Wall clock time and date at job start Sat Apr 11 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00232 * 2 1 4 4 C 1.52998 * 109.47250 * 54.60107 * 3 2 1 5 5 C 1.50697 * 109.47464 * 174.60308 * 3 2 1 6 6 O 1.21275 * 119.99936 * 144.99404 * 5 3 2 7 7 N 1.34776 * 119.99953 * 325.00208 * 5 3 2 8 8 C 1.46495 * 120.00159 * 179.97438 * 7 5 3 9 9 C 1.53008 * 109.47380 * 179.97438 * 8 7 5 10 10 H 1.09002 * 109.46392 * 64.99877 * 9 8 7 11 11 C 1.52998 * 109.47097 * 184.99940 * 9 8 7 12 12 O 1.42898 * 109.47242 * 55.00207 * 11 9 8 13 13 N 1.46499 * 109.46905 * 305.00376 * 9 8 7 14 14 C 1.36938 * 119.99770 * 155.00126 * 13 9 8 15 15 H 1.07999 * 119.99744 * 359.97438 * 14 13 9 16 16 C 1.38806 * 119.99962 * 179.97438 * 14 13 9 17 17 N 1.31622 * 119.99920 * 359.72447 * 16 14 13 18 18 Si 1.86799 * 120.00188 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47588 * 179.72583 * 18 16 14 20 20 H 1.48497 * 109.47201 * 299.72754 * 18 16 14 21 21 H 1.48502 * 109.46864 * 59.72180 * 18 16 14 22 22 C 1.50697 * 109.46903 * 294.60553 * 3 2 1 23 23 C 1.38227 * 120.01408 * 355.14950 * 22 3 2 24 24 C 1.38225 * 120.02529 * 179.72109 * 23 22 3 25 25 C 1.38264 * 120.05008 * 0.56051 * 24 23 22 26 26 C 1.38178 * 120.02535 * 359.71652 * 25 24 23 27 27 C 1.38439 * 120.01500 * 175.42935 * 22 3 2 28 28 F 1.35092 * 120.02231 * 359.97438 * 27 22 3 29 29 H 1.09003 * 109.47115 * 51.45538 * 1 2 3 30 30 H 1.08994 * 109.47116 * 171.45916 * 1 2 3 31 31 H 1.09004 * 109.46940 * 291.46106 * 1 2 3 32 32 H 1.08990 * 109.47247 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.47125 * 300.00492 * 4 3 2 34 34 H 1.09000 * 109.46936 * 60.00121 * 4 3 2 35 35 H 0.97003 * 119.99598 * 359.97438 * 7 5 3 36 36 H 1.09003 * 109.47208 * 59.99806 * 8 7 5 37 37 H 1.08996 * 109.47398 * 299.99583 * 8 7 5 38 38 H 1.08993 * 109.46732 * 175.00246 * 11 9 8 39 39 H 1.09003 * 109.46967 * 294.99913 * 11 9 8 40 40 H 0.96701 * 114.00485 * 179.97438 * 12 11 9 41 41 H 0.96993 * 120.00065 * 334.99413 * 13 9 8 42 42 H 0.96997 * 119.99865 * 0.26694 * 17 16 14 43 43 H 1.08001 * 119.98536 * 0.02562 * 23 22 3 44 44 H 1.07993 * 119.97185 * 180.25590 * 24 23 22 45 45 H 1.07997 * 119.98582 * 179.74540 * 25 24 23 46 46 H 1.08000 * 120.00891 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.4544 2.1113 1.1758 5 6 3.5068 1.1891 0.1336 6 8 4.2298 1.9763 -0.4394 7 7 4.0417 0.2101 0.8898 8 6 5.4965 0.0965 1.0193 9 6 5.8370 -1.0881 1.9259 10 1 5.5167 -2.0144 1.4489 11 6 7.3480 -1.1318 2.1620 12 8 7.7859 0.1261 2.6796 13 7 5.1465 -0.9354 3.2089 14 6 4.8633 -2.0383 3.9696 15 1 5.1487 -3.0207 3.6234 16 6 4.2095 -1.8936 5.1854 17 7 3.8665 -0.6958 5.6097 18 14 3.8226 -3.3981 6.2227 19 1 3.1319 -2.9767 7.4679 20 1 2.9429 -4.3157 5.4551 21 1 5.0854 -4.0981 6.5698 22 6 1.6742 2.0050 -1.2918 23 6 0.9954 1.3286 -2.2880 24 6 0.6820 1.9717 -3.4707 25 6 1.0570 3.2885 -3.6633 26 6 1.7406 3.9649 -2.6711 27 6 2.0501 3.3235 -1.4835 28 9 2.7180 3.9839 -0.5126 29 1 -0.3633 0.6404 -0.8038 30 1 -0.3633 -1.0162 -0.1526 31 1 -0.3633 0.3760 0.9565 32 1 1.8974 3.1071 1.1755 33 1 0.3720 2.1955 1.0792 34 1 1.6975 1.6054 2.1102 35 1 3.4633 -0.4194 1.3484 36 1 5.8952 1.0130 1.4545 37 1 5.9378 -0.0603 0.0351 38 1 7.5812 -1.9202 2.8775 39 1 7.8573 -1.3341 1.2197 40 1 8.7361 0.1705 2.8538 41 1 4.8899 -0.0531 3.5196 42 1 4.0672 0.0855 5.0710 43 1 0.7056 0.2987 -2.1403 44 1 0.1480 1.4437 -4.2468 45 1 0.8151 3.7887 -4.5894 46 1 2.0337 4.9933 -2.8220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725531669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:31 Heat of formation + Delta-G solvation = -147.145113 kcal Electronic energy + Delta-G solvation = -31187.308343 eV Core-core repulsion = 26798.671994 eV Total energy + Delta-G solvation = -4388.636349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.91856 -41.80526 -40.02285 -38.81550 -38.57595 -36.58656 -35.44954 -33.67464 -33.11883 -31.74048 -30.59483 -29.81585 -28.44893 -26.80224 -25.54560 -24.93012 -23.74609 -23.02494 -21.85413 -21.05094 -19.60535 -19.04936 -18.78151 -18.27866 -17.89243 -17.20517 -17.08425 -16.77574 -16.56139 -16.46091 -16.19590 -15.85247 -15.65476 -15.46959 -15.21895 -15.19102 -14.99874 -14.59175 -14.34758 -13.97815 -13.92425 -13.60751 -13.45023 -13.31733 -13.08825 -13.03129 -12.72176 -12.58637 -12.53827 -12.50980 -12.10167 -11.88304 -11.86470 -11.28203 -11.13047 -10.93160 -10.88423 -10.80257 -10.14227 -9.94599 -9.64049 -9.11677 -8.33239 -5.28228 0.09222 0.21671 1.33788 1.60743 1.70335 1.86126 2.04883 2.53369 2.62323 2.73530 3.22870 3.36219 3.42691 3.49296 3.59527 3.70505 3.71956 3.85021 3.89675 4.09841 4.30093 4.31410 4.34171 4.41250 4.42653 4.43490 4.47905 4.49889 4.55565 4.72290 4.77036 4.83584 4.88313 4.93945 5.08613 5.09197 5.14352 5.30747 5.36121 5.41063 5.62937 5.86473 5.90971 6.43154 6.52172 6.95332 7.04636 7.10432 7.99510 8.14544 9.17125 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014039 B = 0.003443 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.941842 B = 8131.503368 C = 9171.577482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.378 6.378 3 C 0.154 3.846 4 C -0.178 4.178 5 C 0.524 3.476 6 O -0.561 6.561 7 N -0.699 5.699 8 C 0.128 3.872 9 C 0.168 3.832 10 H 0.075 0.925 11 C 0.066 3.934 12 O -0.585 6.585 13 N -0.733 5.733 14 C -0.327 4.327 15 H 0.072 0.928 16 C -0.101 4.101 17 N -0.973 5.973 18 Si 1.127 2.873 19 H -0.298 1.298 20 H -0.274 1.274 21 H -0.281 1.281 22 C -0.159 4.159 23 C -0.087 4.087 24 C -0.129 4.129 25 C -0.078 4.078 26 C -0.169 4.169 27 C 0.106 3.894 28 F -0.147 7.147 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.411 0.589 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.037 0.963 39 H 0.067 0.933 40 H 0.387 0.613 41 H 0.358 0.642 42 H 0.241 0.759 43 H 0.152 0.848 44 H 0.166 0.834 45 H 0.169 0.831 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.743 3.387 -20.278 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.297 6.297 3 C 0.111 3.889 4 C -0.235 4.235 5 C 0.309 3.691 6 O -0.441 6.441 7 N -0.349 5.349 8 C 0.003 3.997 9 C 0.059 3.941 10 H 0.093 0.907 11 C -0.014 4.014 12 O -0.391 6.391 13 N -0.375 5.375 14 C -0.458 4.458 15 H 0.090 0.910 16 C -0.293 4.293 17 N -0.621 5.621 18 Si 0.952 3.048 19 H -0.225 1.225 20 H -0.200 1.200 21 H -0.208 1.208 22 C -0.161 4.161 23 C -0.105 4.105 24 C -0.147 4.147 25 C -0.095 4.095 26 C -0.187 4.187 27 C 0.087 3.913 28 F -0.125 7.125 29 H 0.090 0.910 30 H 0.132 0.868 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.248 0.752 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.235 0.765 41 H 0.189 0.811 42 H 0.051 0.949 43 H 0.169 0.831 44 H 0.184 0.816 45 H 0.187 0.813 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.334 3.150 -19.352 21.305 hybrid contribution 1.412 0.946 -0.206 1.712 sum -6.922 4.097 -19.558 21.148 Atomic orbital electron populations 1.23378 0.78647 1.05041 1.01953 1.87990 1.22638 1.24154 1.94943 1.20097 0.89684 0.85295 0.93837 1.22466 1.03533 1.00938 0.96600 1.20305 0.89705 0.80601 0.78493 1.90683 1.61928 1.42915 1.48544 1.45941 1.08395 1.31539 1.49019 1.21438 0.79948 0.99052 0.99223 1.20751 0.90929 0.96311 0.86139 0.90678 1.22835 0.96170 0.85252 0.97185 1.86506 1.29787 1.35238 1.87611 1.42454 1.69565 1.05523 1.19933 1.20347 1.34341 0.88328 1.02772 0.91026 1.27084 0.99327 1.04730 0.98123 1.70983 1.52009 0.98289 1.40826 0.82633 0.76450 0.71246 0.74445 1.22491 1.20037 1.20779 1.20045 1.04790 0.93589 0.97661 1.21304 0.96141 1.00867 0.92207 1.21597 1.00637 0.95221 0.97200 1.21499 0.94669 0.94553 0.98819 1.21444 1.02620 1.02272 0.92394 1.17829 0.95165 0.90639 0.87709 1.91438 1.78397 1.80650 1.62037 0.90978 0.86840 0.93264 0.90890 0.88333 0.91833 0.75204 0.93004 0.90443 0.94482 0.91462 0.76518 0.81059 0.94882 0.83096 0.81610 0.81307 0.83346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.09 9.05 113.37 1.03 1.12 16 2 O -0.38 -10.77 8.96 -148.98 -1.33 -12.10 16 3 C 0.15 4.83 0.79 -12.29 -0.01 4.82 16 4 C -0.18 -5.43 7.81 71.98 0.56 -4.87 16 5 C 0.52 20.13 6.61 87.66 0.58 20.71 16 6 O -0.56 -24.27 14.08 -3.02 -0.04 -24.31 16 7 N -0.70 -26.91 5.30 -463.07 -2.45 -29.36 16 8 C 0.13 4.89 5.12 86.38 0.44 5.33 16 9 C 0.17 6.63 2.84 44.99 0.13 6.76 16 10 H 0.08 2.85 8.08 -2.39 -0.02 2.83 16 11 C 0.07 2.30 6.86 71.98 0.49 2.80 16 12 O -0.58 -21.16 12.64 -148.98 -1.88 -23.04 16 13 N -0.73 -36.26 4.51 -322.94 -1.46 -37.71 16 14 C -0.33 -17.66 9.93 84.03 0.83 -16.82 16 15 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 16 C -0.10 -5.76 5.50 84.86 0.47 -5.29 16 17 N -0.97 -60.85 13.70 21.65 0.30 -60.55 16 18 Si 1.13 51.08 29.92 68.60 2.05 53.13 16 19 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 22 C -0.16 -4.43 4.29 -19.82 -0.09 -4.51 16 23 C -0.09 -1.82 7.64 22.26 0.17 -1.65 16 24 C -0.13 -1.92 10.04 22.27 0.22 -1.69 16 25 C -0.08 -1.16 10.04 22.26 0.22 -0.93 16 26 C -0.17 -3.60 10.03 22.31 0.22 -3.37 16 27 C 0.11 3.08 6.18 22.37 0.14 3.22 16 28 F -0.15 -5.12 13.15 44.97 0.59 -4.53 16 29 H 0.07 1.18 5.14 -2.39 -0.01 1.16 16 30 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 0.99 6.85 -2.38 -0.02 0.97 16 32 H 0.07 2.38 5.96 -2.39 -0.01 2.37 16 33 H 0.10 2.41 6.68 -2.39 -0.02 2.40 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.41 16.44 7.58 -92.71 -0.70 15.74 16 36 H 0.05 2.24 7.39 -2.39 -0.02 2.22 16 37 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.39 9.87 9.12 -74.06 -0.68 9.19 16 41 H 0.36 19.57 6.63 -92.71 -0.61 18.96 16 42 H 0.24 15.34 6.77 -92.71 -0.63 14.71 16 43 H 0.15 2.73 5.66 -2.91 -0.02 2.72 16 44 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 45 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 46 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -76.85 374.85 0.39 -76.46 By element: Atomic # 1 Polarization: 57.21 SS G_CDS: -0.80 Total: 56.41 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 5.42 Total: 5.62 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -3.61 Total: -127.63 kcal Atomic # 8 Polarization: -56.20 SS G_CDS: -3.26 Total: -59.46 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.59 Total: -4.53 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 2.05 Total: 53.13 kcal Total: -76.85 0.39 -76.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725531669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.684 kcal (2) G-P(sol) polarization free energy of solvation -76.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds