Wall clock time and date at job start Sat Apr 11 2020 06:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47137 * 2 1 4 4 C 1.50692 * 109.47283 * 120.00317 * 2 1 3 5 5 C 1.37474 * 123.35162 * 304.22584 * 4 2 1 6 6 C 1.33824 * 115.09958 * 180.27106 * 5 4 2 7 7 S 1.70615 * 110.95462 * 359.74919 * 6 5 4 8 8 C 1.36648 * 123.35562 * 124.02655 * 4 2 1 9 9 C 1.46585 * 125.45506 * 0.02562 * 8 4 2 10 10 O 1.21705 * 119.99807 * 273.49596 * 9 8 4 11 11 N 1.34771 * 120.00261 * 93.49776 * 9 8 4 12 12 C 1.46503 * 119.99793 * 5.00609 * 11 9 8 13 13 C 1.46499 * 120.00151 * 185.01010 * 11 9 8 14 14 C 1.53001 * 109.46950 * 269.99596 * 13 11 9 15 15 H 1.09003 * 109.46614 * 60.00546 * 14 13 11 16 16 O 1.42896 * 109.47225 * 300.00290 * 14 13 11 17 17 C 1.53004 * 109.46871 * 180.02562 * 14 13 11 18 18 N 1.46504 * 109.47061 * 185.00415 * 17 14 13 19 19 C 1.46496 * 120.00168 * 89.99780 * 18 17 14 20 20 C 1.36941 * 119.99491 * 270.00119 * 18 17 14 21 21 H 1.07996 * 120.00536 * 24.11273 * 20 18 17 22 22 C 1.38809 * 119.99392 * 204.10669 * 20 18 17 23 23 N 1.31615 * 120.00574 * 9.93685 * 22 20 18 24 24 Si 1.86806 * 119.99835 * 189.93331 * 22 20 18 25 25 H 1.48498 * 109.47309 * 60.00092 * 24 22 20 26 26 H 1.48496 * 109.47254 * 180.02562 * 24 22 20 27 27 H 1.48509 * 109.46903 * 300.00132 * 24 22 20 28 28 H 1.08997 * 109.47663 * 59.99537 * 1 2 3 29 29 H 1.09000 * 109.47358 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46958 * 299.99460 * 1 2 3 31 31 H 1.09000 * 109.46626 * 240.00137 * 2 1 3 32 32 H 1.09004 * 109.47273 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47320 * 299.99954 * 3 2 1 34 34 H 1.09000 * 109.47251 * 60.00520 * 3 2 1 35 35 H 1.07998 * 122.45354 * 359.97438 * 5 4 2 36 36 H 1.08008 * 124.51835 * 179.77003 * 6 5 4 37 37 H 1.08999 * 109.47250 * 266.97253 * 12 11 9 38 38 H 1.09001 * 109.46784 * 26.97418 * 12 11 9 39 39 H 1.09000 * 109.46967 * 146.97135 * 12 11 9 40 40 H 1.09004 * 109.47312 * 149.99930 * 13 11 9 41 41 H 1.09002 * 109.47211 * 30.00071 * 13 11 9 42 42 H 0.96701 * 113.99602 * 299.99715 * 16 14 13 43 43 H 1.08998 * 109.47312 * 304.99749 * 17 14 13 44 44 H 1.08993 * 109.47083 * 65.00173 * 17 14 13 45 45 H 1.08996 * 109.47292 * 85.75911 * 19 18 17 46 46 H 1.09003 * 109.47119 * 205.76013 * 19 18 17 47 47 H 1.08994 * 109.47126 * 325.75482 * 19 18 17 48 48 H 0.97003 * 120.00519 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2303 5 6 1.6753 -0.3522 2.5087 6 6 2.2231 -1.0925 3.4796 7 16 3.2299 -2.3058 2.8275 8 6 2.8850 -1.7774 1.1864 9 6 3.4298 -2.3807 -0.0334 10 8 2.8017 -3.2435 -0.6184 11 7 4.6262 -1.9800 -0.5070 12 6 5.4320 -1.0223 0.2544 13 6 5.1210 -2.5021 -1.7833 14 6 5.9333 -3.7743 -1.5334 15 1 5.2998 -4.5219 -1.0561 16 8 7.0398 -3.4731 -0.6808 17 6 6.4506 -4.3192 -2.8663 18 7 7.1261 -5.5996 -2.6413 19 6 6.3657 -6.8501 -2.7053 20 6 8.4683 -5.6273 -2.3710 21 1 8.9514 -4.7605 -1.9448 22 6 9.2078 -6.7696 -2.6448 23 7 8.6710 -7.7505 -3.3391 24 14 10.9651 -6.9147 -2.0281 25 1 10.9785 -6.8254 -0.5458 26 1 11.5320 -8.2204 -2.4509 27 1 11.7822 -5.8131 -2.5977 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8932 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.0057 0.4698 2.7146 36 1 2.0506 -0.9421 4.5352 37 1 5.2149 -0.0108 -0.0890 38 1 5.1906 -1.1060 1.3141 39 1 6.4900 -1.2376 0.1047 40 1 5.7545 -1.7544 -2.2607 41 1 4.2769 -2.7317 -2.4336 42 1 7.6471 -2.8134 -1.0428 43 1 5.6132 -4.4652 -3.5486 44 1 7.1537 -3.6088 -3.3008 45 1 6.3143 -7.1915 -3.7392 46 1 6.8600 -7.6074 -2.0968 47 1 5.3573 -6.6819 -2.3276 48 1 9.1877 -8.5489 -3.5301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734546030.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:43 Heat of formation + Delta-G solvation = -53.431013 kcal Electronic energy + Delta-G solvation = -28241.387509 eV Core-core repulsion = 24423.028084 eV Total energy + Delta-G solvation = -3818.359425 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.30303 -39.57396 -38.73188 -36.88861 -35.94877 -35.02611 -33.35389 -31.77593 -30.37569 -28.19334 -27.99508 -27.80391 -27.02419 -25.43306 -23.83519 -22.78590 -22.21367 -21.54690 -19.17812 -18.80665 -18.60047 -17.79856 -17.53518 -16.94165 -16.90153 -16.47005 -16.20447 -15.68923 -15.27266 -15.12944 -14.96549 -14.81668 -14.61651 -14.41637 -14.23199 -14.06234 -13.71793 -13.52281 -13.33607 -13.25235 -13.07031 -12.93110 -12.77926 -12.61368 -12.52461 -12.37038 -12.26623 -12.13344 -12.05824 -11.90778 -11.84810 -11.74908 -11.62905 -11.34700 -11.13936 -10.55927 -9.73891 -9.65342 -9.42099 -8.66407 -7.79861 -5.27038 -0.20949 0.28164 1.00916 1.46750 1.51145 1.56820 1.60982 1.67491 2.01994 2.53950 3.35230 3.49647 3.52865 3.74486 3.81861 3.91706 4.03041 4.15667 4.24809 4.26521 4.28359 4.45472 4.49450 4.52921 4.60384 4.63804 4.73563 4.79622 4.80203 4.81391 4.87513 4.94869 4.98472 5.05660 5.13602 5.18831 5.24116 5.34436 5.38419 5.42669 5.45497 5.50280 5.59278 5.71221 6.23525 6.37583 6.96892 7.01865 7.18365 7.88013 8.35026 9.26201 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.002672 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.275545 B =10475.732567 C =10859.905916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C -0.134 4.134 4 C -0.038 4.038 5 C -0.139 4.139 6 C -0.227 4.227 7 S 0.195 5.805 8 C -0.284 4.284 9 C 0.585 3.415 10 O -0.578 6.578 11 N -0.590 5.590 12 C 0.078 3.922 13 C 0.093 3.907 14 C 0.091 3.909 15 H 0.049 0.951 16 O -0.558 6.558 17 C 0.123 3.877 18 N -0.612 5.612 19 C 0.177 3.823 20 C -0.240 4.240 21 H 0.080 0.920 22 C -0.066 4.066 23 N -0.949 5.949 24 Si 0.973 3.027 25 H -0.283 1.283 26 H -0.299 1.299 27 H -0.269 1.269 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.170 0.830 36 H 0.198 0.802 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.078 0.922 42 H 0.377 0.623 43 H 0.050 0.950 44 H 0.069 0.931 45 H -0.002 1.002 46 H 0.030 0.970 47 H 0.008 0.992 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.156 24.652 12.478 31.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.064 4.064 3 C -0.191 4.191 4 C -0.052 4.052 5 C -0.169 4.169 6 C -0.364 4.364 7 S 0.463 5.537 8 C -0.403 4.403 9 C 0.372 3.628 10 O -0.459 6.459 11 N -0.320 5.320 12 C -0.064 4.064 13 C -0.030 4.030 14 C 0.028 3.972 15 H 0.067 0.933 16 O -0.364 6.364 17 C -0.004 4.004 18 N -0.335 5.335 19 C 0.032 3.968 20 C -0.371 4.371 21 H 0.098 0.902 22 C -0.259 4.259 23 N -0.597 5.597 24 Si 0.801 3.199 25 H -0.210 1.210 26 H -0.226 1.226 27 H -0.195 1.195 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.187 0.813 36 H 0.215 0.785 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.137 0.863 41 H 0.097 0.903 42 H 0.225 0.775 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.016 0.984 46 H 0.049 0.951 47 H 0.026 0.974 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.765 22.463 13.174 29.456 hybrid contribution 0.201 0.305 -0.874 0.947 sum -13.565 22.768 12.300 29.218 Atomic orbital electron populations 1.21798 0.92969 1.01456 1.03397 1.19915 0.96954 0.96766 0.92718 1.21775 1.01090 0.93038 1.03237 1.19543 0.95014 0.93514 0.97164 1.19962 1.03841 1.03356 0.89755 1.25574 1.04226 1.00717 1.05894 1.83527 1.44165 1.31894 0.94064 1.24208 1.11872 1.06458 0.97810 1.17504 0.80996 0.80866 0.83482 1.90819 1.61230 1.32792 1.61044 1.47745 1.17549 1.44282 1.22444 1.22040 0.96367 0.91794 0.96175 1.22222 0.99332 0.96577 0.84910 1.22721 0.86946 0.94741 0.92746 0.93312 1.86606 1.38316 1.64854 1.46606 1.21526 0.96348 0.88105 0.94432 1.43983 1.05701 1.01254 1.82543 1.20492 0.90800 0.88275 0.97267 1.19548 0.84525 1.00381 1.32611 0.90216 1.25883 1.02000 0.98222 0.99835 1.70233 1.37818 1.08325 1.43319 0.85255 0.80187 0.76596 0.77859 1.20964 1.22584 1.19463 0.91077 0.94376 0.90440 0.93299 0.92741 0.91271 0.90750 0.81308 0.78527 0.90438 0.91287 0.89235 0.86302 0.90327 0.77452 0.93177 0.91296 0.98401 0.95138 0.97360 0.94557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.00 71.98 0.65 -1.41 16 2 C -0.04 -0.75 3.13 -11.54 -0.04 -0.78 16 3 C -0.13 -1.57 9.08 71.98 0.65 -0.91 16 4 C -0.04 -0.74 4.72 -20.42 -0.10 -0.83 16 5 C -0.14 -1.99 9.15 21.09 0.19 -1.80 16 6 C -0.23 -3.19 10.92 66.82 0.73 -2.46 16 7 S 0.20 4.06 22.41 -56.49 -1.27 2.80 16 8 C -0.28 -7.10 4.52 24.08 0.11 -6.99 16 9 C 0.58 18.38 6.39 86.42 0.55 18.93 16 10 O -0.58 -23.51 16.74 -4.37 -0.07 -23.59 16 11 N -0.59 -15.45 2.80 -851.60 -2.38 -17.83 16 12 C 0.08 1.45 10.02 127.77 1.28 2.73 16 13 C 0.09 2.51 5.08 86.38 0.44 2.95 16 14 C 0.09 3.26 3.48 30.60 0.11 3.36 16 15 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 16 O -0.56 -19.43 11.22 -148.98 -1.67 -21.10 16 17 C 0.12 4.92 5.37 86.38 0.46 5.39 16 18 N -0.61 -31.92 2.90 -726.96 -2.11 -34.03 16 19 C 0.18 9.63 8.99 127.77 1.15 10.78 16 20 C -0.24 -13.31 9.22 84.03 0.77 -12.53 16 21 H 0.08 4.14 7.53 -2.91 -0.02 4.12 16 22 C -0.07 -3.80 5.11 84.86 0.43 -3.37 16 23 N -0.95 -58.45 10.66 21.65 0.23 -58.22 16 24 Si 0.97 46.26 29.57 68.60 2.03 48.29 16 25 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 26 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.83 7.55 -2.39 -0.02 0.81 16 31 H 0.05 1.13 7.12 -2.39 -0.02 1.11 16 32 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.64 7.98 -2.39 -0.02 0.62 16 35 H 0.17 1.45 7.72 -2.91 -0.02 1.43 16 36 H 0.20 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.30 6.29 -2.39 -0.02 1.28 16 39 H 0.09 1.52 6.83 -2.39 -0.02 1.50 16 40 H 0.12 2.29 8.07 -2.39 -0.02 2.27 16 41 H 0.08 2.33 7.50 -2.39 -0.02 2.31 16 42 H 0.38 9.94 8.80 -74.06 -0.65 9.29 16 43 H 0.05 1.94 8.07 -2.39 -0.02 1.92 16 44 H 0.07 2.50 8.04 -2.39 -0.02 2.48 16 45 H 0.00 -0.13 7.84 -2.39 -0.02 -0.15 16 46 H 0.03 1.79 6.68 -2.39 -0.02 1.78 16 47 H 0.01 0.40 8.10 -2.39 -0.02 0.38 16 48 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -78.02 401.15 2.46 -75.57 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.30 Total: 15.07 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 7.40 Total: 13.04 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -4.26 Total: -110.08 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -1.75 Total: -44.69 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.27 Total: 2.80 kcal Total: -78.02 2.46 -75.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734546030.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.137 kcal (2) G-P(sol) polarization free energy of solvation -78.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds