Wall clock time and date at job start Sat Apr 11 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47137 * 2 1 4 4 C 1.50692 * 109.47283 * 120.00317 * 2 1 3 5 5 C 1.37474 * 123.35162 * 304.22584 * 4 2 1 6 6 C 1.33824 * 115.09958 * 180.27106 * 5 4 2 7 7 S 1.70615 * 110.95462 * 359.74919 * 6 5 4 8 8 C 1.36648 * 123.35562 * 124.02655 * 4 2 1 9 9 C 1.46585 * 125.45506 * 0.02562 * 8 4 2 10 10 O 1.21705 * 119.99807 * 273.49596 * 9 8 4 11 11 N 1.34771 * 120.00261 * 93.49776 * 9 8 4 12 12 C 1.46503 * 119.99793 * 5.00609 * 11 9 8 13 13 C 1.46499 * 120.00151 * 185.01010 * 11 9 8 14 14 C 1.53001 * 109.46950 * 269.99596 * 13 11 9 15 15 H 1.09003 * 109.46614 * 60.00546 * 14 13 11 16 16 O 1.42896 * 109.47225 * 300.00290 * 14 13 11 17 17 C 1.53004 * 109.46871 * 180.02562 * 14 13 11 18 18 N 1.46504 * 109.47061 * 185.00415 * 17 14 13 19 19 C 1.46496 * 120.00168 * 89.99780 * 18 17 14 20 20 C 1.36941 * 119.99491 * 270.00119 * 18 17 14 21 21 H 1.07996 * 120.00536 * 24.11273 * 20 18 17 22 22 C 1.38809 * 119.99392 * 204.10669 * 20 18 17 23 23 N 1.31615 * 120.00574 * 9.93685 * 22 20 18 24 24 Si 1.86806 * 119.99835 * 189.93331 * 22 20 18 25 25 H 1.48498 * 109.47309 * 60.00092 * 24 22 20 26 26 H 1.48496 * 109.47254 * 180.02562 * 24 22 20 27 27 H 1.48509 * 109.46903 * 300.00132 * 24 22 20 28 28 H 1.08997 * 109.47663 * 59.99537 * 1 2 3 29 29 H 1.09000 * 109.47358 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46958 * 299.99460 * 1 2 3 31 31 H 1.09000 * 109.46626 * 240.00137 * 2 1 3 32 32 H 1.09004 * 109.47273 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47320 * 299.99954 * 3 2 1 34 34 H 1.09000 * 109.47251 * 60.00520 * 3 2 1 35 35 H 1.07998 * 122.45354 * 359.97438 * 5 4 2 36 36 H 1.08008 * 124.51835 * 179.77003 * 6 5 4 37 37 H 1.08999 * 109.47250 * 266.97253 * 12 11 9 38 38 H 1.09001 * 109.46784 * 26.97418 * 12 11 9 39 39 H 1.09000 * 109.46967 * 146.97135 * 12 11 9 40 40 H 1.09004 * 109.47312 * 149.99930 * 13 11 9 41 41 H 1.09002 * 109.47211 * 30.00071 * 13 11 9 42 42 H 0.96701 * 113.99602 * 299.99715 * 16 14 13 43 43 H 1.08998 * 109.47312 * 304.99749 * 17 14 13 44 44 H 1.08993 * 109.47083 * 65.00173 * 17 14 13 45 45 H 1.08996 * 109.47292 * 85.75911 * 19 18 17 46 46 H 1.09003 * 109.47119 * 205.76013 * 19 18 17 47 47 H 1.08994 * 109.47126 * 325.75482 * 19 18 17 48 48 H 0.97003 * 120.00519 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2303 5 6 1.6753 -0.3522 2.5087 6 6 2.2231 -1.0925 3.4796 7 16 3.2299 -2.3058 2.8275 8 6 2.8850 -1.7774 1.1864 9 6 3.4298 -2.3807 -0.0334 10 8 2.8017 -3.2435 -0.6184 11 7 4.6262 -1.9800 -0.5070 12 6 5.4320 -1.0223 0.2544 13 6 5.1210 -2.5021 -1.7833 14 6 5.9333 -3.7743 -1.5334 15 1 5.2998 -4.5219 -1.0561 16 8 7.0398 -3.4731 -0.6808 17 6 6.4506 -4.3192 -2.8663 18 7 7.1261 -5.5996 -2.6413 19 6 6.3657 -6.8501 -2.7053 20 6 8.4683 -5.6273 -2.3710 21 1 8.9514 -4.7605 -1.9448 22 6 9.2078 -6.7696 -2.6448 23 7 8.6710 -7.7505 -3.3391 24 14 10.9651 -6.9147 -2.0281 25 1 10.9785 -6.8254 -0.5458 26 1 11.5320 -8.2204 -2.4509 27 1 11.7822 -5.8131 -2.5977 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8932 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.0057 0.4698 2.7146 36 1 2.0506 -0.9421 4.5352 37 1 5.2149 -0.0108 -0.0890 38 1 5.1906 -1.1060 1.3141 39 1 6.4900 -1.2376 0.1047 40 1 5.7545 -1.7544 -2.2607 41 1 4.2769 -2.7317 -2.4336 42 1 7.6471 -2.8134 -1.0428 43 1 5.6132 -4.4652 -3.5486 44 1 7.1537 -3.6088 -3.3008 45 1 6.3143 -7.1915 -3.7392 46 1 6.8600 -7.6074 -2.0968 47 1 5.3573 -6.6819 -2.3276 48 1 9.1877 -8.5489 -3.5301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734546030.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:44 Heat of formation + Delta-G solvation = -30.737246 kcal Electronic energy + Delta-G solvation = -28240.403433 eV Core-core repulsion = 24423.028084 eV Total energy + Delta-G solvation = -3817.375349 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.24391 -38.64378 -37.28288 -35.29745 -34.44847 -34.35226 -31.46635 -30.51032 -29.19675 -27.41371 -26.85718 -26.00365 -25.64043 -24.39769 -22.31910 -22.04572 -20.52268 -20.44910 -18.20475 -17.77604 -16.86517 -16.71740 -16.36647 -15.75760 -15.47748 -14.97862 -14.65059 -14.49154 -14.35215 -13.94001 -13.82068 -13.63046 -13.40617 -13.23573 -13.09309 -12.82328 -12.69298 -12.51401 -12.40270 -12.30593 -11.82897 -11.68956 -11.55636 -11.40440 -11.06150 -11.03150 -10.86720 -10.80393 -10.64344 -10.56212 -10.27836 -10.11767 -9.91341 -9.85684 -9.68925 -8.91896 -8.64631 -8.56621 -8.32648 -6.60410 -5.64710 -3.09463 0.57302 1.14696 1.75135 2.33450 2.75361 3.05000 3.43499 3.49035 3.50677 4.40599 4.50801 4.56141 4.64487 4.88110 4.91222 4.93092 5.09494 5.15075 5.17251 5.27887 5.34029 5.35136 5.39456 5.46196 5.52407 5.54839 5.66885 5.71917 5.78473 5.82304 5.87546 5.92103 5.98624 5.99400 6.09668 6.14076 6.21062 6.46871 6.58518 6.80330 6.92465 7.30142 7.48332 7.78140 7.90749 8.09165 8.27117 8.51141 9.32532 9.94832 10.45018 11.42146 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.002672 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.275545 B =10475.732567 C =10859.905916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 C -0.140 4.140 4 C -0.050 4.050 5 C -0.133 4.133 6 C -0.251 4.251 7 S 0.223 5.777 8 C -0.246 4.246 9 C 0.588 3.412 10 O -0.523 6.523 11 N -0.593 5.593 12 C 0.082 3.918 13 C 0.083 3.917 14 C 0.071 3.929 15 H 0.092 0.908 16 O -0.544 6.544 17 C 0.126 3.874 18 N -0.593 5.593 19 C 0.162 3.838 20 C -0.239 4.239 21 H 0.068 0.932 22 C -0.004 4.004 23 N -0.913 5.913 24 Si 0.906 3.094 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.285 1.285 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.140 0.860 36 H 0.166 0.834 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.359 0.641 43 H 0.044 0.956 44 H 0.050 0.950 45 H 0.017 0.983 46 H 0.059 0.941 47 H -0.009 1.009 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.177 20.861 10.865 27.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.060 4.060 3 C -0.198 4.198 4 C -0.064 4.064 5 C -0.164 4.164 6 C -0.388 4.388 7 S 0.492 5.508 8 C -0.367 4.367 9 C 0.373 3.627 10 O -0.400 6.400 11 N -0.325 5.325 12 C -0.062 4.062 13 C -0.040 4.040 14 C 0.008 3.992 15 H 0.110 0.890 16 O -0.347 6.347 17 C -0.003 4.003 18 N -0.314 5.314 19 C 0.017 3.983 20 C -0.369 4.369 21 H 0.086 0.914 22 C -0.202 4.202 23 N -0.559 5.559 24 Si 0.737 3.263 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.211 1.211 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.158 0.842 36 H 0.184 0.816 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.204 0.796 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.035 0.965 46 H 0.078 0.922 47 H 0.010 0.990 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.805 18.586 11.545 25.871 hybrid contribution 0.285 1.395 -0.421 1.485 sum -13.520 19.981 11.124 26.567 Atomic orbital electron populations 1.21807 0.93894 1.02356 1.01833 1.19860 0.96206 0.95679 0.94303 1.21811 1.01259 0.94727 1.01968 1.19225 0.96678 0.94645 0.95861 1.19711 1.03410 1.02492 0.90830 1.25226 1.06353 1.02796 1.04459 1.83450 1.42663 1.30233 0.94474 1.24406 1.09331 1.04639 0.98293 1.17049 0.80920 0.81666 0.83066 1.90864 1.59638 1.30276 1.59202 1.47654 1.17769 1.44437 1.22616 1.21837 0.96601 0.91414 0.96335 1.22413 0.99767 0.97450 0.84349 1.23240 0.87059 0.93831 0.95090 0.88980 1.86649 1.37820 1.63908 1.46304 1.21301 0.96092 0.90011 0.92927 1.43732 1.05776 0.99802 1.82137 1.20802 0.90244 0.88204 0.99054 1.19145 0.83717 1.00236 1.33795 0.91403 1.25052 0.97922 0.98173 0.99005 1.70054 1.36460 1.07898 1.41518 0.86310 0.84671 0.76742 0.78613 1.21132 1.21809 1.21107 0.92166 0.92267 0.92454 0.90488 0.92512 0.92165 0.92389 0.84223 0.81609 0.92967 0.91365 0.90003 0.90188 0.89274 0.79567 0.93755 0.93174 0.96484 0.92181 0.99015 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.00 37.16 0.33 -0.83 16 2 C -0.04 -0.38 3.13 -91.78 -0.29 -0.66 16 3 C -0.14 -1.02 9.08 37.16 0.34 -0.68 16 4 C -0.05 -0.53 4.72 -105.48 -0.50 -1.03 16 5 C -0.13 -1.16 9.15 -41.41 -0.38 -1.54 16 6 C -0.25 -2.13 10.92 29.18 0.32 -1.81 16 7 S 0.22 2.40 22.41 -107.50 -2.41 -0.01 16 8 C -0.25 -3.11 4.52 -36.79 -0.17 -3.28 16 9 C 0.59 9.01 6.39 -12.90 -0.08 8.92 16 10 O -0.52 -10.04 16.74 5.18 0.09 -9.95 16 11 N -0.59 -7.93 2.80 -183.16 -0.51 -8.44 16 12 C 0.08 0.83 10.02 59.85 0.60 1.43 16 13 C 0.08 1.16 5.08 -4.04 -0.02 1.14 16 14 C 0.07 1.27 3.48 -26.73 -0.09 1.18 16 15 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 16 O -0.54 -9.79 11.22 -35.23 -0.40 -10.18 16 17 C 0.13 2.54 5.37 -4.04 -0.02 2.52 16 18 N -0.59 -15.29 2.90 -181.13 -0.53 -15.81 16 19 C 0.16 4.24 8.99 59.84 0.54 4.77 16 20 C -0.24 -6.63 9.22 -15.06 -0.14 -6.77 16 21 H 0.07 1.81 7.53 -52.49 -0.40 1.42 16 22 C 0.00 -0.12 5.11 -17.43 -0.09 -0.21 16 23 N -0.91 -27.40 10.66 55.49 0.59 -26.81 16 24 Si 0.91 22.38 29.57 -169.99 -5.03 17.35 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.40 7.55 -51.93 -0.39 0.00 16 31 H 0.08 0.88 7.12 -51.93 -0.37 0.51 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.37 7.98 -51.93 -0.41 -0.05 16 35 H 0.14 0.93 7.72 -52.49 -0.41 0.53 16 36 H 0.17 0.99 8.06 -52.48 -0.42 0.56 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.69 6.29 -51.93 -0.33 0.36 16 39 H 0.08 0.80 6.83 -51.93 -0.35 0.45 16 40 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 41 H 0.09 1.31 7.50 -51.93 -0.39 0.92 16 42 H 0.36 5.18 8.80 45.56 0.40 5.58 16 43 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 44 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 45 H 0.02 0.46 7.84 -51.93 -0.41 0.06 16 46 H 0.06 1.71 6.68 -51.93 -0.35 1.36 16 47 H -0.01 -0.21 8.10 -51.93 -0.42 -0.63 16 48 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 401.15 15.07 6.05 6.05 Total: -1.00 -34.41 401.15 -8.96 -43.38 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.17 Total: 1.27 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 0.35 Total: 3.15 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.45 Total: -51.06 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.31 Total: -20.13 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.41 Total: -0.01 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.41 -8.96 -43.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734546030.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.639 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds