Wall clock time and date at job start Sat Apr 11 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47788 * 2 1 4 4 C 1.50700 * 115.54857 * 294.72524 * 3 2 1 5 5 O 1.21280 * 120.00245 * 100.63242 * 4 3 2 6 6 N 1.34774 * 119.99943 * 280.63642 * 4 3 2 7 7 C 1.47426 * 125.65160 * 355.05576 * 6 4 3 8 8 C 1.55109 * 104.94515 * 203.96898 * 7 6 4 9 9 C 1.55155 * 101.48736 * 323.21994 * 8 7 6 10 10 H 1.09001 * 110.71976 * 276.82823 * 9 8 7 11 11 N 1.46504 * 110.72448 * 153.73457 * 9 8 7 12 12 C 1.46503 * 119.99865 * 303.84647 * 11 9 8 13 13 C 1.34773 * 120.00198 * 123.83989 * 11 9 8 14 14 O 1.21284 * 119.99985 * 0.02562 * 13 11 9 15 15 C 1.50699 * 119.99990 * 180.02562 * 13 11 9 16 16 S 1.81010 * 109.46990 * 180.02562 * 15 13 11 17 17 C 1.76202 * 99.99978 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99954 * 359.97438 * 17 16 15 19 19 C 1.38789 * 120.00085 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00388 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99936 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46932 * 270.00083 * 21 19 17 23 23 H 1.48496 * 109.46837 * 149.99953 * 21 19 17 24 24 H 1.48491 * 109.47002 * 29.99994 * 21 19 17 25 25 C 1.47021 * 125.64765 * 175.01020 * 6 4 3 26 26 C 1.52997 * 117.51541 * 80.41952 * 3 2 1 27 27 C 1.52991 * 117.50433 * 149.05071 * 3 2 1 28 28 H 1.09002 * 109.47675 * 175.69066 * 1 2 3 29 29 H 1.08995 * 109.46953 * 295.69339 * 1 2 3 30 30 H 1.09006 * 109.46940 * 55.68792 * 1 2 3 31 31 H 1.09005 * 109.47292 * 239.99549 * 2 1 3 32 32 H 1.09000 * 109.46871 * 120.00430 * 2 1 3 33 33 H 1.08999 * 110.36232 * 322.93541 * 7 6 4 34 34 H 1.09001 * 110.36688 * 85.13631 * 7 6 4 35 35 H 1.09006 * 111.16802 * 205.12778 * 8 7 6 36 36 H 1.09006 * 110.94221 * 81.21520 * 8 7 6 37 37 H 1.08997 * 109.46688 * 269.99815 * 12 11 9 38 38 H 1.09000 * 109.47065 * 29.99762 * 12 11 9 39 39 H 1.08999 * 109.46967 * 149.99328 * 12 11 9 40 40 H 1.08998 * 109.47394 * 60.00575 * 15 13 11 41 41 H 1.08998 * 109.46813 * 299.99747 * 15 13 11 42 42 H 0.97001 * 120.00291 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.88395 * 59.56420 * 25 6 4 44 44 H 1.09000 * 109.88953 * 298.39507 * 25 6 4 45 45 H 1.09004 * 117.49694 * 214.97636 * 26 3 2 46 46 H 1.08999 * 117.50447 * 359.97438 * 26 3 2 47 47 H 1.09007 * 117.49555 * 359.97438 * 27 3 2 48 48 H 1.08999 * 117.50384 * 144.97251 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.7207 2.2448 -1.2350 5 8 0.7994 3.0335 -1.2243 6 7 2.4587 2.0859 -2.3514 7 6 3.6628 1.2439 -2.4729 8 6 4.4573 1.8508 -3.6588 9 6 3.3108 2.2700 -4.6164 10 1 2.9804 1.4223 -5.2167 11 7 3.7329 3.3784 -5.4765 12 6 4.2319 4.6198 -4.8795 13 6 3.6623 3.2561 -6.8168 14 8 3.2490 2.2285 -7.3110 15 6 4.0971 4.3960 -7.7014 16 16 3.8830 3.9285 -9.4369 17 6 4.4496 5.4004 -10.2225 18 1 4.7882 6.2348 -9.6261 19 6 4.4607 5.4877 -11.6076 20 7 4.8844 6.5871 -12.1945 21 14 3.8743 4.0448 -12.6390 22 1 5.0213 3.1489 -12.9342 23 1 3.2988 4.5480 -13.9121 24 1 2.8369 3.2906 -11.8907 25 6 2.1958 2.7226 -3.6502 26 6 2.0629 2.1841 1.3380 27 6 3.3729 1.7205 0.6979 28 1 -0.3634 -1.0247 -0.0772 29 1 -0.3633 0.4455 0.9260 30 1 -0.3633 0.5793 -0.8489 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 4.2520 1.2903 -1.5570 34 1 3.3845 0.2131 -2.6921 35 1 5.1016 1.1046 -4.1238 36 1 5.0349 2.7177 -3.3378 37 1 3.3995 5.3042 -4.7154 38 1 4.7125 4.3973 -3.9268 39 1 4.9548 5.0814 -5.5521 40 1 5.1464 4.6227 -7.5127 41 1 3.4906 5.2755 -7.4850 42 1 4.8919 6.6482 -13.1625 43 1 2.2165 3.8071 -3.5424 44 1 1.2248 2.4043 -4.0296 45 1 1.8468 3.2524 1.3249 46 1 1.7140 1.6447 2.2185 47 1 3.8862 0.8757 1.1575 48 1 4.0190 2.4834 0.2636 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737035917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:10 Heat of formation + Delta-G solvation = -62.996786 kcal Electronic energy + Delta-G solvation = -27463.964779 eV Core-core repulsion = 23645.190551 eV Total energy + Delta-G solvation = -3818.774228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.78275 -40.89060 -38.91916 -37.79341 -36.18806 -34.67626 -32.85899 -32.54214 -30.82274 -29.62873 -27.94973 -27.85446 -26.00129 -24.68959 -23.35839 -22.79504 -22.36286 -20.49824 -19.76560 -19.65392 -18.53085 -17.83626 -17.29476 -17.14996 -16.92676 -16.84101 -16.60119 -16.13680 -15.63799 -15.05546 -14.95161 -14.84498 -14.70800 -14.52249 -14.50255 -14.26008 -13.81774 -13.67902 -13.50593 -13.36763 -13.34185 -13.17213 -13.02142 -12.88246 -12.73042 -12.58446 -12.56496 -12.41368 -12.13343 -11.87798 -11.80696 -11.37339 -11.17508 -11.03742 -10.99045 -10.76260 -10.53804 -9.82619 -9.80023 -9.01100 -8.51950 -6.23069 0.94844 1.30780 1.38771 1.45198 1.47317 1.51533 1.73163 2.11044 2.24432 2.66863 2.69221 2.86227 3.27092 3.37166 3.59823 3.62128 3.71736 3.84843 3.94782 4.01223 4.05376 4.10397 4.16484 4.28569 4.38496 4.41991 4.50787 4.53339 4.56837 4.60264 4.70135 4.73327 4.75195 4.83628 4.91838 4.97997 5.01890 5.04230 5.06934 5.14527 5.18669 5.20529 5.33924 5.45073 5.70254 6.10884 6.13080 6.38658 6.93137 6.99892 7.03478 8.60258 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029513 B = 0.002076 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.511422 B =13482.837733 C =13722.945290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.072 4.072 3 C -0.164 4.164 4 C 0.560 3.440 5 O -0.586 6.586 6 N -0.610 5.610 7 C 0.102 3.898 8 C -0.134 4.134 9 C 0.132 3.868 10 H 0.100 0.900 11 N -0.599 5.599 12 C 0.066 3.934 13 C 0.537 3.463 14 O -0.558 6.558 15 C -0.106 4.106 16 S -0.176 6.176 17 C -0.527 4.527 18 H 0.063 0.937 19 C 0.045 3.955 20 N -0.916 5.916 21 Si 0.914 3.086 22 H -0.261 1.261 23 H -0.260 1.260 24 H -0.238 1.238 25 C 0.101 3.899 26 C -0.153 4.153 27 C -0.139 4.139 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.023 0.977 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.277 0.723 43 H 0.069 0.931 44 H 0.052 0.948 45 H 0.079 0.921 46 H 0.122 0.878 47 H 0.135 0.865 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 -13.969 31.432 34.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 C -0.167 4.167 4 C 0.350 3.650 5 O -0.466 6.466 6 N -0.343 5.343 7 C -0.020 4.020 8 C -0.172 4.172 9 C 0.027 3.973 10 H 0.118 0.882 11 N -0.333 5.333 12 C -0.076 4.076 13 C 0.325 3.675 14 O -0.436 6.436 15 C -0.257 4.257 16 S 0.050 5.950 17 C -0.675 4.675 18 H 0.081 0.919 19 C -0.161 4.161 20 N -0.554 5.554 21 Si 0.736 3.264 22 H -0.185 1.185 23 H -0.185 1.185 24 H -0.162 1.162 25 C -0.024 4.024 26 C -0.190 4.190 27 C -0.175 4.175 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.098 0.902 46 H 0.140 0.860 47 H 0.153 0.847 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.467 -14.927 30.618 34.066 hybrid contribution -0.110 1.620 -0.697 1.767 sum -0.577 -13.306 29.921 32.752 Atomic orbital electron populations 1.21737 0.96325 1.01781 1.01129 1.21028 0.95263 0.90384 1.04289 1.21414 1.06356 0.97815 0.91148 1.19912 0.80349 0.81353 0.83344 1.90693 1.32544 1.39045 1.84334 1.48432 1.29298 1.47442 1.09131 1.22650 0.84479 0.94701 1.00164 1.23257 0.96609 1.03066 0.94300 1.22036 0.94781 0.89655 0.90808 0.88232 1.47667 1.64387 1.17167 1.04040 1.22110 1.00204 0.84509 1.00787 1.20031 0.76995 0.87672 0.82806 1.90680 1.47036 1.31276 1.74565 1.23287 1.06334 1.00412 0.95649 1.84716 1.86160 1.23925 1.00171 1.22436 1.49196 1.00739 0.95123 0.91881 1.25564 0.93850 0.98447 0.98191 1.70015 1.46048 1.28086 1.11247 0.85868 0.80853 0.79983 0.79678 1.18513 1.18467 1.16180 1.22093 0.98280 0.98542 0.83460 1.23072 1.01338 1.00221 0.94389 1.23303 0.89117 1.04326 1.00788 0.91102 0.92430 0.95763 0.90701 0.87941 0.87058 0.89555 0.87660 0.88406 0.91927 0.88059 0.89684 0.86514 0.87291 0.91377 0.91304 0.92952 0.90195 0.86010 0.84702 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.84 71.98 0.71 -1.41 16 2 C -0.07 -0.70 5.81 30.59 0.18 -0.52 16 3 C -0.16 -2.12 1.23 -52.93 -0.06 -2.18 16 4 C 0.56 11.99 6.32 87.66 0.55 12.55 16 5 O -0.59 -18.43 17.32 -3.03 -0.05 -18.48 16 6 N -0.61 -10.84 3.33 -811.39 -2.70 -13.54 16 7 C 0.10 0.99 6.64 86.92 0.58 1.57 16 8 C -0.13 -1.54 6.63 32.06 0.21 -1.33 16 9 C 0.13 2.66 3.35 46.18 0.15 2.82 16 10 H 0.10 2.47 6.99 -2.39 -0.02 2.45 16 11 N -0.60 -14.22 2.88 -815.94 -2.35 -16.57 16 12 C 0.07 1.10 9.09 127.77 1.16 2.26 16 13 C 0.54 18.21 7.69 87.66 0.67 18.88 16 14 O -0.56 -23.22 15.23 -3.04 -0.05 -23.27 16 15 C -0.11 -3.94 4.71 71.24 0.34 -3.61 16 16 S -0.18 -8.84 18.55 -56.49 -1.05 -9.89 16 17 C -0.53 -30.48 10.04 67.95 0.68 -29.80 16 18 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 19 C 0.04 2.63 5.50 84.85 0.47 3.09 16 20 N -0.92 -55.57 13.97 21.65 0.30 -55.27 16 21 Si 0.91 44.88 27.74 68.60 1.90 46.78 16 22 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.24 -11.69 6.74 99.48 0.67 -11.02 16 25 C 0.10 2.18 6.51 86.73 0.56 2.75 16 26 C -0.15 -1.72 9.87 30.59 0.30 -1.42 16 27 C -0.14 -0.92 8.35 30.59 0.26 -0.67 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.02 0.48 7.59 -2.38 -0.02 0.46 16 31 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.10 0.47 8.09 -2.39 -0.02 0.45 16 33 H 0.11 0.55 6.09 -2.39 -0.01 0.53 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 35 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.10 0.90 6.16 -2.38 -0.01 0.89 16 37 H 0.06 1.05 7.88 -2.39 -0.02 1.03 16 38 H 0.10 1.12 6.15 -2.39 -0.01 1.11 16 39 H 0.08 1.41 6.44 -2.39 -0.02 1.39 16 40 H 0.12 3.90 7.40 -2.40 -0.02 3.89 16 41 H 0.11 3.82 8.11 -2.40 -0.02 3.80 16 42 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.07 1.59 6.89 -2.38 -0.02 1.57 16 44 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.13 0.17 8.14 -2.38 -0.02 0.15 16 48 H 0.10 0.67 7.85 -2.39 -0.02 0.65 16 Total: -1.00 -80.72 396.80 3.68 -77.04 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.91 Total: 10.23 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 6.76 Total: 2.98 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -4.75 Total: -85.38 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -0.10 Total: -41.75 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.90 Total: 46.78 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -80.72 3.68 -77.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737035917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.046 kcal (2) G-P(sol) polarization free energy of solvation -80.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds