Wall clock time and date at job start Sat Apr 11 2020 06:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47788 * 2 1 4 4 C 1.50700 * 115.54857 * 294.72524 * 3 2 1 5 5 O 1.21280 * 120.00245 * 100.63242 * 4 3 2 6 6 N 1.34774 * 119.99943 * 280.63642 * 4 3 2 7 7 C 1.47426 * 125.65160 * 355.05576 * 6 4 3 8 8 C 1.55109 * 104.94515 * 203.96898 * 7 6 4 9 9 C 1.55155 * 101.48736 * 323.21994 * 8 7 6 10 10 H 1.09001 * 110.71976 * 276.82823 * 9 8 7 11 11 N 1.46504 * 110.72448 * 153.73457 * 9 8 7 12 12 C 1.46503 * 119.99865 * 303.84647 * 11 9 8 13 13 C 1.34773 * 120.00198 * 123.83989 * 11 9 8 14 14 O 1.21284 * 119.99985 * 0.02562 * 13 11 9 15 15 C 1.50699 * 119.99990 * 180.02562 * 13 11 9 16 16 S 1.81010 * 109.46990 * 180.02562 * 15 13 11 17 17 C 1.76202 * 99.99978 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99954 * 359.97438 * 17 16 15 19 19 C 1.38789 * 120.00085 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00388 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99936 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46932 * 270.00083 * 21 19 17 23 23 H 1.48496 * 109.46837 * 149.99953 * 21 19 17 24 24 H 1.48491 * 109.47002 * 29.99994 * 21 19 17 25 25 C 1.47021 * 125.64765 * 175.01020 * 6 4 3 26 26 C 1.52997 * 117.51541 * 80.41952 * 3 2 1 27 27 C 1.52991 * 117.50433 * 149.05071 * 3 2 1 28 28 H 1.09002 * 109.47675 * 175.69066 * 1 2 3 29 29 H 1.08995 * 109.46953 * 295.69339 * 1 2 3 30 30 H 1.09006 * 109.46940 * 55.68792 * 1 2 3 31 31 H 1.09005 * 109.47292 * 239.99549 * 2 1 3 32 32 H 1.09000 * 109.46871 * 120.00430 * 2 1 3 33 33 H 1.08999 * 110.36232 * 322.93541 * 7 6 4 34 34 H 1.09001 * 110.36688 * 85.13631 * 7 6 4 35 35 H 1.09006 * 111.16802 * 205.12778 * 8 7 6 36 36 H 1.09006 * 110.94221 * 81.21520 * 8 7 6 37 37 H 1.08997 * 109.46688 * 269.99815 * 12 11 9 38 38 H 1.09000 * 109.47065 * 29.99762 * 12 11 9 39 39 H 1.08999 * 109.46967 * 149.99328 * 12 11 9 40 40 H 1.08998 * 109.47394 * 60.00575 * 15 13 11 41 41 H 1.08998 * 109.46813 * 299.99747 * 15 13 11 42 42 H 0.97001 * 120.00291 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.88395 * 59.56420 * 25 6 4 44 44 H 1.09000 * 109.88953 * 298.39507 * 25 6 4 45 45 H 1.09004 * 117.49694 * 214.97636 * 26 3 2 46 46 H 1.08999 * 117.50447 * 359.97438 * 26 3 2 47 47 H 1.09007 * 117.49555 * 359.97438 * 27 3 2 48 48 H 1.08999 * 117.50384 * 144.97251 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.7207 2.2448 -1.2350 5 8 0.7994 3.0335 -1.2243 6 7 2.4587 2.0859 -2.3514 7 6 3.6628 1.2439 -2.4729 8 6 4.4573 1.8508 -3.6588 9 6 3.3108 2.2700 -4.6164 10 1 2.9804 1.4223 -5.2167 11 7 3.7329 3.3784 -5.4765 12 6 4.2319 4.6198 -4.8795 13 6 3.6623 3.2561 -6.8168 14 8 3.2490 2.2285 -7.3110 15 6 4.0971 4.3960 -7.7014 16 16 3.8830 3.9285 -9.4369 17 6 4.4496 5.4004 -10.2225 18 1 4.7882 6.2348 -9.6261 19 6 4.4607 5.4877 -11.6076 20 7 4.8844 6.5871 -12.1945 21 14 3.8743 4.0448 -12.6390 22 1 5.0213 3.1489 -12.9342 23 1 3.2988 4.5480 -13.9121 24 1 2.8369 3.2906 -11.8907 25 6 2.1958 2.7226 -3.6502 26 6 2.0629 2.1841 1.3380 27 6 3.3729 1.7205 0.6979 28 1 -0.3634 -1.0247 -0.0772 29 1 -0.3633 0.4455 0.9260 30 1 -0.3633 0.5793 -0.8489 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 4.2520 1.2903 -1.5570 34 1 3.3845 0.2131 -2.6921 35 1 5.1016 1.1046 -4.1238 36 1 5.0349 2.7177 -3.3378 37 1 3.3995 5.3042 -4.7154 38 1 4.7125 4.3973 -3.9268 39 1 4.9548 5.0814 -5.5521 40 1 5.1464 4.6227 -7.5127 41 1 3.4906 5.2755 -7.4850 42 1 4.8919 6.6482 -13.1625 43 1 2.2165 3.8071 -3.5424 44 1 1.2248 2.4043 -4.0296 45 1 1.8468 3.2524 1.3249 46 1 1.7140 1.6447 2.2185 47 1 3.8862 0.8757 1.1575 48 1 4.0190 2.4834 0.2636 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737035917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:11 Heat of formation + Delta-G solvation = -40.245912 kcal Electronic energy + Delta-G solvation = -27462.978227 eV Core-core repulsion = 23645.190551 eV Total energy + Delta-G solvation = -3817.787676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.95363 -39.80471 -38.02926 -37.01254 -35.09087 -32.45861 -32.36122 -31.56336 -29.81386 -28.53797 -27.01438 -25.66256 -25.26057 -24.05843 -22.90411 -22.14778 -21.39387 -19.34101 -19.03667 -17.82219 -17.27753 -17.09928 -16.35327 -16.09031 -15.73132 -15.60520 -15.28974 -14.96203 -14.42040 -14.25135 -14.02314 -13.89383 -13.61193 -13.39096 -13.25207 -13.16199 -12.81386 -12.77677 -12.68638 -12.41554 -12.18088 -12.16410 -12.03408 -11.97920 -11.75929 -11.59486 -11.28078 -11.11758 -11.02643 -10.84861 -10.63140 -10.49837 -10.00511 -9.88050 -9.58366 -9.02389 -8.99801 -8.74485 -8.52478 -6.94953 -6.30760 -4.03040 2.25699 2.38170 2.72024 2.81589 3.12347 3.20665 3.31447 3.48900 3.55638 3.94591 4.10514 4.14816 4.31105 4.32536 4.37355 4.51280 4.56597 4.68357 4.79776 4.90636 4.90937 4.94328 5.00763 5.08126 5.08212 5.11989 5.16189 5.19014 5.29591 5.38108 5.41538 5.45159 5.50097 5.55140 5.61732 5.63081 5.64593 5.66763 5.73793 5.78933 5.90478 5.92372 5.96513 6.43449 7.13592 7.30225 7.84228 7.92130 8.31567 8.39518 9.15289 10.78358 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029513 B = 0.002076 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.511422 B =13482.837733 C =13722.945290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.077 4.077 3 C -0.152 4.152 4 C 0.567 3.433 5 O -0.532 6.532 6 N -0.612 5.612 7 C 0.101 3.899 8 C -0.146 4.146 9 C 0.134 3.866 10 H 0.119 0.881 11 N -0.614 5.614 12 C 0.074 3.926 13 C 0.535 3.465 14 O -0.516 6.516 15 C -0.121 4.121 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.097 3.903 26 C -0.143 4.143 27 C -0.165 4.165 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.271 0.729 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.105 0.895 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.998 -12.027 28.910 31.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 C -0.155 4.155 4 C 0.355 3.645 5 O -0.408 6.408 6 N -0.347 5.347 7 C -0.022 4.022 8 C -0.185 4.185 9 C 0.028 3.972 10 H 0.137 0.863 11 N -0.349 5.349 12 C -0.069 4.069 13 C 0.323 3.677 14 O -0.390 6.390 15 C -0.271 4.271 16 S 0.083 5.917 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.027 4.027 26 C -0.181 4.181 27 C -0.202 4.202 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.130 -12.987 28.053 30.987 hybrid contribution 0.413 0.937 -0.085 1.028 sum -1.717 -12.050 27.968 30.502 Atomic orbital electron populations 1.21734 0.94833 1.01681 1.02675 1.20991 0.96616 0.91105 1.02736 1.21428 1.03761 0.97641 0.92646 1.19185 0.81212 0.81847 0.82261 1.90726 1.30211 1.36548 1.83301 1.48346 1.28612 1.47608 1.10148 1.22420 0.85707 0.94773 0.99316 1.23257 0.97765 1.02183 0.95281 1.21969 0.93146 0.91032 0.91008 0.86336 1.47725 1.66007 1.15692 1.05480 1.21836 0.99769 0.85817 0.99488 1.20367 0.77002 0.88885 0.81396 1.90693 1.44759 1.30069 1.73452 1.23315 1.04746 0.99319 0.99728 1.84799 1.86160 1.25364 0.95330 1.22293 1.49656 1.00106 0.94797 0.89369 1.24715 0.93648 0.96027 0.96937 1.69937 1.44806 1.26318 1.10545 0.86733 0.81194 0.82990 0.80926 1.19208 1.19930 1.15927 1.22291 0.99161 0.98877 0.82383 1.23004 0.99697 1.01184 0.94172 1.23160 0.90241 1.03833 1.02975 0.92368 0.92342 0.92449 0.91171 0.90749 0.89794 0.90837 0.88874 0.89791 0.92367 0.91087 0.90074 0.88386 0.88357 0.91921 0.90587 0.90691 0.88093 0.87763 0.87660 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.84 37.15 0.37 -0.75 16 2 C -0.08 -0.48 5.81 -26.73 -0.16 -0.63 16 3 C -0.15 -1.14 1.23 -155.67 -0.19 -1.33 16 4 C 0.57 6.20 6.32 -10.99 -0.07 6.13 16 5 O -0.53 -8.01 17.32 5.56 0.10 -7.92 16 6 N -0.61 -5.83 3.33 -170.39 -0.57 -6.40 16 7 C 0.10 0.66 6.64 -2.42 -0.02 0.64 16 8 C -0.15 -1.08 6.63 -24.48 -0.16 -1.24 16 9 C 0.13 1.43 3.35 -66.09 -0.22 1.21 16 10 H 0.12 1.48 6.99 -51.93 -0.36 1.11 16 11 N -0.61 -7.70 2.88 -171.83 -0.50 -8.20 16 12 C 0.07 0.71 9.09 59.85 0.54 1.25 16 13 C 0.54 9.23 7.69 -10.99 -0.08 9.15 16 14 O -0.52 -10.68 15.23 5.55 0.08 -10.60 16 15 C -0.12 -2.28 4.71 36.01 0.17 -2.11 16 16 S -0.14 -3.57 18.55 -107.50 -1.99 -5.57 16 17 C -0.52 -14.83 10.04 30.94 0.31 -14.52 16 18 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 19 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 20 N -0.88 -26.35 13.97 55.49 0.78 -25.58 16 21 Si 0.86 21.63 27.74 -169.99 -4.72 16.92 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 25 C 0.10 1.05 6.51 -3.06 -0.02 1.03 16 26 C -0.14 -0.95 9.87 -26.73 -0.26 -1.21 16 27 C -0.17 -0.87 8.35 -26.74 -0.22 -1.09 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.56 7.59 -51.93 -0.39 0.16 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 33 H 0.08 0.41 6.09 -51.93 -0.32 0.10 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.57 6.16 -51.93 -0.32 0.25 16 37 H 0.06 0.54 7.88 -51.93 -0.41 0.13 16 38 H 0.07 0.52 6.15 -51.93 -0.32 0.20 16 39 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 40 H 0.10 1.70 7.40 -51.92 -0.38 1.32 16 41 H 0.10 1.75 8.11 -51.92 -0.42 1.33 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.08 0.88 6.89 -51.93 -0.36 0.52 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.11 0.37 8.14 -51.92 -0.42 -0.05 16 48 H 0.10 0.53 7.85 -51.93 -0.41 0.12 16 LS Contribution 396.80 15.07 5.98 5.98 Total: -1.00 -35.40 396.80 -8.78 -44.17 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.83 Total: -2.02 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -0.11 Total: -0.80 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: -0.29 Total: -40.17 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.18 Total: -18.51 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.72 Total: 16.92 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.40 -8.78 -44.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737035917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.926 kcal (2) G-P(sol) polarization free energy of solvation -35.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds