Wall clock time and date at job start Sat Apr 11 2020 06:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47060 * 2 1 4 4 C 1.32991 * 120.00366 * 125.38951 * 3 2 1 5 5 C 1.50701 * 119.99838 * 6.05240 * 4 3 2 6 6 C 1.47100 * 120.00166 * 186.05917 * 4 3 2 7 7 O 1.21619 * 119.99594 * 359.97438 * 6 4 3 8 8 N 1.34776 * 120.00069 * 179.97438 * 6 4 3 9 9 C 1.47065 * 136.05461 * 179.97438 * 8 6 4 10 10 C 1.53501 * 87.98152 * 152.84654 * 9 8 6 11 11 C 1.53000 * 114.20385 * 139.65833 * 10 9 8 12 12 H 1.09006 * 109.46836 * 299.99685 * 11 10 9 13 13 C 1.52996 * 109.47581 * 59.99852 * 11 10 9 14 14 N 1.46503 * 109.47337 * 180.02562 * 11 10 9 15 15 C 1.34769 * 120.00386 * 154.99369 * 14 11 10 16 16 O 1.21279 * 120.00229 * 0.02562 * 15 14 11 17 17 C 1.50703 * 120.00010 * 179.97438 * 15 14 11 18 18 S 1.81000 * 109.47236 * 180.02562 * 17 15 14 19 19 C 1.76196 * 100.00344 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99594 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00249 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99868 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99977 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47160 * 59.99815 * 23 21 19 25 25 H 1.48496 * 109.46761 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46700 * 299.99791 * 23 21 19 27 27 C 1.47065 * 136.05838 * 359.95157 * 8 6 4 28 28 H 1.09000 * 109.47178 * 300.00108 * 1 2 3 29 29 H 1.08994 * 109.46757 * 60.00572 * 1 2 3 30 30 H 1.08999 * 109.46805 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47428 * 239.99586 * 2 1 3 32 32 H 1.09007 * 109.47083 * 119.99533 * 2 1 3 33 33 H 1.08005 * 119.99665 * 305.38587 * 3 2 1 34 34 H 1.08992 * 109.47731 * 264.89107 * 5 4 3 35 35 H 1.08999 * 109.47019 * 24.89325 * 5 4 3 36 36 H 1.09007 * 109.46945 * 144.88748 * 5 4 3 37 37 H 1.08995 * 113.47497 * 267.62901 * 9 8 6 38 38 H 1.09008 * 113.46956 * 38.07193 * 9 8 6 39 39 H 1.09000 * 114.20749 * 272.48224 * 10 9 8 40 40 H 1.09000 * 109.46943 * 300.00241 * 13 11 10 41 41 H 1.09008 * 109.46663 * 59.99950 * 13 11 10 42 42 H 1.08998 * 109.47405 * 180.02562 * 13 11 10 43 43 H 0.97000 * 119.99673 * 334.99879 * 14 11 10 44 44 H 1.08994 * 109.47642 * 300.00617 * 17 15 14 45 45 H 1.09004 * 109.46968 * 60.00882 * 17 15 14 46 46 H 0.97002 * 119.99635 * 180.02562 * 22 21 19 47 47 H 1.09006 * 113.46651 * 321.93254 * 27 8 6 48 48 H 1.09000 * 113.46787 * 92.31297 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8828 1.8255 0.9389 5 6 3.4502 0.8325 1.9202 6 6 3.2697 3.2424 1.0196 7 8 2.8120 4.0438 0.2274 8 7 4.1312 3.6526 1.9715 9 6 4.7416 4.9306 2.3675 10 6 4.8522 4.3737 3.7936 11 6 6.1600 4.7263 4.5051 12 1 7.0010 4.3254 3.9392 13 6 6.2918 6.2472 4.6060 14 7 6.1561 4.1458 5.8502 15 6 7.3214 3.8742 6.4704 16 8 8.3734 4.1107 5.9152 17 6 7.3173 3.2775 7.8543 18 16 9.0221 3.0323 8.4107 19 6 8.7275 2.3446 10.0059 20 1 7.7151 2.1985 10.3523 21 6 9.7965 1.9916 10.8177 22 7 11.0305 2.1701 10.3956 23 14 9.4841 1.2632 12.5093 24 1 8.7081 0.0048 12.3707 25 1 10.7817 0.9748 13.1713 26 1 8.7144 2.2316 13.3307 27 6 4.8742 3.0193 3.0713 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.7016 2.1105 -0.7626 34 1 2.8507 0.8380 2.8305 35 1 3.4325 -0.1644 1.4796 36 1 4.4779 1.1054 2.1603 37 1 5.7075 5.1146 1.8972 38 1 4.0633 5.7799 2.2846 39 1 3.9669 4.5386 4.4078 40 1 6.2949 6.6788 3.6050 41 1 5.4507 6.6480 5.1719 42 1 7.2237 6.4984 5.1124 43 1 5.3147 3.9568 6.2944 44 1 6.8054 3.9529 8.5397 45 1 6.7996 2.3184 7.8349 46 1 11.7776 1.9231 10.9629 47 1 4.3086 2.2430 3.5868 48 1 5.8750 2.6935 2.7880 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734871128.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:11 Heat of formation + Delta-G solvation = -51.978514 kcal Electronic energy + Delta-G solvation = -26426.517485 eV Core-core repulsion = 22608.221046 eV Total energy + Delta-G solvation = -3818.296440 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.86867 -40.57059 -39.33260 -37.08629 -36.17209 -34.55128 -33.17910 -32.46167 -30.34621 -29.51653 -28.25741 -27.62633 -26.82073 -25.48047 -24.23167 -22.00466 -21.59753 -20.69727 -19.75453 -19.31380 -17.94421 -17.72948 -17.56349 -17.45927 -16.84780 -16.37471 -16.34520 -15.91822 -15.36367 -15.29785 -14.94352 -14.77323 -14.59076 -14.52502 -14.25539 -14.01672 -13.91698 -13.50239 -13.48633 -13.25258 -13.17457 -13.12550 -12.99410 -12.84480 -12.78560 -12.71460 -12.55629 -12.22647 -11.87465 -11.72828 -11.70961 -11.48909 -11.09985 -10.94665 -10.82602 -10.22510 -10.16020 -10.05140 -9.70367 -8.61955 -8.31570 -6.08680 0.29960 1.30476 1.45704 1.49791 1.59133 1.69510 1.75565 2.14426 2.28245 2.33653 3.02571 3.16270 3.37791 3.38879 3.71538 3.90372 3.94180 4.07774 4.11703 4.15177 4.25569 4.28984 4.36005 4.41484 4.43824 4.46960 4.50411 4.53806 4.58597 4.65658 4.70513 4.79020 4.80078 4.85310 5.01179 5.03870 5.04201 5.13253 5.17792 5.32160 5.35259 5.44900 5.52249 5.56895 5.59797 6.22642 6.58819 6.60864 7.01462 7.10034 7.34226 8.77091 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.001938 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.137925 B =14442.409968 C =15846.016937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.065 4.065 4 C -0.197 4.197 5 C -0.122 4.122 6 C 0.573 3.427 7 O -0.596 6.596 8 N -0.644 5.644 9 C 0.109 3.891 10 C -0.112 4.112 11 C 0.160 3.840 12 H 0.076 0.924 13 C -0.162 4.162 14 N -0.706 5.706 15 C 0.538 3.462 16 O -0.564 6.564 17 C -0.131 4.131 18 S -0.152 6.152 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.996 3.004 24 H -0.261 1.261 25 H -0.281 1.281 26 H -0.263 1.263 27 C 0.099 3.901 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.036 0.964 43 H 0.417 0.583 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.270 0.730 47 H 0.107 0.893 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.321 -2.236 -16.928 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.142 4.142 3 C -0.085 4.085 4 C -0.200 4.200 5 C -0.178 4.178 6 C 0.366 3.634 7 O -0.479 6.479 8 N -0.377 5.377 9 C -0.014 4.014 10 C -0.131 4.131 11 C 0.055 3.945 12 H 0.094 0.906 13 C -0.220 4.220 14 N -0.360 5.360 15 C 0.324 3.676 16 O -0.442 6.442 17 C -0.282 4.282 18 S 0.075 5.925 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.818 3.182 24 H -0.186 1.186 25 H -0.206 1.206 26 H -0.188 1.188 27 C -0.023 4.023 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.150 0.850 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.254 0.746 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.079 0.921 47 H 0.125 0.875 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.792 -1.510 -18.398 27.804 hybrid contribution -1.062 -0.305 1.522 1.880 sum -21.854 -1.816 -16.877 27.671 Atomic orbital electron populations 1.21697 0.93877 1.02877 1.01984 1.20945 0.96919 0.91746 1.04605 1.23766 0.91591 0.98604 0.94541 1.21431 1.03671 0.92279 1.02627 1.21167 1.01160 0.97643 0.97878 1.18478 0.77663 0.89180 0.78029 1.90757 1.57530 1.57103 1.42484 1.49474 1.42827 1.13774 1.31620 1.23083 0.98562 0.88110 0.91663 1.23145 0.98602 0.96393 0.94950 1.20806 0.97093 0.94083 0.82542 0.90569 1.22153 1.01983 0.94606 1.03288 1.45766 1.07994 1.64604 1.17645 1.19970 0.84020 0.77010 0.86628 1.90702 1.32902 1.53490 1.67142 1.23389 1.03021 1.05012 0.96772 1.85579 1.04904 1.82578 1.19468 1.23180 0.96079 1.48115 1.01969 0.89865 1.26103 0.94048 0.95642 1.03376 1.70179 0.99225 1.46368 1.38998 0.85038 0.77749 0.78949 0.76484 1.18573 1.20626 1.18758 1.23519 0.97033 0.97448 0.84257 0.93018 0.92636 0.90642 0.89037 0.89037 0.87435 0.89988 0.89412 0.90777 0.88752 0.89865 0.85017 0.89965 0.90748 0.94518 0.74555 0.87398 0.86989 0.92090 0.87513 0.88875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 71.98 0.71 -0.52 16 2 C -0.11 -0.96 6.01 29.85 0.18 -0.78 16 3 C -0.07 -1.01 9.08 24.52 0.22 -0.78 16 4 C -0.20 -3.35 5.99 -18.70 -0.11 -3.46 16 5 C -0.12 -1.31 7.74 71.24 0.55 -0.76 16 6 C 0.57 13.21 8.00 86.57 0.69 13.90 16 7 O -0.60 -18.66 17.00 -4.09 -0.07 -18.73 16 8 N -0.64 -11.34 3.68 -862.57 -3.18 -14.52 16 9 C 0.11 1.57 7.27 83.18 0.60 2.17 16 10 C -0.11 -1.25 3.66 -10.45 -0.04 -1.29 16 11 C 0.16 2.71 2.47 44.99 0.11 2.82 16 12 H 0.08 1.63 7.33 -2.38 -0.02 1.62 16 13 C -0.16 -2.77 9.29 71.98 0.67 -2.10 16 14 N -0.71 -13.98 5.08 -442.54 -2.25 -16.22 16 15 C 0.54 17.52 7.81 87.66 0.68 18.21 16 16 O -0.56 -23.99 15.52 -3.03 -0.05 -24.04 16 17 C -0.13 -4.74 6.16 71.24 0.44 -4.30 16 18 S -0.15 -8.14 20.57 -56.49 -1.16 -9.30 16 19 C -0.55 -30.22 9.50 67.95 0.65 -29.58 16 20 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 21 C 0.01 0.73 5.49 84.86 0.47 1.19 16 22 N -0.91 -55.07 13.22 21.65 0.29 -54.78 16 23 Si 1.00 42.56 29.55 68.60 2.03 44.58 16 24 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 27 C 0.10 1.20 5.70 83.19 0.47 1.68 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 0.65 5.57 -2.38 -0.01 0.64 16 33 H 0.11 2.03 7.51 -2.91 -0.02 2.01 16 34 H 0.08 0.70 7.91 -2.39 -0.02 0.68 16 35 H 0.09 0.70 6.10 -2.39 -0.01 0.69 16 36 H 0.07 0.79 5.37 -2.38 -0.01 0.78 16 37 H 0.09 1.29 8.10 -2.39 -0.02 1.28 16 38 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.11 7.48 -2.39 -0.02 1.10 16 41 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.42 5.29 8.60 -92.71 -0.80 4.49 16 44 H 0.11 3.52 8.14 -2.40 -0.02 3.50 16 45 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 46 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 47 H 0.11 0.94 6.24 -2.38 -0.01 0.93 16 48 H 0.09 1.18 7.93 -2.39 -0.02 1.16 16 Total: -1.00 -82.35 405.70 2.08 -80.27 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.17 Total: 16.35 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 6.30 Total: -3.61 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -5.14 Total: -85.52 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -0.12 Total: -42.77 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.16 Total: -9.30 kcal Total: -82.35 2.08 -80.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734871128.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.292 kcal (2) G-P(sol) polarization free energy of solvation -82.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds