Wall clock time and date at job start Sat Apr 11 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47303 * 2 1 4 4 C 1.53001 * 109.46768 * 59.99665 * 3 2 1 5 5 C 1.52995 * 109.47028 * 299.99800 * 3 2 1 6 6 C 1.50698 * 109.47004 * 179.97438 * 3 2 1 7 7 O 1.21283 * 120.00472 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99538 * 179.97438 * 6 3 2 9 9 C 1.46499 * 119.99665 * 179.72653 * 8 6 3 10 10 H 1.09004 * 115.51657 * 350.86065 * 9 8 6 11 11 C 1.53005 * 117.44119 * 205.44768 * 9 8 6 12 12 H 1.08995 * 119.54423 * 4.11354 * 11 9 8 13 13 C 1.54392 * 118.12217 * 159.21606 * 11 9 8 14 14 N 1.51690 * 102.89994 * 88.03994 * 13 11 9 15 15 C 1.34781 * 127.61368 * 140.53472 * 14 13 11 16 16 O 1.21274 * 120.00084 * 179.72633 * 15 14 13 17 17 C 1.50701 * 119.99512 * 359.73322 * 15 14 13 18 18 S 1.81002 * 109.46673 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99961 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99863 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00013 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00175 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99962 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47208 * 59.99758 * 23 21 19 25 25 H 1.48499 * 109.47210 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46873 * 299.99786 * 23 21 19 27 27 C 1.48149 * 104.55001 * 320.31792 * 14 13 11 28 28 C 1.52997 * 117.44547 * 136.27838 * 9 8 6 29 29 H 1.09001 * 119.53604 * 355.88198 * 28 9 8 30 30 H 1.09001 * 109.46719 * 60.00219 * 1 2 3 31 31 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47540 * 300.00020 * 1 2 3 33 33 H 1.09000 * 109.47250 * 239.99315 * 2 1 3 34 34 H 1.09007 * 109.46897 * 120.00194 * 2 1 3 35 35 H 1.09001 * 109.47038 * 180.02562 * 4 3 2 36 36 H 1.08995 * 109.47475 * 299.99715 * 4 3 2 37 37 H 1.09001 * 109.47406 * 60.00127 * 4 3 2 38 38 H 1.08995 * 109.47139 * 300.00141 * 5 3 2 39 39 H 1.09003 * 109.47199 * 59.99964 * 5 3 2 40 40 H 1.09001 * 109.46983 * 179.97438 * 5 3 2 41 41 H 0.97001 * 120.00485 * 0.02562 * 8 6 3 42 42 H 1.09002 * 110.40725 * 205.97372 * 13 11 9 43 43 H 1.09007 * 110.40683 * 328.40174 * 13 11 9 44 44 H 1.08997 * 109.46993 * 299.99096 * 17 15 14 45 45 H 1.08989 * 109.47447 * 59.99622 * 17 15 14 46 46 H 0.96999 * 119.99936 * 180.02562 * 22 21 19 47 47 H 1.09004 * 110.40217 * 281.02103 * 27 14 13 48 48 H 1.09001 * 110.50819 * 158.64284 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1637 1.2492 5 6 1.5301 2.1637 -1.2492 6 6 3.5470 1.4424 0.0006 7 8 4.1535 0.3921 0.0006 8 7 4.2209 2.6096 0.0002 9 6 5.6858 2.6096 0.0069 10 1 6.1546 1.6388 0.1682 11 6 6.3883 3.8375 0.5899 12 1 5.7946 4.6339 1.0385 13 6 7.8514 3.6846 1.0588 14 7 8.6431 3.9738 -0.2024 15 6 9.7922 4.6698 -0.3108 16 8 10.3139 4.8136 -1.3961 17 6 10.4287 5.2691 0.9166 18 16 11.9478 6.1341 0.4472 19 6 12.4668 6.7198 2.0259 20 1 11.8775 6.4998 2.9039 21 6 13.6334 7.4628 2.1412 22 7 14.3524 7.7296 1.0714 23 14 14.1840 8.0831 3.8150 24 1 14.4025 6.9289 4.7234 25 1 15.4502 8.8451 3.6686 26 1 13.1366 8.9691 4.3836 27 6 7.8735 3.3161 -1.2840 28 6 6.3953 3.5880 -0.9312 29 1 5.8067 4.1987 -1.6159 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.8929 3.1915 1.2490 36 1 0.4400 2.1638 1.2492 37 1 1.8932 1.6499 2.1393 38 1 1.8934 1.6498 -2.1391 39 1 0.4401 2.1637 -1.2493 40 1 1.8931 3.1915 -1.2490 41 1 3.7359 3.4497 -0.0001 42 1 8.0817 4.4188 1.8308 43 1 8.0284 2.6746 1.4286 44 1 9.7366 5.9738 1.3775 45 1 10.6667 4.4768 1.6262 46 1 15.1679 8.2486 1.1521 47 1 8.0711 2.2441 -1.2932 48 1 8.1208 3.7556 -2.2503 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737538645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:49 Heat of formation + Delta-G solvation = -46.030619 kcal Electronic energy + Delta-G solvation = -26589.048585 eV Core-core repulsion = 22771.010065 eV Total energy + Delta-G solvation = -3818.038520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.96740 -39.96012 -38.13578 -36.73546 -34.87712 -32.53409 -32.42836 -30.53074 -29.69598 -28.23926 -27.95682 -25.87228 -25.46747 -25.03000 -22.55368 -21.47133 -20.44911 -19.55372 -19.24453 -17.74684 -17.46929 -17.11909 -16.43464 -15.65736 -15.56184 -15.21937 -15.12656 -14.80776 -14.80069 -14.49366 -13.90652 -13.87333 -13.50973 -13.31549 -13.18796 -13.08995 -12.79071 -12.62458 -12.54295 -12.48157 -12.27786 -12.02518 -11.89591 -11.86156 -11.77377 -11.20592 -11.14869 -11.10244 -11.04937 -11.04320 -10.78563 -10.45589 -10.08957 -9.83591 -9.38901 -9.17144 -9.06510 -8.66690 -8.24543 -6.51030 -6.21913 -3.92911 2.15323 2.47908 2.84275 3.06253 3.23002 3.23992 3.27308 3.28736 3.57016 4.02502 4.13666 4.19184 4.23993 4.28546 4.34980 4.47657 4.59908 4.74486 4.81943 4.86807 4.94808 5.01436 5.02783 5.04412 5.13067 5.22470 5.24294 5.26739 5.41458 5.44123 5.46125 5.48184 5.50249 5.58231 5.67216 5.68937 5.71714 5.79124 5.80933 5.89331 5.91623 6.07077 6.11732 6.23842 7.01861 7.58471 7.63490 7.78570 8.34413 8.53687 9.23067 10.85445 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027951 B = 0.001758 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.499133 B =15920.773563 C =16495.552430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.101 4.101 3 C -0.081 4.081 4 C -0.144 4.144 5 C -0.144 4.144 6 C 0.528 3.472 7 O -0.532 6.532 8 N -0.700 5.700 9 C 0.117 3.883 10 H 0.139 0.861 11 C -0.182 4.182 12 H 0.123 0.877 13 C 0.133 3.867 14 N -0.634 5.634 15 C 0.555 3.445 16 O -0.515 6.515 17 C -0.147 4.147 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.137 3.863 28 C -0.178 4.178 29 H 0.122 0.878 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.402 0.598 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.073 0.927 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.858 -12.030 -0.404 33.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.139 4.139 3 C -0.084 4.084 4 C -0.201 4.201 5 C -0.201 4.201 6 C 0.315 3.685 7 O -0.407 6.407 8 N -0.349 5.349 9 C 0.010 3.990 10 H 0.157 0.843 11 C -0.202 4.202 12 H 0.141 0.859 13 C 0.011 3.989 14 N -0.372 5.372 15 C 0.344 3.656 16 O -0.389 6.389 17 C -0.297 4.297 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 C 0.014 3.986 28 C -0.199 4.199 29 H 0.140 0.860 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.237 0.763 42 H 0.110 0.890 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.091 0.909 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -29.345 -12.425 -2.115 31.937 hybrid contribution -0.544 0.857 2.363 2.571 sum -29.889 -11.568 0.248 32.050 Atomic orbital electron populations 1.21922 0.95352 1.02019 1.02044 1.21367 0.95544 0.93391 1.03566 1.20834 0.90753 0.98820 0.98005 1.21938 1.02293 0.99873 0.96029 1.21936 1.02287 0.99865 0.96042 1.20640 0.89821 0.83234 0.74827 1.90717 1.70218 1.31234 1.48579 1.45338 1.05361 1.09097 1.75109 1.21714 0.79985 0.96345 1.00930 0.84303 1.24094 0.97823 1.01141 0.97156 0.85921 1.22406 0.86718 1.02148 0.87675 1.50110 1.24144 1.54690 1.08264 1.19998 0.78162 0.76539 0.90866 1.90716 1.61082 1.58274 1.28865 1.23506 1.04640 1.03446 0.98114 1.85413 1.19008 1.65627 1.13281 1.22819 1.12123 1.39825 0.93685 0.90970 1.24989 0.95387 0.95326 0.97822 1.70009 1.14828 1.36977 1.28432 0.86224 0.78015 0.78868 0.82392 1.19923 1.20788 1.19956 1.21571 0.86758 0.97571 0.92686 1.24232 0.97719 1.04534 0.93383 0.85987 0.92336 0.92431 0.92327 0.91149 0.91150 0.92169 0.90827 0.91855 0.91856 0.90821 0.92185 0.76287 0.88953 0.89956 0.89296 0.89240 0.92111 0.90933 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 9.21 37.16 0.34 -0.32 16 2 C -0.10 -0.63 4.28 -26.73 -0.11 -0.75 16 3 C -0.08 -0.45 0.64 -155.66 -0.10 -0.55 16 4 C -0.14 -0.59 8.02 37.16 0.30 -0.29 16 5 C -0.14 -0.60 8.02 37.16 0.30 -0.30 16 6 C 0.53 4.51 6.48 -10.99 -0.07 4.44 16 7 O -0.53 -6.73 15.55 5.55 0.09 -6.64 16 8 N -0.70 -4.76 5.35 -53.80 -0.29 -5.05 16 9 C 0.12 0.97 5.97 -67.93 -0.41 0.56 16 10 H 0.14 1.38 7.40 -51.93 -0.38 0.99 16 11 C -0.18 -1.50 6.96 -89.29 -0.62 -2.12 16 12 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 13 C 0.13 1.38 6.96 -0.37 0.00 1.38 16 14 N -0.63 -9.13 3.39 -166.26 -0.56 -9.69 16 15 C 0.56 10.81 7.94 -10.98 -0.09 10.72 16 16 O -0.52 -12.10 16.13 5.56 0.09 -12.01 16 17 C -0.15 -3.01 5.17 36.01 0.19 -2.82 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 23 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 27 C 0.14 1.64 6.86 -2.41 -0.02 1.62 16 28 C -0.18 -1.59 7.05 -89.30 -0.63 -2.22 16 29 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.21 6.43 -51.93 -0.33 -0.12 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.21 6.43 -51.93 -0.33 -0.12 16 33 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.06 0.19 7.57 -51.93 -0.39 -0.21 16 36 H 0.07 0.22 6.43 -51.93 -0.33 -0.11 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.23 6.43 -51.93 -0.33 -0.11 16 40 H 0.06 0.19 7.56 -51.93 -0.39 -0.20 16 41 H 0.40 1.76 7.66 -40.82 -0.31 1.45 16 42 H 0.09 0.92 7.41 -51.93 -0.38 0.54 16 43 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 44 H 0.09 1.68 7.98 -51.92 -0.41 1.27 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 46 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.09 1.19 7.88 -51.93 -0.41 0.78 16 LS Contribution 400.26 15.07 6.03 6.03 Total: -1.00 -36.26 400.26 -9.66 -45.93 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.79 Total: -1.98 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -0.73 Total: -3.63 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: -0.12 Total: -40.19 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.18 Total: -18.65 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.26 -9.66 -45.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737538645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.102 kcal (2) G-P(sol) polarization free energy of solvation -36.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds