Wall clock time and date at job start Sat Apr 11 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00115 * 2 1 4 4 C 1.53006 * 109.46990 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47355 * 239.99662 * 3 2 1 6 6 C 1.50702 * 109.47053 * 119.99399 * 3 2 1 7 7 O 1.21280 * 120.00009 * 0.02562 * 6 3 2 8 8 N 1.34774 * 119.99889 * 179.97438 * 6 3 2 9 9 C 1.46505 * 120.00190 * 180.02562 * 8 6 3 10 10 H 1.08999 * 109.46653 * 34.99978 * 9 8 6 11 11 C 1.52995 * 109.47041 * 155.00108 * 9 8 6 12 12 N 1.46503 * 109.47354 * 304.99803 * 11 9 8 13 13 C 1.34774 * 119.99841 * 180.02562 * 12 11 9 14 14 O 1.21275 * 120.00406 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99866 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.47273 * 180.02562 * 15 13 12 17 17 C 1.76197 * 99.99950 * 180.02562 * 16 15 13 18 18 H 1.08007 * 120.00249 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99895 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00088 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99936 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46643 * 90.00029 * 21 19 17 23 23 H 1.48492 * 109.47155 * 210.00208 * 21 19 17 24 24 H 1.48498 * 109.47176 * 330.00773 * 21 19 17 25 25 C 1.53003 * 109.46936 * 275.00149 * 9 8 6 26 26 C 1.53001 * 117.51964 * 356.28241 * 25 9 8 27 27 C 1.52999 * 60.00190 * 107.47982 * 26 25 9 28 28 H 1.07996 * 120.00303 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00146 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00146 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.46723 * 179.97438 * 4 3 2 32 32 H 1.08992 * 109.47072 * 299.99890 * 4 3 2 33 33 H 1.09007 * 109.46563 * 60.00026 * 4 3 2 34 34 H 1.08998 * 109.46714 * 300.00123 * 5 3 2 35 35 H 1.09001 * 109.47166 * 59.99537 * 5 3 2 36 36 H 1.09000 * 109.46980 * 179.97438 * 5 3 2 37 37 H 0.97005 * 120.00049 * 0.02562 * 8 6 3 38 38 H 1.09003 * 109.47256 * 65.00108 * 11 9 8 39 39 H 1.09006 * 109.46840 * 184.99850 * 11 9 8 40 40 H 0.97000 * 119.99697 * 0.02562 * 12 11 9 41 41 H 1.08994 * 109.47078 * 300.00379 * 15 13 12 42 42 H 1.09004 * 109.46731 * 59.99711 * 15 13 12 43 43 H 0.96996 * 119.99953 * 180.02562 * 20 19 17 44 44 H 1.09002 * 115.54973 * 210.58024 * 25 9 8 45 45 H 1.09001 * 117.49733 * 214.97413 * 26 25 9 46 46 H 1.08995 * 117.49577 * 359.97438 * 26 25 9 47 47 H 1.09004 * 117.50150 * 252.51496 * 27 26 25 48 48 H 1.09004 * 117.49681 * 107.48417 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 -0.0006 5 6 2.9432 1.3861 -1.2492 6 6 2.9298 1.3850 1.2306 7 8 2.9351 0.4718 2.0287 8 7 3.6993 2.4707 1.4436 9 6 4.5420 2.5482 2.6396 10 1 4.9173 1.5546 2.8844 11 6 5.7201 3.4872 2.3734 12 7 6.4410 3.0400 1.1790 13 6 7.5231 3.7198 0.7510 14 8 7.9005 4.7015 1.3548 15 6 8.2643 3.2601 -0.4780 16 16 9.6591 4.3701 -0.7920 17 6 10.3268 3.6204 -2.2400 18 1 9.8623 2.7378 -2.6544 19 6 11.4497 4.1642 -2.8481 20 7 12.0162 5.2395 -2.3429 21 14 12.1581 3.3690 -4.3829 22 1 11.5238 3.9644 -5.5865 23 1 13.6239 3.6017 -4.4294 24 1 11.8893 1.9089 -4.3529 25 6 3.7167 3.0846 3.8109 26 6 2.2741 3.5065 3.5248 27 6 2.5545 2.2233 4.3093 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.6142 3.4120 -0.0002 32 1 0.4430 2.4101 -0.8908 33 1 0.4422 2.4104 0.8892 34 1 3.6514 0.5576 -1.2491 35 1 2.3166 1.3283 -2.1392 36 1 3.4878 2.3303 -1.2493 37 1 3.6953 3.2009 0.8050 38 1 5.3492 4.5000 2.2159 39 1 6.3942 3.4762 3.2300 40 1 6.1394 2.2545 0.6962 41 1 8.6347 2.2471 -0.3212 42 1 7.5901 3.2718 -1.3345 43 1 12.8007 5.6197 -2.7681 44 1 4.2714 3.6593 4.5526 45 1 1.8799 4.3589 4.0782 46 1 1.9129 3.4024 2.5017 47 1 2.3776 1.2746 3.8025 48 1 2.3447 2.2314 5.3790 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737376241.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:32 Heat of formation + Delta-G solvation = -55.333383 kcal Electronic energy + Delta-G solvation = -27587.483820 eV Core-core repulsion = 23769.041902 eV Total energy + Delta-G solvation = -3818.441918 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.78072 -40.53931 -38.79602 -37.10184 -36.16526 -34.58576 -34.50912 -32.15180 -31.26485 -29.46265 -28.31275 -27.64779 -25.22321 -24.39916 -23.22835 -22.45265 -21.71517 -20.95399 -19.94710 -19.49815 -18.11979 -17.78291 -17.59476 -17.16530 -17.03492 -16.86688 -16.54715 -16.06237 -15.74881 -15.55376 -15.07081 -15.00059 -14.74310 -14.57387 -14.32247 -13.93306 -13.41568 -13.34854 -13.33429 -13.15502 -13.12665 -13.03244 -12.87972 -12.81682 -12.70694 -12.60052 -12.30261 -12.11070 -11.73124 -11.64523 -11.34969 -11.13369 -11.04943 -10.90336 -10.74587 -10.29345 -10.26278 -10.17352 -10.07316 -8.64948 -8.33870 -6.11274 1.27342 1.31272 1.42927 1.47394 1.57249 1.60202 1.61863 2.13203 2.26112 2.29725 2.92239 3.00464 3.32600 3.49933 3.59327 3.77378 3.81847 3.98250 4.00739 4.04109 4.11126 4.21473 4.24942 4.32340 4.46277 4.47691 4.52460 4.66023 4.68383 4.77561 4.81230 4.83869 4.86229 4.89932 5.00179 5.07746 5.20237 5.26414 5.30194 5.34965 5.35778 5.43058 5.45811 5.71569 5.83717 6.20768 6.43365 6.49265 7.07864 7.20862 7.22159 8.75183 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014002 B = 0.002497 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.226236 B =11210.707546 C =12722.394129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.144 4.144 3 C -0.050 4.050 4 C -0.145 4.145 5 C -0.140 4.140 6 C 0.530 3.470 7 O -0.563 6.563 8 N -0.714 5.714 9 C 0.178 3.822 10 H 0.086 0.914 11 C 0.121 3.879 12 N -0.712 5.712 13 C 0.537 3.463 14 O -0.561 6.561 15 C -0.131 4.131 16 S -0.148 6.148 17 C -0.545 4.545 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.259 1.259 25 C -0.169 4.169 26 C -0.166 4.166 27 C -0.189 4.189 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.412 0.588 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.412 0.588 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.271 0.729 44 H 0.123 0.877 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.802 -8.267 5.794 28.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.162 4.162 3 C -0.053 4.053 4 C -0.202 4.202 5 C -0.198 4.198 6 C 0.317 3.683 7 O -0.441 6.441 8 N -0.367 5.367 9 C 0.073 3.927 10 H 0.104 0.896 11 C -0.003 4.003 12 N -0.367 5.367 13 C 0.323 3.677 14 O -0.438 6.438 15 C -0.282 4.282 16 S 0.079 5.921 17 C -0.693 4.693 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.183 1.183 25 C -0.188 4.188 26 C -0.203 4.203 27 C -0.226 4.226 28 H 0.122 0.878 29 H 0.134 0.866 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.250 0.750 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.248 0.752 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.141 0.859 45 H 0.121 0.879 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -26.039 -7.165 7.377 27.997 hybrid contribution 0.276 -1.498 -1.680 2.268 sum -25.764 -8.663 5.697 27.772 Atomic orbital electron populations 1.24145 0.95576 1.03173 0.99381 1.22527 0.96139 0.96573 1.00992 1.19899 0.95748 0.96307 0.93362 1.22018 0.98628 0.95950 1.03595 1.21876 0.99293 1.03000 0.95601 1.20811 0.79332 0.81127 0.87000 1.90644 1.66568 1.39055 1.47874 1.46058 1.44406 1.21276 1.24930 1.20514 0.88508 0.99257 0.84455 0.89572 1.21610 0.92220 0.98345 0.88082 1.45691 1.28994 1.31958 1.30025 1.19979 0.80262 0.82605 0.84827 1.90706 1.67185 1.27823 1.58120 1.23376 1.01222 1.04420 0.99200 1.85558 1.30850 1.39234 1.36425 1.23197 1.16723 1.16327 1.13079 0.89974 1.26101 0.96092 0.95394 1.01526 1.70174 1.21398 1.21838 1.41323 0.84979 0.77195 0.78863 0.77112 1.19213 1.20445 1.18307 1.22624 0.91095 1.04921 1.00207 1.23030 0.97031 0.98433 1.01817 1.23230 1.02465 0.96348 1.00573 0.87758 0.86602 0.88307 0.90575 0.89611 0.92007 0.92551 0.90101 0.90600 0.75038 0.90275 0.90310 0.75162 0.87681 0.86948 0.92019 0.85932 0.87939 0.88436 0.88577 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.29 13.70 67.79 0.93 -1.36 16 2 C -0.14 -2.18 8.00 25.65 0.21 -1.97 16 3 C -0.05 -0.63 0.84 -53.67 -0.05 -0.68 16 4 C -0.14 -1.23 6.59 71.98 0.47 -0.76 16 5 C -0.14 -1.51 8.35 71.98 0.60 -0.91 16 6 C 0.53 8.87 5.16 87.66 0.45 9.32 16 7 O -0.56 -13.72 13.02 -3.03 -0.04 -13.76 16 8 N -0.71 -9.53 2.96 -442.53 -1.31 -10.84 16 9 C 0.18 2.84 2.57 44.99 0.12 2.95 16 10 H 0.09 1.68 7.58 -2.39 -0.02 1.66 16 11 C 0.12 2.31 5.19 86.38 0.45 2.76 16 12 N -0.71 -15.97 5.39 -463.06 -2.50 -18.46 16 13 C 0.54 18.35 7.85 87.66 0.69 19.03 16 14 O -0.56 -24.36 15.86 -3.01 -0.05 -24.41 16 15 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 16 S -0.15 -7.99 20.57 -56.49 -1.16 -9.15 16 17 C -0.55 -30.54 9.50 67.95 0.65 -29.90 16 18 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 19 C 0.01 0.77 5.49 84.86 0.47 1.23 16 20 N -0.91 -55.28 13.22 21.65 0.29 -54.99 16 21 Si 1.00 42.98 29.55 68.60 2.03 45.01 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 25 C -0.17 -2.56 5.73 -10.79 -0.06 -2.62 16 26 C -0.17 -2.31 9.68 30.59 0.30 -2.02 16 27 C -0.19 -3.26 9.85 30.60 0.30 -2.96 16 28 H 0.10 1.14 8.06 -2.91 -0.02 1.12 16 29 H 0.12 1.09 5.69 -2.91 -0.02 1.07 16 30 H 0.10 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.08 0.48 7.56 -2.39 -0.02 0.46 16 32 H 0.09 0.55 7.50 -2.39 -0.02 0.53 16 33 H 0.06 0.59 7.49 -2.38 -0.02 0.57 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.66 7.56 -2.39 -0.02 0.64 16 37 H 0.41 4.21 7.44 -92.70 -0.69 3.52 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.41 7.29 8.14 -92.71 -0.75 6.54 16 41 H 0.10 3.64 8.14 -2.40 -0.02 3.62 16 42 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 43 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 44 H 0.12 1.68 8.08 -2.39 -0.02 1.66 16 45 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.10 1.28 5.96 -2.39 -0.01 1.27 16 47 H 0.10 2.14 5.26 -2.39 -0.01 2.13 16 48 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -76.73 402.17 2.74 -73.99 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: -0.47 Total: 24.98 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 5.95 Total: -12.37 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -3.52 Total: -84.30 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -0.09 Total: -38.17 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.15 kcal Total: -76.73 2.74 -73.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737376241.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.657 kcal (2) G-P(sol) polarization free energy of solvation -76.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds