2.6711 27 6 2.0501 3.3235 -1.4835 28 9 2.7180 3.9839 -0.5126 29 1 -0.3633 0.6404 -0.8038 30 1 -0.3633 -1.0162 -0.1526 31 1 -0.3633 0.3760 0.9565 32 1 1.8974 3.1071 1.1755 33 1 0.3720 2.1955 1.0792 34 1 1.6975 1.6054 2.1102 35 1 3.4633 -0.4194 1.3484 36 1 5.8952 1.0130 1.4545 37 1 5.9378 -0.0603 0.0351 38 1 7.5812 -1.9202 2.8775 39 1 7.8573 -1.3341 1.2197 40 1 8.7361 0.1705 2.8538 41 1 4.8899 -0.0531 3.5196 42 1 4.0672 0.0855 5.0710 43 1 0.7056 0.2987 -2.1403 44 1 0.1480 1.4437 -4.2468 45 1 0.8151 3.7887 -4.5894 46 1 2.0337 4.9933 -2.8220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725531669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:32 Heat of formation + Delta-G solvation = -120.429021 kcal Electronic energy + Delta-G solvation = -31186.149846 eV Core-core repulsion = 26798.671994 eV Total energy + Delta-G solvation = -4387.477852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.82525 -40.62943 -38.80056 -37.69939 -37.11696 -34.99259 -33.66012 -32.58549 -31.38244 -30.86013 -29.55421 -28.07847 -27.40626 -25.39966 -23.94132 -23.42217 -22.87544 -21.88896 -20.23415 -19.76757 -17.93749 -17.77965 -17.54962 -16.86197 -16.63698 -16.12221 -15.70072 -15.58508 -15.44465 -15.07784 -14.95883 -14.68796 -14.30853 -13.91231 -13.81139 -13.66321 -13.42019 -13.38532 -13.05971 -12.94088 -12.69132 -12.57049 -12.36406 -12.00476 -11.82876 -11.69180 -11.60793 -11.44752 -10.91369 -10.83371 -10.74728 -10.41992 -10.01531 -9.89270 -9.69355 -9.48019 -9.16978 -9.05604 -8.95606 -8.74510 -8.58294 -7.07765 -6.11487 -3.12422 0.96769 1.07283 2.72682 3.29128 3.49497 3.52534 3.56486 3.67503 3.70400 4.20076 4.33928 4.62406 4.63932 4.71534 4.87991 4.90074 4.94335 5.09692 5.18127 5.24025 5.33424 5.36619 5.47975 5.52266 5.57028 5.61722 5.61905 5.69666 5.85785 5.90522 5.96187 5.98714 5.99874 6.10227 6.12614 6.20752 6.31286 6.43083 6.69280 6.73602 6.83686 6.92196 7.75890 7.92856 8.15577 8.52510 8.74377 9.19116 10.05933 10.21603 11.36216 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014039 B = 0.003443 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.941842 B = 8131.503368 C = 9171.577482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.362 6.362 3 C 0.147 3.853 4 C -0.183 4.183 5 C 0.532 3.468 6 O -0.534 6.534 7 N -0.697 5.697 8 C 0.116 3.884 9 C 0.172 3.828 10 H 0.067 0.933 11 C 0.060 3.940 12 O -0.562 6.562 13 N -0.724 5.724 14 C -0.337 4.337 15 H 0.064 0.936 16 C -0.040 4.040 17 N -0.939 5.939 18 Si 1.079 2.921 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.297 1.297 22 C -0.139 4.139 23 C -0.081 4.081 24 C -0.140 4.140 25 C -0.088 4.088 26 C -0.163 4.163 27 C 0.144 3.856 28 F -0.123 7.123 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.415 0.585 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.028 0.972 40 H 0.364 0.636 41 H 0.371 0.629 42 H 0.257 0.743 43 H 0.141 0.859 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.748 4.716 -17.573 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.281 6.281 3 C 0.104 3.896 4 C -0.241 4.241 5 C 0.315 3.685 6 O -0.412 6.412 7 N -0.348 5.348 8 C -0.008 4.008 9 C 0.061 3.939 10 H 0.085 0.915 11 C -0.021 4.021 12 O -0.365 6.365 13 N -0.366 5.366 14 C -0.468 4.468 15 H 0.082 0.918 16 C -0.238 4.238 17 N -0.583 5.583 18 Si 0.910 3.090 19 H -0.211 1.211 20 H -0.223 1.223 21 H -0.224 1.224 22 C -0.141 4.141 23 C -0.099 4.099 24 C -0.158 4.158 25 C -0.106 4.106 26 C -0.182 4.182 27 C 0.124 3.876 28 F -0.101 7.101 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.252 0.748 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.046 0.954 40 H 0.209 0.791 41 H 0.205 0.795 42 H 0.068 0.932 43 H 0.159 0.841 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.380 4.499 -16.593 18.709 hybrid contribution 1.080 0.513 -0.890 1.490 sum -6.300 5.012 -17.483 19.247 Atomic orbital electron populations 1.23125 0.80663 1.03280 1.01328 1.88027 1.20485 1.24811 1.94764 1.20345 0.92006 0.84619 0.92658 1.22522 1.02014 1.01974 0.97574 1.19647 0.88011 0.81479 0.79376 1.90717 1.60701 1.42191 1.47579 1.45910 1.08582 1.31359 1.48961 1.21605 0.79557 1.00631 0.99014 1.20519 0.89771 0.95701 0.87930 0.91500 1.23018 0.97675 0.85767 0.95687 1.86551 1.27506 1.35100 1.87370 1.42348 1.68776 1.06841 1.18669 1.20009 1.36355 0.87402 1.03011 0.91813 1.25721 0.98664 1.03262 0.96191 1.70860 1.49363 0.97814 1.40304 0.83261 0.75884 0.73663 0.76208 1.21099 1.22257 1.22404 1.20045 1.03011 0.93460 0.97561 1.21073 0.96403 1.00364 0.92016 1.21134 1.02006 0.95161 0.97527 1.21016 0.96643 0.94572 0.98334 1.21133 1.02655 1.01404 0.93038 1.17357 0.93539 0.89893 0.86779 1.91507 1.77522 1.80178 1.60873 0.92701 0.88916 0.93055 0.89687 0.90835 0.89765 0.74772 0.90608 0.92000 0.93235 0.95412 0.79076 0.79480 0.93207 0.84131 0.85295 0.85132 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.05 101.05 0.91 1.04 16 2 O -0.36 -5.19 8.96 -35.23 -0.32 -5.51 16 3 C 0.15 2.25 0.79 -92.93 -0.07 2.18 16 4 C -0.18 -2.66 7.81 37.16 0.29 -2.37 16 5 C 0.53 9.83 6.61 -10.99 -0.07 9.76 16 6 O -0.53 -11.10 14.08 5.56 0.08 -11.02 16 7 N -0.70 -12.98 5.30 -60.30 -0.32 -13.30 16 8 C 0.12 2.19 5.12 -4.04 -0.02 2.17 16 9 C 0.17 3.41 2.84 -67.93 -0.19 3.22 16 10 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 11 C 0.06 1.08 6.86 37.16 0.25 1.33 16 12 O -0.56 -10.30 12.64 -35.23 -0.45 -10.74 16 13 N -0.72 -17.56 4.51 -53.42 -0.24 -17.81 16 14 C -0.34 -9.09 9.93 -15.06 -0.15 -9.23 16 15 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 16 C -0.04 -1.13 5.50 -17.43 -0.10 -1.22 16 17 N -0.94 -28.51 13.70 55.49 0.76 -27.75 16 18 Si 1.08 25.35 29.92 -169.99 -5.09 20.26 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.30 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16 22 C -0.14 -1.96 4.29 -104.55 -0.45 -2.41 16 23 C -0.08 -0.93 7.64 -39.59 -0.30 -1.23 16 24 C -0.14 -1.32 10.04 -39.58 -0.40 -1.71 16 25 C -0.09 -0.81 10.04 -39.59 -0.40 -1.21 16 26 C -0.16 -1.86 10.03 -39.52 -0.40 -2.26 16 27 C 0.14 2.08 6.18 -39.42 -0.24 1.83 16 28 F -0.12 -2.02 13.15 2.25 0.03 -1.99 16 29 H 0.05 0.50 5.14 -51.93 -0.27 0.24 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.53 6.85 -51.93 -0.36 0.18 16 32 H 0.08 1.28 5.96 -51.93 -0.31 0.97 16 33 H 0.07 0.88 6.68 -51.93 -0.35 0.53 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.41 8.00 7.58 -40.82 -0.31 7.69 16 36 H 0.08 1.58 7.39 -51.93 -0.38 1.20 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.36 4.84 9.12 45.56 0.42 5.26 16 41 H 0.37 9.73 6.63 -40.82 -0.27 9.46 16 42 H 0.26 7.80 6.77 -40.82 -0.28 7.53 16 43 H 0.14 1.45 5.66 -52.49 -0.30 1.15 16 44 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 45 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 374.85 15.07 5.65 5.65 Total: -1.00 -34.14 374.85 -6.63 -40.78 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: -5.41 Total: 21.54 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.33 Total: -0.11 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.20 Total: -58.85 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.68 Total: -27.28 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.03 Total: -1.99 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.09 Total: 20.26 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.14 -6.63 -40.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725531669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.654 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds