Wall clock time and date at job start Sat Apr 11 2020 06:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 114.00257 * 2 1 4 4 C 1.47199 * 109.47084 * 180.02562 * 3 2 1 5 5 C 3.40066 * 161.18903 * 359.97438 * 2 1 3 6 6 C 4.78782 * 168.18599 * 359.97438 * 2 1 3 7 7 N 1.46893 * 109.47209 * 75.73158 * 6 5 4 8 8 C 1.46905 * 111.00229 * 179.97438 * 7 6 5 9 9 H 1.09003 * 110.30235 * 314.93339 * 8 7 6 10 10 C 1.54378 * 110.34408 * 77.11069 * 8 7 6 11 11 N 1.48146 * 104.61709 * 142.73671 * 10 8 7 12 12 C 1.34780 * 127.83330 * 140.43338 * 11 10 8 13 13 O 1.21285 * 119.99686 * 180.02562 * 12 11 10 14 14 C 1.50694 * 120.00469 * 0.02676 * 12 11 10 15 15 S 1.81007 * 109.47481 * 179.97438 * 14 12 11 16 16 C 1.76192 * 100.00061 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00282 * 359.97438 * 16 15 14 18 18 C 1.38797 * 120.00126 * 180.02562 * 16 15 14 19 19 N 1.31633 * 119.99899 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00490 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47115 * 89.99673 * 20 18 16 22 22 H 1.48498 * 109.47556 * 209.99867 * 20 18 16 23 23 H 1.48501 * 109.47062 * 329.99928 * 20 18 16 24 24 C 1.48140 * 104.32828 * 320.41724 * 11 10 8 25 25 C 1.54292 * 110.34218 * 192.65008 * 8 7 6 26 26 C 1.53003 * 110.34126 * 359.97438 * 25 8 7 27 27 C 1.52996 * 110.34267 * 122.25305 * 25 8 7 28 28 H 1.08994 * 109.47302 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46796 * 300.00041 * 1 2 3 30 30 H 1.09007 * 109.47320 * 59.99531 * 1 2 3 31 31 H 1.09006 * 109.46976 * 300.00436 * 3 2 1 32 32 H 1.08996 * 109.47084 * 59.99919 * 3 2 1 33 33 H 1.09008 * 109.46877 * 195.72805 * 6 5 4 34 34 H 1.08997 * 109.47386 * 315.72491 * 6 5 4 35 35 H 1.00903 * 111.00455 * 56.04555 * 7 6 5 36 36 H 1.08996 * 110.40923 * 261.52394 * 10 8 7 37 37 H 1.09010 * 110.41007 * 23.83564 * 10 8 7 38 38 H 1.09003 * 109.47426 * 300.00241 * 14 12 11 39 39 H 1.09003 * 109.46815 * 59.99932 * 14 12 11 40 40 H 0.96997 * 120.00614 * 179.97438 * 19 18 16 41 41 H 1.08999 * 110.41189 * 158.36804 * 24 11 10 42 42 H 1.09007 * 110.40422 * 280.68453 * 24 11 10 43 43 H 1.09003 * 109.47387 * 66.15546 * 26 25 8 44 44 H 1.08997 * 109.46764 * 186.15250 * 26 25 8 45 45 H 1.08991 * 109.47201 * 306.15043 * 26 25 8 46 46 H 1.09006 * 109.47019 * 59.99887 * 27 25 8 47 47 H 1.08999 * 109.47391 * 179.97438 * 27 25 8 48 48 H 1.08996 * 109.47685 * 300.00519 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.4776 1.1892 -0.0006 5 6 4.6480 1.0965 -0.0005 6 6 6.1153 0.9802 -0.0004 7 7 6.5766 0.6013 -1.3426 8 6 8.0398 0.4762 -1.3807 9 1 8.5049 1.3191 -0.8695 10 6 8.4818 -0.8540 -0.7339 11 7 9.6259 -1.3084 -1.5580 12 6 10.7679 -1.8888 -1.1387 13 8 11.6178 -2.2061 -1.9436 14 6 10.9886 -2.1433 0.3301 15 16 12.6019 -2.9279 0.5708 16 6 12.5971 -3.1061 2.3237 17 1 11.7488 -2.7654 2.8988 18 6 13.6838 -3.6835 2.9656 19 7 14.7179 -4.0984 2.2647 20 14 13.6791 -3.8718 4.8240 21 1 13.0840 -5.1831 5.1871 22 1 15.0727 -3.8030 5.3322 23 1 12.8766 -2.7792 5.4302 24 6 9.2301 -0.9807 -2.9474 25 6 8.5331 0.3927 -2.8403 26 6 7.3492 0.4647 -3.8068 27 6 9.5280 1.5181 -3.1306 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 1.6886 1.8464 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 6.5557 1.9377 0.2782 34 1 6.4194 0.2181 0.7170 35 1 6.2521 1.2590 -2.0356 36 1 8.7971 -0.6894 0.2964 37 1 7.6715 -1.5823 -0.7707 38 1 10.9599 -1.1975 0.8712 39 1 10.2053 -2.8012 0.7066 40 1 15.4776 -4.5016 2.7132 41 1 10.1099 -0.9116 -3.5871 42 1 8.5390 -1.7306 -3.3325 43 1 6.8861 1.4493 -3.7414 44 1 7.7004 0.2953 -4.8246 45 1 6.6178 -0.2990 -3.5430 46 1 10.3832 1.4289 -2.4606 47 1 9.8674 1.4456 -4.1639 48 1 9.0429 2.4815 -2.9739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725655234.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:07 Heat of formation + Delta-G solvation = -41.955059 kcal Electronic energy + Delta-G solvation = -26456.381955 eV Core-core repulsion = 22638.520165 eV Total energy + Delta-G solvation = -3817.861790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.42709 -39.50935 -38.91330 -36.64362 -34.88958 -34.59176 -33.81247 -31.13748 -30.27949 -28.79444 -28.19261 -27.76268 -26.88923 -26.73942 -25.58877 -23.18020 -20.88140 -20.16990 -19.40947 -18.43684 -18.00450 -17.43301 -17.28154 -16.89531 -16.86030 -16.83115 -16.62377 -16.18679 -15.84790 -15.59108 -15.05680 -14.93623 -14.71920 -14.47563 -14.24159 -13.90090 -13.75764 -13.68190 -13.46758 -13.24077 -13.14313 -13.06091 -12.89901 -12.82676 -12.63154 -12.53210 -12.42602 -11.88938 -11.85546 -11.69923 -11.57692 -11.29410 -11.15097 -11.08850 -10.99198 -10.48763 -10.29657 -9.83176 -9.46213 -8.68880 -8.35287 -6.14073 1.21749 1.41088 1.42101 1.43621 1.52893 1.54481 1.57463 2.04530 2.26321 2.92056 2.98665 3.14806 3.24913 3.39799 3.48810 3.59578 3.85516 3.87967 4.20662 4.24072 4.25646 4.28661 4.32272 4.41527 4.42392 4.45959 4.48409 4.55525 4.61024 4.61930 4.69777 4.75370 4.78969 4.81918 4.87503 4.89844 4.96156 5.07976 5.11623 5.21870 5.32825 5.40862 5.52077 5.90451 6.16448 6.19031 6.33365 6.42283 6.57221 7.05599 7.08772 8.73980 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009929 B = 0.002266 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.476913 B =12352.801865 C =14539.154394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.173 3.827 4 C -0.203 4.203 5 C -0.159 4.159 6 C 0.165 3.835 7 N -0.674 5.674 8 C 0.091 3.909 9 H 0.069 0.931 10 C 0.102 3.898 11 N -0.619 5.619 12 C 0.553 3.447 13 O -0.567 6.567 14 C -0.120 4.120 15 S -0.148 6.148 16 C -0.546 4.546 17 H 0.082 0.918 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.258 1.258 24 C 0.111 3.889 25 C -0.066 4.066 26 C -0.130 4.130 27 C -0.137 4.137 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.359 0.641 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.271 0.729 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.036 0.964 47 H 0.064 0.936 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.245 17.150 -7.242 34.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C 0.098 3.902 4 C -0.204 4.204 5 C -0.159 4.159 6 C 0.038 3.962 7 N -0.309 5.309 8 C -0.020 4.020 9 H 0.087 0.913 10 C -0.021 4.021 11 N -0.354 5.354 12 C 0.342 3.658 13 O -0.445 6.445 14 C -0.271 4.271 15 S 0.079 5.921 16 C -0.694 4.694 17 H 0.101 0.899 18 C -0.192 4.192 19 N -0.547 5.547 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.181 1.181 24 C -0.011 4.011 25 C -0.067 4.067 26 C -0.188 4.188 27 C -0.195 4.195 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.182 0.818 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.055 0.945 47 H 0.083 0.917 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -27.729 15.736 -8.307 32.948 hybrid contribution -0.324 0.915 1.879 2.115 sum -28.054 16.651 -6.428 33.251 Atomic orbital electron populations 1.22981 0.78408 1.04054 1.01584 1.87939 1.22221 1.28072 1.95790 1.19307 0.82470 0.85235 1.03153 1.22409 0.93948 1.04059 1.00009 1.22566 0.94093 0.97159 1.02120 1.19008 0.83293 1.01502 0.92405 1.60563 1.09164 1.55724 1.05494 1.22349 0.87561 0.96400 0.95651 0.91307 1.22655 0.87655 0.96427 0.95331 1.48790 1.16530 1.59989 1.10083 1.19690 0.80128 0.76274 0.89720 1.90688 1.44340 1.52759 1.56728 1.23297 1.03171 1.05204 0.95422 1.85579 1.18361 1.78341 1.09811 1.23181 1.07424 1.47065 0.91692 0.89949 1.26143 0.93907 0.93954 1.05170 1.70183 1.07187 1.38983 1.38342 0.84942 0.77926 0.79208 0.75832 1.19317 1.20206 1.18141 1.22594 0.99005 0.96568 0.82954 1.21525 0.96528 0.93854 0.94815 1.21712 0.96010 1.03214 0.97815 1.21878 0.97951 0.97737 1.01891 0.88886 0.92397 0.92260 0.88816 0.89068 0.90617 0.88120 0.81784 0.89660 0.89326 0.87524 0.87788 0.91959 0.91629 0.90186 0.90678 0.91824 0.91090 0.94461 0.91676 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.42 -7.08 10.66 -148.98 -1.59 -8.66 16 3 C 0.17 2.17 6.41 70.18 0.45 2.62 16 4 C -0.20 -3.65 13.73 31.12 0.43 -3.22 16 5 C -0.16 -2.79 13.60 31.12 0.42 -2.37 16 6 C 0.17 2.23 6.00 84.50 0.51 2.74 16 7 N -0.67 -8.98 5.22 -496.62 -2.59 -11.57 16 8 C 0.09 1.41 2.99 45.82 0.14 1.55 16 9 H 0.07 1.01 7.59 -2.39 -0.02 0.99 16 10 C 0.10 2.15 6.07 86.53 0.53 2.68 16 11 N -0.62 -18.04 3.32 -807.98 -2.68 -20.72 16 12 C 0.55 22.20 7.93 87.65 0.70 22.90 16 13 O -0.57 -27.94 16.13 -3.05 -0.05 -27.98 16 14 C -0.12 -5.03 5.14 71.23 0.37 -4.66 16 15 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 16 C -0.55 -31.62 9.50 67.95 0.65 -30.98 16 17 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 18 C 0.01 0.75 5.49 84.86 0.47 1.22 16 19 N -0.91 -56.49 13.22 21.65 0.29 -56.20 16 20 Si 1.00 44.00 29.55 68.60 2.03 46.03 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 24 C 0.11 2.65 6.14 86.53 0.53 3.19 16 25 C -0.07 -1.06 1.03 -51.27 -0.05 -1.11 16 26 C -0.13 -1.50 7.19 71.98 0.52 -0.98 16 27 C -0.14 -2.20 8.24 71.98 0.59 -1.61 16 28 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.06 0.30 8.14 -2.38 -0.02 0.28 16 31 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.78 8.11 -2.38 -0.02 0.76 16 34 H 0.10 1.39 7.75 -2.39 -0.02 1.37 16 35 H 0.36 3.89 6.35 -89.69 -0.57 3.32 16 36 H 0.08 1.72 7.30 -2.39 -0.02 1.70 16 37 H 0.09 1.84 8.06 -2.38 -0.02 1.82 16 38 H 0.11 4.04 7.95 -2.39 -0.02 4.02 16 39 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 40 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 41 H 0.07 1.82 7.60 -2.39 -0.02 1.80 16 42 H 0.08 1.78 7.87 -2.38 -0.02 1.76 16 43 H 0.07 0.60 7.07 -2.39 -0.02 0.58 16 44 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.07 0.93 7.56 -2.39 -0.02 0.92 16 46 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -80.80 411.20 2.10 -78.70 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.38 Total: 16.60 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 7.48 Total: -6.58 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -4.99 Total: -88.49 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -1.64 Total: -36.65 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -80.80 2.10 -78.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725655234.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.745 kcal (2) G-P(sol) polarization free energy of solvation -80.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds