Wall clock time and date at job start Sat Apr 11 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47060 * 2 1 4 4 C 1.32991 * 120.00366 * 125.38951 * 3 2 1 5 5 C 1.50701 * 119.99838 * 6.05240 * 4 3 2 6 6 C 1.47100 * 120.00166 * 186.05917 * 4 3 2 7 7 O 1.21619 * 119.99594 * 359.97438 * 6 4 3 8 8 N 1.34776 * 120.00069 * 179.97438 * 6 4 3 9 9 C 1.47065 * 136.05461 * 179.97438 * 8 6 4 10 10 C 1.53501 * 87.98152 * 152.84654 * 9 8 6 11 11 C 1.53000 * 114.20385 * 139.65833 * 10 9 8 12 12 H 1.09006 * 109.46836 * 299.99685 * 11 10 9 13 13 C 1.52996 * 109.47581 * 59.99852 * 11 10 9 14 14 N 1.46503 * 109.47337 * 180.02562 * 11 10 9 15 15 C 1.34769 * 120.00386 * 154.99369 * 14 11 10 16 16 O 1.21279 * 120.00229 * 0.02562 * 15 14 11 17 17 C 1.50703 * 120.00010 * 179.97438 * 15 14 11 18 18 S 1.81000 * 109.47236 * 180.02562 * 17 15 14 19 19 C 1.76196 * 100.00344 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99594 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00249 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99868 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99977 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47160 * 59.99815 * 23 21 19 25 25 H 1.48496 * 109.46761 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46700 * 299.99791 * 23 21 19 27 27 C 1.47065 * 136.05838 * 359.95157 * 8 6 4 28 28 H 1.09000 * 109.47178 * 300.00108 * 1 2 3 29 29 H 1.08994 * 109.46757 * 60.00572 * 1 2 3 30 30 H 1.08999 * 109.46805 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47428 * 239.99586 * 2 1 3 32 32 H 1.09007 * 109.47083 * 119.99533 * 2 1 3 33 33 H 1.08005 * 119.99665 * 305.38587 * 3 2 1 34 34 H 1.08992 * 109.47731 * 264.89107 * 5 4 3 35 35 H 1.08999 * 109.47019 * 24.89325 * 5 4 3 36 36 H 1.09007 * 109.46945 * 144.88748 * 5 4 3 37 37 H 1.08995 * 113.47497 * 267.62901 * 9 8 6 38 38 H 1.09008 * 113.46956 * 38.07193 * 9 8 6 39 39 H 1.09000 * 114.20749 * 272.48224 * 10 9 8 40 40 H 1.09000 * 109.46943 * 300.00241 * 13 11 10 41 41 H 1.09008 * 109.46663 * 59.99950 * 13 11 10 42 42 H 1.08998 * 109.47405 * 180.02562 * 13 11 10 43 43 H 0.97000 * 119.99673 * 334.99879 * 14 11 10 44 44 H 1.08994 * 109.47642 * 300.00617 * 17 15 14 45 45 H 1.09004 * 109.46968 * 60.00882 * 17 15 14 46 46 H 0.97002 * 119.99635 * 180.02562 * 22 21 19 47 47 H 1.09006 * 113.46651 * 321.93254 * 27 8 6 48 48 H 1.09000 * 113.46787 * 92.31297 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8828 1.8255 0.9389 5 6 3.4502 0.8325 1.9202 6 6 3.2697 3.2424 1.0196 7 8 2.8120 4.0438 0.2274 8 7 4.1312 3.6526 1.9715 9 6 4.7416 4.9306 2.3675 10 6 4.8522 4.3737 3.7936 11 6 6.1600 4.7263 4.5051 12 1 7.0010 4.3254 3.9392 13 6 6.2918 6.2472 4.6060 14 7 6.1561 4.1458 5.8502 15 6 7.3214 3.8742 6.4704 16 8 8.3734 4.1107 5.9152 17 6 7.3173 3.2775 7.8543 18 16 9.0221 3.0323 8.4107 19 6 8.7275 2.3446 10.0059 20 1 7.7151 2.1985 10.3523 21 6 9.7965 1.9916 10.8177 22 7 11.0305 2.1701 10.3956 23 14 9.4841 1.2632 12.5093 24 1 8.7081 0.0048 12.3707 25 1 10.7817 0.9748 13.1713 26 1 8.7144 2.2316 13.3307 27 6 4.8742 3.0193 3.0713 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.7016 2.1105 -0.7626 34 1 2.8507 0.8380 2.8305 35 1 3.4325 -0.1644 1.4796 36 1 4.4779 1.1054 2.1603 37 1 5.7075 5.1146 1.8972 38 1 4.0633 5.7799 2.2846 39 1 3.9669 4.5386 4.4078 40 1 6.2949 6.6788 3.6050 41 1 5.4507 6.6480 5.1719 42 1 7.2237 6.4984 5.1124 43 1 5.3147 3.9568 6.2944 44 1 6.8054 3.9529 8.5397 45 1 6.7996 2.3184 7.8349 46 1 11.7776 1.9231 10.9629 47 1 4.3086 2.2430 3.5868 48 1 5.8750 2.6935 2.7880 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734871128.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:12 Heat of formation + Delta-G solvation = -27.543253 kcal Electronic energy + Delta-G solvation = -26425.457893 eV Core-core repulsion = 22608.221046 eV Total energy + Delta-G solvation = -3817.236847 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.10646 -39.40415 -38.41001 -36.45151 -35.10142 -32.49641 -32.44891 -31.50067 -29.31002 -28.47781 -27.69411 -26.19081 -25.50318 -24.81148 -23.54263 -21.18377 -20.52531 -19.89416 -18.66786 -17.88437 -17.03376 -16.77518 -16.72793 -16.36905 -15.43392 -15.04327 -14.83339 -14.79727 -14.74940 -14.27838 -14.06444 -13.90786 -13.67802 -13.44200 -13.22985 -13.01245 -12.93505 -12.76415 -12.61007 -12.55750 -12.50194 -12.18975 -11.99119 -11.81829 -11.68822 -11.26826 -11.09352 -11.06477 -11.05587 -10.84385 -10.76593 -10.11147 -9.84694 -9.48044 -9.43328 -9.08943 -9.02474 -8.94578 -8.26863 -6.52659 -6.23879 -3.94679 0.99319 2.45570 2.91298 2.98648 3.04469 3.21576 3.25336 3.28067 3.59373 3.91530 4.02270 4.18334 4.41041 4.46332 4.57948 4.63108 4.74158 4.80641 4.82122 4.89930 5.02657 5.07910 5.11212 5.11527 5.17004 5.17522 5.25004 5.25832 5.32615 5.37666 5.43867 5.51653 5.53334 5.58973 5.64523 5.71191 5.73144 5.85330 5.95528 6.09642 6.10573 6.13956 6.16116 6.59231 7.35875 7.56902 7.65520 7.84365 8.32594 8.56706 9.21417 10.83409 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.001938 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.137925 B =14442.409968 C =15846.016937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.070 4.070 4 C -0.183 4.183 5 C -0.127 4.127 6 C 0.584 3.416 7 O -0.547 6.547 8 N -0.643 5.643 9 C 0.116 3.884 10 C -0.133 4.133 11 C 0.157 3.843 12 H 0.093 0.907 13 C -0.165 4.165 14 N -0.734 5.734 15 C 0.534 3.466 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.100 3.900 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.398 0.602 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.088 0.912 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.804 -0.949 -17.926 26.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.089 4.089 4 C -0.185 4.185 5 C -0.183 4.183 6 C 0.376 3.624 7 O -0.426 6.426 8 N -0.377 5.377 9 C -0.007 4.007 10 C -0.153 4.153 11 C 0.051 3.949 12 H 0.111 0.889 13 C -0.223 4.223 14 N -0.389 5.389 15 C 0.320 3.680 16 O -0.390 6.390 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.023 4.023 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.143 0.857 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.232 0.768 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.106 0.894 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.228 -0.223 -19.411 26.629 hybrid contribution -1.759 -0.781 1.961 2.748 sum -19.987 -1.003 -17.450 26.551 Atomic orbital electron populations 1.21688 0.94273 1.02098 1.02381 1.20898 0.96697 0.93511 1.03541 1.23602 0.92330 0.97475 0.95542 1.21318 1.02798 0.93133 1.01289 1.21153 1.01295 0.97824 0.98056 1.17952 0.77756 0.88335 0.78344 1.90793 1.55533 1.55701 1.40527 1.49398 1.43561 1.12811 1.31969 1.22941 0.98372 0.88290 0.91129 1.23311 0.99487 0.96812 0.95681 1.20751 0.96212 0.94074 0.83833 0.88915 1.22184 1.03062 0.94807 1.02253 1.46063 1.08935 1.66516 1.17347 1.20300 0.83248 0.77128 0.87305 1.90705 1.30830 1.51197 1.66303 1.23539 1.08514 1.03123 0.95310 1.85396 0.97273 1.82135 1.18507 1.22823 0.95447 1.48432 1.01784 0.90987 1.24989 0.94438 0.95324 0.98805 1.70006 0.98087 1.44937 1.37225 0.86230 0.77696 0.79419 0.82196 1.19940 1.20814 1.19948 1.23371 0.96957 0.96910 0.85053 0.92430 0.92350 0.92044 0.90170 0.90171 0.85657 0.91065 0.90761 0.90740 0.89169 0.89955 0.87112 0.91763 0.92343 0.91330 0.76828 0.89244 0.89239 0.92116 0.89384 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.89 37.16 0.37 -0.37 16 2 C -0.11 -0.60 6.01 -27.88 -0.17 -0.77 16 3 C -0.07 -0.56 9.08 -36.13 -0.33 -0.89 16 4 C -0.18 -1.64 5.99 -102.85 -0.62 -2.25 16 5 C -0.13 -0.83 7.74 36.01 0.28 -0.55 16 6 C 0.58 6.81 8.00 -12.67 -0.10 6.71 16 7 O -0.55 -8.32 17.00 5.26 0.09 -8.23 16 8 N -0.64 -6.08 3.68 -186.61 -0.69 -6.77 16 9 C 0.12 0.93 7.27 -8.50 -0.06 0.86 16 10 C -0.13 -0.93 3.66 -90.10 -0.33 -1.26 16 11 C 0.16 1.48 2.47 -67.93 -0.17 1.32 16 12 H 0.09 1.04 7.33 -51.93 -0.38 0.66 16 13 C -0.16 -1.54 9.29 37.16 0.35 -1.19 16 14 N -0.73 -8.20 5.08 -53.80 -0.27 -8.47 16 15 C 0.53 9.00 7.81 -10.99 -0.09 8.91 16 16 O -0.52 -10.83 15.52 5.56 0.09 -10.74 16 17 C -0.15 -2.91 6.16 36.01 0.22 -2.68 16 18 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 19 C -0.54 -14.91 9.50 30.94 0.29 -14.62 16 20 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.72 13.22 55.49 0.73 -24.98 16 23 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.10 0.73 5.70 -8.50 -0.05 0.68 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.40 5.57 -51.93 -0.29 0.11 16 33 H 0.13 1.13 7.51 -52.48 -0.39 0.74 16 34 H 0.07 0.42 7.91 -51.93 -0.41 0.01 16 35 H 0.07 0.40 6.10 -51.93 -0.32 0.09 16 36 H 0.07 0.49 5.37 -51.92 -0.28 0.21 16 37 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.49 7.48 -51.93 -0.39 0.10 16 41 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.40 3.32 8.60 -40.82 -0.35 2.97 16 44 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 45 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 46 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.09 0.54 6.24 -51.93 -0.32 0.22 16 48 H 0.09 0.68 7.93 -51.93 -0.41 0.26 16 LS Contribution 405.70 15.07 6.11 6.11 Total: -1.00 -36.07 405.70 -9.41 -45.48 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.74 Total: -0.44 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -0.50 Total: -4.14 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.23 Total: -40.23 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.18 Total: -18.97 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.07 -9.41 -45.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734871128.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.937 kcal (2) G-P(sol) polarization free energy of solvation -36.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds