Wall clock time and date at job start Sat Apr 11 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47226 * 2 1 4 4 C 1.50700 * 115.54691 * 294.71890 * 3 2 1 5 5 O 1.21282 * 120.00181 * 99.56544 * 4 3 2 6 6 N 1.34783 * 119.99973 * 279.56713 * 4 3 2 7 7 C 1.47419 * 125.65002 * 354.98008 * 6 4 3 8 8 C 1.54909 * 104.83248 * 155.83654 * 7 6 4 9 9 C 1.55165 * 101.57967 * 37.01352 * 8 7 6 10 10 H 1.09000 * 110.71788 * 82.86125 * 9 8 7 11 11 N 1.46498 * 110.71838 * 206.13355 * 9 8 7 12 12 C 1.46494 * 120.00025 * 58.54928 * 11 9 8 13 13 C 1.34774 * 119.99826 * 238.54387 * 11 9 8 14 14 O 1.21286 * 119.99911 * 0.02562 * 13 11 9 15 15 C 1.50697 * 120.00099 * 180.02562 * 13 11 9 16 16 S 1.81004 * 109.47253 * 180.02562 * 15 13 11 17 17 C 1.76200 * 99.99853 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00208 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99928 * 180.02562 * 17 16 15 20 20 N 1.31626 * 119.99922 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99965 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47164 * 90.00122 * 21 19 17 23 23 H 1.48501 * 109.47121 * 209.99577 * 21 19 17 24 24 H 1.48497 * 109.47218 * 330.00106 * 21 19 17 25 25 C 1.47022 * 125.64641 * 174.94757 * 6 4 3 26 26 C 1.53000 * 117.52310 * 80.42542 * 3 2 1 27 27 C 1.52998 * 60.00033 * 107.47925 * 26 3 2 28 28 H 1.08997 * 109.47268 * 175.72461 * 1 2 3 29 29 H 1.09003 * 109.47015 * 295.72418 * 1 2 3 30 30 H 1.09000 * 109.47035 * 55.71984 * 1 2 3 31 31 H 1.08997 * 109.47099 * 239.99472 * 2 1 3 32 32 H 1.09005 * 109.47289 * 119.99650 * 2 1 3 33 33 H 1.09004 * 110.36245 * 37.00418 * 7 6 4 34 34 H 1.08995 * 110.37261 * 274.67926 * 7 6 4 35 35 H 1.09002 * 111.00804 * 278.94454 * 8 7 6 36 36 H 1.08996 * 111.00424 * 155.08691 * 8 7 6 37 37 H 1.08996 * 109.47553 * 89.99937 * 12 11 9 38 38 H 1.09011 * 109.47258 * 209.99618 * 12 11 9 39 39 H 1.08998 * 109.47221 * 329.99647 * 12 11 9 40 40 H 1.09003 * 109.47234 * 299.99918 * 15 13 11 41 41 H 1.09003 * 109.47312 * 60.00023 * 15 13 11 42 42 H 0.97003 * 120.00317 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.88273 * 61.67135 * 25 6 4 44 44 H 1.08996 * 109.87845 * 300.50839 * 25 6 4 45 45 H 1.09000 * 117.49731 * 214.97183 * 26 3 2 46 46 H 1.08993 * 117.49600 * 359.97438 * 26 3 2 47 47 H 1.08998 * 117.50071 * 252.50921 * 27 26 3 48 48 H 1.08999 * 117.49746 * 107.49229 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7206 2.2447 -1.2351 5 8 0.7872 3.0192 -1.2306 6 7 2.4722 2.1016 -2.3447 7 6 3.6911 1.2801 -2.4568 8 6 3.8063 0.9451 -3.9648 9 6 3.3132 2.2646 -4.6155 10 1 4.1213 2.9942 -4.6679 11 7 2.7561 2.0096 -5.9462 12 6 1.6290 1.0872 -6.1040 13 6 3.2804 2.6237 -7.0252 14 8 4.2138 3.3871 -6.8946 15 6 2.7071 2.3619 -8.3940 16 16 3.6195 3.3256 -9.6249 17 6 2.7646 2.8415 -11.0876 18 1 1.9441 2.1419 -11.0270 19 6 3.1464 3.3585 -12.3178 20 7 4.1467 4.2108 -12.3917 21 14 2.2396 2.8458 -13.8684 22 1 1.1062 3.7747 -14.1091 23 1 3.1708 2.8913 -15.0243 24 1 1.7210 1.4640 -13.7046 25 6 2.2117 2.7384 -3.6440 26 6 2.0629 2.1843 1.3379 27 6 3.3729 1.7205 0.6979 28 1 -0.3634 -1.0248 -0.0766 29 1 -0.3633 0.4461 0.9258 30 1 -0.3633 0.5788 -0.8492 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.5875 0.3660 -1.8720 34 1 4.5619 1.8462 -2.1263 35 1 3.1561 0.1116 -4.2307 36 1 4.8398 0.7359 -4.2407 37 1 0.6930 1.6391 -6.0179 38 1 1.6822 0.6128 -7.0840 39 1 1.6732 0.3234 -5.3277 40 1 2.7934 1.3007 -8.6273 41 1 1.6568 2.6532 -8.4098 42 1 4.4138 4.5719 -13.2515 43 1 2.2506 3.8227 -3.5398 44 1 1.2334 2.4346 -4.0162 45 1 1.8469 3.2526 1.3248 46 1 1.7142 1.6448 2.2185 47 1 3.8862 0.8759 1.1574 48 1 4.0187 2.4837 0.2637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737035916.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:05 Heat of formation + Delta-G solvation = -63.672144 kcal Electronic energy + Delta-G solvation = -27448.113570 eV Core-core repulsion = 23629.310056 eV Total energy + Delta-G solvation = -3818.803514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.77274 -40.85597 -38.91173 -37.79063 -36.16098 -34.58763 -32.83504 -32.51439 -30.79015 -29.59422 -27.92913 -27.66802 -25.97830 -24.66609 -23.33921 -22.79392 -22.30725 -20.45994 -19.77146 -19.62590 -18.48231 -17.83133 -17.21248 -16.98397 -16.88645 -16.84672 -16.64878 -16.02888 -15.56842 -15.38161 -14.83352 -14.67889 -14.55834 -14.40267 -14.30252 -14.25407 -13.89835 -13.61187 -13.44570 -13.33254 -13.20454 -13.13302 -12.90334 -12.83264 -12.69021 -12.58890 -12.57434 -12.41267 -12.12672 -11.80129 -11.71812 -11.37776 -11.14667 -11.02146 -10.94742 -10.77337 -10.27512 -9.80960 -9.78192 -8.67722 -8.34976 -6.13167 1.21434 1.41861 1.42264 1.46845 1.50161 1.54725 1.73465 2.14382 2.27017 2.69113 2.99260 3.22050 3.28752 3.43110 3.59855 3.71848 3.74804 3.87470 3.92760 4.02086 4.06017 4.13561 4.22013 4.30692 4.40790 4.46317 4.51991 4.54411 4.57110 4.61643 4.70260 4.73407 4.75782 4.84488 4.92127 4.98179 5.01703 5.07174 5.08182 5.18118 5.18351 5.20193 5.37698 5.41680 5.48663 6.16979 6.19991 6.38891 7.03055 7.06247 7.07056 8.74167 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029500 B = 0.002020 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.911942 B =13857.819553 C =14189.430473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.071 4.071 3 C -0.162 4.162 4 C 0.560 3.440 5 O -0.586 6.586 6 N -0.610 5.610 7 C 0.104 3.896 8 C -0.134 4.134 9 C 0.131 3.869 10 H 0.095 0.905 11 N -0.601 5.601 12 C 0.067 3.933 13 C 0.536 3.464 14 O -0.561 6.561 15 C -0.123 4.123 16 S -0.152 6.152 17 C -0.544 4.544 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.256 1.256 25 C 0.102 3.898 26 C -0.154 4.154 27 C -0.141 4.141 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.026 0.974 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.271 0.729 43 H 0.050 0.950 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.124 0.876 47 H 0.136 0.864 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.888 -15.574 28.330 32.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 C -0.165 4.165 4 C 0.351 3.649 5 O -0.466 6.466 6 N -0.343 5.343 7 C -0.018 4.018 8 C -0.172 4.172 9 C 0.026 3.974 10 H 0.113 0.887 11 N -0.334 5.334 12 C -0.074 4.074 13 C 0.324 3.676 14 O -0.439 6.439 15 C -0.274 4.274 16 S 0.075 5.925 17 C -0.692 4.692 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.180 1.180 25 C -0.022 4.022 26 C -0.192 4.192 27 C -0.178 4.178 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.119 0.881 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.142 0.858 47 H 0.154 0.846 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.956 -13.941 28.486 31.852 hybrid contribution -1.609 -0.114 -1.501 2.203 sum -4.565 -14.055 26.986 30.767 Atomic orbital electron populations 1.21730 0.96113 1.01890 1.01165 1.21053 0.95431 0.89954 1.04433 1.21437 1.05982 0.98060 0.90980 1.19937 0.80426 0.81277 0.83305 1.90692 1.32205 1.39636 1.84068 1.48439 1.28016 1.48256 1.09597 1.22592 0.86207 0.96315 0.96653 1.23215 1.04116 0.96268 0.93650 1.22003 0.95133 0.99583 0.80666 0.88703 1.47682 1.35052 1.45476 1.05188 1.22089 0.87466 0.93168 1.04712 1.20154 0.82228 0.79188 0.86060 1.90683 1.29806 1.37231 1.86208 1.23378 1.04149 1.05452 0.94452 1.85587 1.46792 1.60147 0.99981 1.23186 1.20856 1.32111 0.93072 0.89854 1.26132 0.95974 0.94427 1.02686 1.70181 1.27729 1.29918 1.26916 0.84957 0.77764 0.79219 0.76063 1.19488 1.20306 1.18029 1.22069 0.99339 0.97266 0.83571 1.23066 1.01368 1.00138 0.94590 1.23276 0.89194 1.04281 1.01009 0.90894 0.92705 0.95476 0.90229 0.88030 0.86914 0.89723 0.88269 0.88035 0.91917 0.89624 0.88144 0.86890 0.87660 0.92011 0.93150 0.90989 0.90475 0.85807 0.84610 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.84 71.98 0.71 -1.20 16 2 C -0.07 -0.63 5.71 30.59 0.17 -0.45 16 3 C -0.16 -2.15 0.96 -52.93 -0.05 -2.20 16 4 C 0.56 12.31 6.32 87.66 0.55 12.87 16 5 O -0.59 -18.75 17.34 -3.04 -0.05 -18.81 16 6 N -0.61 -11.35 3.33 -811.81 -2.70 -14.05 16 7 C 0.10 1.13 6.17 86.86 0.54 1.67 16 8 C -0.13 -1.75 6.62 31.99 0.21 -1.54 16 9 C 0.13 2.89 3.35 46.18 0.15 3.04 16 10 H 0.09 2.60 7.00 -2.39 -0.02 2.59 16 11 N -0.60 -15.28 2.88 -815.96 -2.35 -17.64 16 12 C 0.07 1.17 8.98 127.77 1.15 2.32 16 13 C 0.54 19.63 7.69 87.66 0.67 20.30 16 14 O -0.56 -25.63 15.24 -3.05 -0.05 -25.68 16 15 C -0.12 -4.83 4.71 71.23 0.34 -4.49 16 16 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 17 C -0.54 -30.86 9.50 67.95 0.65 -30.21 16 18 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 19 C 0.01 0.71 5.49 84.86 0.47 1.18 16 20 N -0.91 -55.87 13.22 21.65 0.29 -55.58 16 21 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 25 C 0.10 2.32 6.50 86.73 0.56 2.88 16 26 C -0.15 -1.90 9.88 30.59 0.30 -1.60 16 27 C -0.14 -1.17 9.25 30.59 0.28 -0.88 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.03 0.50 7.59 -2.39 -0.02 0.48 16 31 H 0.08 0.55 7.25 -2.39 -0.02 0.53 16 32 H 0.10 0.40 8.09 -2.38 -0.02 0.38 16 33 H 0.11 0.63 6.64 -2.38 -0.02 0.61 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 35 H 0.10 1.02 6.30 -2.39 -0.02 1.00 16 36 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.07 7.87 -2.39 -0.02 1.05 16 38 H 0.09 1.44 6.44 -2.38 -0.02 1.42 16 39 H 0.10 1.17 6.30 -2.39 -0.02 1.15 16 40 H 0.11 3.91 7.40 -2.39 -0.02 3.89 16 41 H 0.11 3.80 8.11 -2.39 -0.02 3.78 16 42 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.07 1.68 6.78 -2.39 -0.02 1.66 16 45 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -83.52 399.60 3.65 -79.87 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.95 Total: 14.39 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 6.71 Total: 1.67 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -4.77 Total: -87.27 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -0.10 Total: -44.49 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -83.52 3.65 -79.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737035916.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.194 kcal (2) G-P(sol) polarization free energy of solvation -83.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds