Wall clock time and date at job start Sat Apr 11 2020 06:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47029 * 2 1 4 4 C 1.32993 * 120.00310 * 125.40535 * 3 2 1 5 5 C 1.50697 * 119.99520 * 5.41101 * 4 3 2 6 6 C 1.47095 * 120.00166 * 185.41036 * 4 3 2 7 7 O 1.21609 * 119.99997 * 0.02562 * 6 4 3 8 8 N 1.34776 * 120.00028 * 180.02562 * 6 4 3 9 9 C 1.46498 * 120.00102 * 180.02562 * 8 6 4 10 10 H 1.08995 * 110.64419 * 36.67910 * 9 8 6 11 11 C 1.55159 * 110.71589 * 273.54126 * 9 8 6 12 12 C 1.54908 * 101.61566 * 205.93461 * 11 9 8 13 13 N 1.47529 * 104.77931 * 37.01156 * 12 11 9 14 14 C 1.34782 * 125.63700 * 155.84559 * 13 12 11 15 15 O 1.21273 * 119.99824 * 180.02562 * 14 13 12 16 16 C 1.50708 * 119.99778 * 0.03622 * 14 13 12 17 17 S 1.80994 * 109.46920 * 180.02562 * 16 14 13 18 18 C 1.76203 * 100.00059 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99800 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00023 * 180.02562 * 18 17 16 21 21 N 1.31629 * 119.99826 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00003 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46903 * 90.00464 * 22 20 18 24 24 H 1.48499 * 109.46994 * 210.00393 * 22 20 18 25 25 H 1.48504 * 109.47176 * 330.00590 * 22 20 18 26 26 C 1.47016 * 108.71709 * 335.87487 * 13 12 11 27 27 H 1.09002 * 109.88494 * 120.47523 * 26 13 12 28 28 C 1.53002 * 110.01336 * 241.57134 * 26 13 12 29 29 H 1.09007 * 109.46689 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47288 * 300.00201 * 1 2 3 31 31 H 1.09007 * 109.47020 * 60.00616 * 1 2 3 32 32 H 1.08997 * 109.47513 * 239.99442 * 2 1 3 33 33 H 1.08998 * 109.47096 * 119.99670 * 2 1 3 34 34 H 1.08005 * 119.99696 * 305.40745 * 3 2 1 35 35 H 1.09003 * 109.47037 * 174.78100 * 5 4 3 36 36 H 1.08998 * 109.47685 * 294.78381 * 5 4 3 37 37 H 1.09002 * 109.47544 * 54.78837 * 5 4 3 38 38 H 0.97003 * 119.99496 * 359.97438 * 8 6 4 39 39 H 1.08999 * 111.00840 * 324.03344 * 11 9 8 40 40 H 1.09003 * 111.00241 * 87.85074 * 11 9 8 41 41 H 1.09003 * 110.36622 * 155.86868 * 12 11 9 42 42 H 1.08996 * 110.37094 * 278.19081 * 12 11 9 43 43 H 1.09001 * 109.47007 * 299.99969 * 16 14 13 44 44 H 1.08996 * 109.47152 * 60.00051 * 16 14 13 45 45 H 0.96997 * 119.99780 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.47115 * 177.88454 * 28 26 13 47 47 H 1.08994 * 109.46935 * 297.88813 * 28 26 13 48 48 H 1.09004 * 109.46756 * 57.88439 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8831 1.8254 0.9387 5 6 3.4395 0.8348 1.9288 6 6 3.2810 3.2397 1.0106 7 8 2.8316 4.0391 0.2119 8 7 4.1436 3.6496 1.9616 9 6 4.5394 5.0583 2.0336 10 1 3.6995 5.7067 1.7842 11 6 5.7453 5.3380 1.0981 12 6 6.3984 6.5613 1.7885 13 7 6.2398 6.3073 3.2331 14 6 7.0135 6.8202 4.2103 15 8 6.7907 6.5416 5.3693 16 6 8.1554 7.7402 3.8624 17 16 8.9977 8.2563 5.3790 18 6 10.2487 9.2928 4.6967 19 1 10.3074 9.4363 3.6279 20 6 11.1593 9.9240 5.5327 21 7 12.0935 10.6987 5.0230 22 14 11.0581 9.6753 7.3814 23 1 11.8887 8.5071 7.7698 24 1 11.5590 10.8905 8.0724 25 1 9.6463 9.4305 7.7714 26 6 5.0986 5.4016 3.4304 27 1 5.4296 4.4918 3.9311 28 6 4.0201 6.0928 4.2671 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.7014 2.1106 -0.7624 35 1 4.1831 1.3266 2.5560 36 1 2.6321 0.4532 2.5538 37 1 3.9058 0.0082 1.3928 38 1 4.5017 3.0120 2.5989 39 1 6.4292 4.4895 1.0779 40 1 5.4093 5.5903 0.0924 41 1 7.4548 6.6250 1.5275 42 1 5.8810 7.4778 1.5053 43 1 8.8599 7.2166 3.2162 44 1 7.7698 8.6179 3.3438 45 1 12.7301 11.1395 5.6073 46 1 3.1633 5.4280 4.3761 47 1 4.4219 6.3323 5.2515 48 1 3.7069 7.0107 3.7694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735297630.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:03 Heat of formation + Delta-G solvation = -87.277571 kcal Electronic energy + Delta-G solvation = -26825.938879 eV Core-core repulsion = 23006.111757 eV Total energy + Delta-G solvation = -3819.827122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.68164 -40.66466 -38.70672 -37.00360 -35.48577 -34.67794 -33.15279 -32.58614 -31.81921 -30.02323 -27.87812 -27.85114 -26.91201 -24.95300 -24.04555 -22.67337 -21.86065 -20.63314 -19.61888 -19.35346 -18.33297 -18.08247 -17.55722 -17.14309 -16.91726 -16.46819 -16.14049 -15.81813 -15.53660 -15.31311 -15.00658 -14.91419 -14.87107 -14.71383 -14.14826 -14.08074 -13.85652 -13.72138 -13.45486 -13.34827 -13.30586 -13.08415 -13.01187 -12.97556 -12.78636 -12.66304 -12.58515 -12.31199 -12.19750 -11.89517 -11.85619 -11.71666 -11.17516 -11.03793 -10.92555 -10.55252 -10.27651 -9.89996 -9.80547 -9.01037 -8.51924 -6.23205 0.36477 0.93673 1.31043 1.41705 1.49163 1.51116 1.83840 2.21717 2.23892 2.26298 2.66629 2.86353 3.17966 3.44847 3.69091 3.73867 3.86978 3.95101 4.08261 4.12164 4.18720 4.19480 4.24518 4.27969 4.40460 4.45183 4.51416 4.60831 4.68156 4.69902 4.75919 4.83234 4.85822 4.92430 5.01829 5.06907 5.10554 5.15603 5.16567 5.28529 5.34218 5.40412 5.55432 5.61120 5.70203 6.10901 6.27498 6.47100 6.93041 7.02447 7.15482 8.60431 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032666 B = 0.001890 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.951366 B =14812.805576 C =15095.873154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.064 4.064 4 C -0.201 4.201 5 C -0.113 4.113 6 C 0.554 3.446 7 O -0.583 6.583 8 N -0.706 5.706 9 C 0.147 3.853 10 H 0.099 0.901 11 C -0.133 4.133 12 C 0.093 3.907 13 N -0.611 5.611 14 C 0.553 3.447 15 O -0.554 6.554 16 C -0.105 4.105 17 S -0.171 6.171 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.047 3.953 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.261 1.261 24 H -0.259 1.259 25 H -0.237 1.237 26 C 0.134 3.866 27 H 0.083 0.917 28 C -0.158 4.158 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.413 0.587 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.277 0.723 46 H 0.083 0.917 47 H 0.049 0.951 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.386 -23.841 -11.007 34.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.141 4.141 3 C -0.084 4.084 4 C -0.204 4.204 5 C -0.169 4.169 6 C 0.344 3.656 7 O -0.465 6.465 8 N -0.359 5.359 9 C 0.041 3.959 10 H 0.117 0.883 11 C -0.172 4.172 12 C -0.029 4.029 13 N -0.346 5.346 14 C 0.340 3.660 15 O -0.431 6.431 16 C -0.255 4.255 17 S 0.056 5.944 18 C -0.678 4.678 19 H 0.080 0.920 20 C -0.159 4.159 21 N -0.554 5.554 22 Si 0.736 3.264 23 H -0.186 1.186 24 H -0.183 1.183 25 H -0.161 1.161 26 C 0.031 3.969 27 H 0.101 0.899 28 C -0.216 4.216 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.253 0.747 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.086 0.914 46 H 0.102 0.898 47 H 0.068 0.932 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.812 -23.531 -9.755 34.194 hybrid contribution 0.996 0.821 -0.553 1.405 sum -21.816 -22.710 -10.309 33.135 Atomic orbital electron populations 1.21710 0.94191 1.02769 1.01952 1.20885 0.96685 0.91956 1.04531 1.23764 0.91613 0.98435 0.94600 1.21479 1.03840 0.92539 1.02544 1.20854 1.01304 0.97505 0.97270 1.18814 0.77546 0.89361 0.79865 1.90775 1.56708 1.56680 1.42290 1.45816 1.46549 1.09466 1.34085 1.21844 0.97577 0.83458 0.93041 0.88272 1.23154 0.96549 0.97980 0.99523 1.22628 1.03069 0.99263 0.77965 1.48393 1.30584 1.48144 1.07477 1.19582 0.82062 0.79996 0.84312 1.90679 1.71360 1.60877 1.20223 1.23223 0.98446 1.01942 1.01918 1.84668 1.37010 1.61040 1.11713 1.22453 1.16283 1.32779 0.96270 0.92000 1.25552 0.93512 0.93245 1.03549 1.70015 1.17221 1.30263 1.37880 0.85874 0.81434 0.79211 0.79891 1.18608 1.18328 1.16082 1.21672 0.86192 0.93502 0.95578 0.89875 1.22086 0.98170 1.01280 1.00060 0.90804 0.93031 0.92737 0.89015 0.89129 0.87356 0.91397 0.89702 0.89596 0.74718 0.89373 0.88510 0.88951 0.89575 0.87067 0.87258 0.91358 0.89777 0.93213 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 71.98 0.71 -0.27 16 2 C -0.10 -0.68 6.15 29.85 0.18 -0.49 16 3 C -0.06 -0.79 9.08 24.52 0.22 -0.56 16 4 C -0.20 -2.58 5.99 -18.71 -0.11 -2.69 16 5 C -0.11 -0.72 8.51 71.24 0.61 -0.11 16 6 C 0.55 10.19 7.75 86.57 0.67 10.86 16 7 O -0.58 -15.31 15.95 -4.06 -0.06 -15.38 16 8 N -0.71 -10.30 5.17 -440.52 -2.28 -12.58 16 9 C 0.15 2.52 2.75 46.18 0.13 2.65 16 10 H 0.10 1.94 7.40 -2.39 -0.02 1.93 16 11 C -0.13 -2.12 6.76 31.99 0.22 -1.90 16 12 C 0.09 1.75 6.70 86.83 0.58 2.33 16 13 N -0.61 -15.44 3.07 -787.79 -2.42 -17.86 16 14 C 0.55 19.29 7.66 87.66 0.67 19.96 16 15 O -0.55 -23.31 14.92 -3.01 -0.04 -23.36 16 16 C -0.10 -3.99 5.16 71.24 0.37 -3.62 16 17 S -0.17 -8.62 18.55 -56.49 -1.05 -9.67 16 18 C -0.53 -30.84 10.04 67.96 0.68 -30.16 16 19 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 20 C 0.05 2.75 5.50 84.86 0.47 3.22 16 21 N -0.92 -55.65 13.97 21.65 0.30 -55.35 16 22 Si 0.91 44.83 27.74 68.60 1.90 46.74 16 23 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.24 -11.61 6.74 99.48 0.67 -10.94 16 26 C 0.13 2.78 3.20 45.34 0.15 2.93 16 27 H 0.08 1.68 7.70 -2.39 -0.02 1.66 16 28 C -0.16 -3.46 9.10 71.98 0.66 -2.80 16 29 H 0.07 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.09 0.38 5.94 -2.39 -0.01 0.36 16 34 H 0.11 1.71 7.51 -2.91 -0.02 1.69 16 35 H 0.07 0.34 5.87 -2.39 -0.01 0.33 16 36 H 0.08 0.38 7.71 -2.39 -0.02 0.36 16 37 H 0.09 0.37 7.86 -2.39 -0.02 0.35 16 38 H 0.41 4.18 6.06 -92.71 -0.56 3.62 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.09 1.65 7.48 -2.39 -0.02 1.64 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.11 3.91 7.85 -2.40 -0.02 3.89 16 44 H 0.11 3.90 8.14 -2.40 -0.02 3.89 16 45 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.05 1.40 6.91 -2.39 -0.02 1.38 16 48 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -76.85 400.62 2.91 -73.95 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.36 Total: 14.17 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 6.20 Total: -0.67 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -4.39 Total: -85.78 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -0.11 Total: -38.74 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.74 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.05 Total: -9.67 kcal Total: -76.85 2.91 -73.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735297630.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.332 kcal (2) G-P(sol) polarization free energy of solvation -76.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds