Wall clock time and date at job start Sat Apr 11 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00416 * 2 1 4 4 C 1.50709 * 119.99418 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.47079 * 95.00684 * 4 2 1 6 6 C 1.50701 * 109.46946 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00166 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99585 * 179.97438 * 6 5 4 9 9 C 1.46926 * 120.62730 * 180.02562 * 8 6 5 10 10 C 1.53191 * 108.89109 * 126.46248 * 9 8 6 11 11 C 1.53044 * 109.31440 * 54.56430 * 10 9 8 12 12 N 1.46498 * 109.46002 * 178.62636 * 11 10 9 13 13 C 1.34775 * 120.00032 * 205.00153 * 12 11 10 14 14 O 1.21289 * 119.99853 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99951 * 180.02562 * 13 12 11 16 16 S 1.81008 * 109.46906 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99740 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00146 * 359.97438 * 17 16 15 19 19 C 1.38798 * 119.99965 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00514 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99804 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46921 * 90.00465 * 21 19 17 23 23 H 1.48500 * 109.47081 * 209.99981 * 21 19 17 24 24 H 1.48498 * 109.47192 * 330.00275 * 21 19 17 25 25 C 1.53040 * 109.53662 * 298.63203 * 11 10 9 26 26 C 1.46957 * 120.65462 * 359.81587 * 8 6 5 27 27 H 1.08006 * 119.99445 * 0.02562 * 1 2 3 28 28 H 1.07993 * 120.00489 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46823 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47047 * 299.99181 * 3 2 1 31 31 H 1.08999 * 109.47286 * 60.00023 * 3 2 1 32 32 H 1.08997 * 109.47157 * 335.00130 * 4 2 1 33 33 H 1.09002 * 109.46799 * 215.00203 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99516 * 5 4 2 35 35 H 1.08999 * 109.46626 * 299.99893 * 5 4 2 36 36 H 1.09002 * 109.58861 * 6.60251 * 9 8 6 37 37 H 1.08996 * 109.58519 * 246.32142 * 9 8 6 38 38 H 1.09003 * 109.49294 * 174.51508 * 10 9 8 39 39 H 1.09001 * 109.49969 * 294.57596 * 10 9 8 40 40 H 1.08994 * 109.45986 * 58.65006 * 11 10 9 41 41 H 0.97003 * 120.00330 * 24.99965 * 12 11 10 42 42 H 1.08998 * 109.47140 * 299.98960 * 15 13 12 43 43 H 1.09002 * 109.47115 * 59.99688 * 15 13 12 44 44 H 0.96996 * 120.00131 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.49643 * 181.31582 * 25 11 10 46 46 H 1.08996 * 109.49892 * 301.41776 * 25 11 10 47 47 H 1.09001 * 109.46843 * 113.75468 * 26 8 6 48 48 H 1.08997 * 109.71602 * 353.46961 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3053 0.0006 5 6 2.4273 -1.6847 -1.4363 6 6 3.1813 -2.9895 -1.4356 7 8 3.4058 -3.5596 -0.3890 8 7 3.6060 -3.5229 -2.5982 9 6 4.3417 -4.7946 -2.6137 10 6 3.6444 -5.7593 -3.5781 11 6 3.5098 -5.0944 -4.9500 12 7 2.8729 -6.0264 -5.8836 13 6 3.0869 -5.9045 -7.2087 14 8 3.8066 -5.0229 -7.6281 15 6 2.4312 -6.8629 -8.1692 16 16 2.9098 -6.4413 -9.8632 17 6 2.0271 -7.6830 -10.7484 18 1 1.4231 -8.4012 -10.2137 19 6 2.1087 -7.7387 -12.1329 20 7 1.4497 -8.6666 -12.7943 21 14 3.1539 -6.4969 -13.0576 22 1 4.5349 -7.0231 -13.2032 23 1 2.5695 -6.2619 -14.4024 24 1 3.1881 -5.2188 -12.3024 25 6 2.6528 -3.8326 -4.8253 26 6 3.3383 -2.8464 -3.8750 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5400 -0.9352 -0.0004 29 1 3.1352 1.1057 0.0005 30 1 1.8003 1.8765 -0.8900 31 1 1.8003 1.8766 0.8900 32 1 1.4384 -2.0853 0.4352 33 1 2.9740 -1.1988 0.5900 34 1 3.0523 -0.9045 -1.8708 35 1 1.5167 -1.7910 -2.0257 36 1 4.3517 -5.2233 -1.6116 37 1 5.3648 -4.6208 -2.9469 38 1 4.2354 -6.6704 -3.6718 39 1 2.6546 -6.0056 -3.1939 40 1 4.4986 -4.8264 -5.3222 41 1 2.2970 -6.7313 -5.5482 42 1 2.7517 -7.8799 -7.9432 43 1 1.3480 -6.7927 -8.0698 44 1 1.5065 -8.7052 -13.7618 45 1 2.5379 -3.3724 -5.8066 46 1 1.6721 -4.0966 -4.4296 47 1 4.2787 -2.5114 -4.3128 48 1 2.6874 -1.9884 -3.7072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737057391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:17 Heat of formation + Delta-G solvation = -72.944132 kcal Electronic energy + Delta-G solvation = -26526.511240 eV Core-core repulsion = 22707.305663 eV Total energy + Delta-G solvation = -3819.205577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.73176 -39.49726 -37.71572 -36.70950 -34.72306 -32.47927 -32.43962 -31.55352 -30.98231 -29.06868 -27.70661 -25.86462 -25.59755 -24.34533 -23.44395 -21.24594 -20.47732 -19.33165 -18.88992 -17.90006 -17.45258 -16.51787 -16.33013 -16.26337 -15.96247 -15.21955 -15.03909 -14.98281 -14.87675 -14.40358 -14.22100 -14.01598 -13.91343 -13.63010 -13.45953 -13.36802 -12.85769 -12.82577 -12.73161 -12.37784 -12.25056 -12.19062 -12.13891 -11.66101 -11.44868 -11.30472 -11.29898 -11.28752 -11.03779 -10.94411 -10.61796 -10.14815 -9.88935 -9.61207 -9.43070 -9.09619 -9.03756 -9.00599 -8.54003 -6.95294 -6.31610 -4.03751 1.77309 2.27386 2.60849 2.72254 2.89822 3.25583 3.31100 3.47382 3.60497 4.03429 4.30159 4.32887 4.43095 4.45724 4.58475 4.62421 4.68364 4.70214 4.76387 4.84003 4.90276 5.04005 5.06069 5.07450 5.11486 5.17347 5.22408 5.26497 5.42353 5.44723 5.48093 5.48890 5.52430 5.56355 5.59958 5.71897 5.72689 5.77551 5.95232 5.98150 6.15033 6.22220 6.45057 6.48113 6.99947 7.54551 7.81053 7.91338 8.38878 8.42322 9.14425 10.77599 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021366 B = 0.001828 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.198398 B =15314.794918 C =15909.181289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 C -0.122 4.122 4 C -0.070 4.070 5 C -0.134 4.134 6 C 0.516 3.484 7 O -0.543 6.543 8 N -0.614 5.614 9 C 0.115 3.885 10 C -0.141 4.141 11 C 0.148 3.852 12 N -0.733 5.733 13 C 0.532 3.468 14 O -0.519 6.519 15 C -0.125 4.125 16 S -0.141 6.141 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.147 4.147 26 C 0.109 3.891 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.400 0.600 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.256 15.090 26.178 30.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.127 4.127 3 C -0.178 4.178 4 C -0.108 4.108 5 C -0.174 4.174 6 C 0.305 3.695 7 O -0.421 6.421 8 N -0.348 5.348 9 C -0.008 4.008 10 C -0.180 4.180 11 C 0.042 3.958 12 N -0.387 5.387 13 C 0.319 3.681 14 O -0.393 6.393 15 C -0.276 4.276 16 S 0.085 5.915 17 C -0.670 4.670 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.186 4.186 26 C -0.014 4.014 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.234 0.766 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.542 16.168 25.845 30.591 hybrid contribution -0.914 -1.116 -0.205 1.457 sum 1.628 15.052 25.640 29.776 Atomic orbital electron populations 1.23713 0.95303 1.01990 1.02221 1.21773 0.95418 0.95647 0.99838 1.20877 1.00149 0.94684 1.02131 1.20454 1.00859 0.94361 0.95124 1.21675 1.01231 0.95026 0.99485 1.20738 0.78809 0.86943 0.83016 1.90693 1.57323 1.63008 1.31061 1.48215 1.56418 1.23549 1.06608 1.21537 0.94812 0.83253 1.01198 1.22207 1.02390 0.99109 0.94291 1.20845 0.97569 0.88935 0.88411 1.46050 1.51989 1.34598 1.06043 1.20300 0.80677 0.84980 0.82190 1.90695 1.36961 1.34343 1.77346 1.23290 1.03767 1.01330 0.99186 1.84770 1.66088 1.45008 0.95639 1.22315 1.33850 1.16281 0.94552 0.89399 1.24716 0.94744 0.95284 0.96561 1.69934 1.40687 1.32622 1.08377 0.86733 0.81028 0.83640 0.80423 1.19205 1.19930 1.15944 1.22342 0.99503 0.96290 1.00509 1.21775 1.01215 0.95342 0.83087 0.88439 0.88403 0.91906 0.91478 0.91548 0.90580 0.90467 0.88687 0.88675 0.88491 0.91035 0.89721 0.90872 0.89155 0.76645 0.88511 0.88478 0.91920 0.89489 0.91200 0.90613 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.19 13.93 29.02 0.40 -0.79 16 2 C -0.13 -0.80 5.31 -101.06 -0.54 -1.33 16 3 C -0.12 -0.61 10.05 36.00 0.36 -0.25 16 4 C -0.07 -0.50 4.58 -27.88 -0.13 -0.63 16 5 C -0.13 -0.87 4.03 -27.88 -0.11 -0.98 16 6 C 0.52 4.80 7.70 -10.98 -0.08 4.71 16 7 O -0.54 -6.94 15.39 5.56 0.09 -6.85 16 8 N -0.61 -5.00 2.98 -172.77 -0.51 -5.51 16 9 C 0.11 0.92 6.43 -3.71 -0.02 0.90 16 10 C -0.14 -1.07 5.55 -26.61 -0.15 -1.22 16 11 C 0.15 1.44 2.42 -67.89 -0.16 1.28 16 12 N -0.73 -8.39 5.08 -53.77 -0.27 -8.66 16 13 C 0.53 8.77 7.81 -10.99 -0.09 8.68 16 14 O -0.52 -10.40 15.53 5.55 0.09 -10.31 16 15 C -0.13 -2.31 6.16 36.01 0.22 -2.09 16 16 S -0.14 -3.49 18.55 -107.50 -1.99 -5.49 16 17 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 18 H 0.09 2.61 8.03 -52.48 -0.42 2.18 16 19 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 20 N -0.88 -26.28 13.97 55.49 0.78 -25.51 16 21 Si 0.86 21.49 27.74 -169.99 -4.71 16.77 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 25 C -0.15 -1.29 5.65 -26.63 -0.15 -1.44 16 26 C 0.11 0.76 6.33 -3.71 -0.02 0.73 16 27 H 0.10 0.51 8.05 -52.48 -0.42 0.09 16 28 H 0.10 0.58 7.99 -52.49 -0.42 0.16 16 29 H 0.06 0.30 8.00 -51.92 -0.42 -0.12 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.62 7.94 -51.93 -0.41 0.21 16 33 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.09 0.48 7.95 -51.93 -0.41 0.07 16 35 H 0.09 0.53 7.69 -51.93 -0.40 0.13 16 36 H 0.10 0.87 7.01 -51.93 -0.36 0.51 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 1.05 7.58 -51.93 -0.39 0.65 16 41 H 0.40 3.57 8.60 -40.82 -0.35 3.22 16 42 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.10 1.67 8.14 -51.91 -0.42 1.25 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.09 0.46 5.95 -51.93 -0.31 0.15 16 LS Contribution 404.28 15.07 6.09 6.09 Total: -1.00 -34.81 404.28 -8.84 -43.65 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -8.12 Total: 0.13 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.25 Total: -4.30 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: -0.01 Total: -39.68 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: 0.17 Total: -17.17 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.77 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.81 -8.84 -43.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737057391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.295 kcal (2) G-P(sol) polarization free energy of solvation -34.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds