Wall clock time and date at job start Sat Apr 11 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47303 * 2 1 4 4 C 1.53001 * 109.46768 * 59.99665 * 3 2 1 5 5 C 1.52995 * 109.47028 * 299.99800 * 3 2 1 6 6 C 1.50698 * 109.47004 * 179.97438 * 3 2 1 7 7 O 1.21283 * 120.00472 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99538 * 179.97438 * 6 3 2 9 9 C 1.46499 * 119.99665 * 179.72653 * 8 6 3 10 10 H 1.09004 * 115.51657 * 350.86065 * 9 8 6 11 11 C 1.53005 * 117.44119 * 205.44768 * 9 8 6 12 12 H 1.08995 * 119.54423 * 4.11354 * 11 9 8 13 13 C 1.54392 * 118.12217 * 159.21606 * 11 9 8 14 14 N 1.51690 * 102.89994 * 88.03994 * 13 11 9 15 15 C 1.34781 * 127.61368 * 140.53472 * 14 13 11 16 16 O 1.21274 * 120.00084 * 179.72633 * 15 14 13 17 17 C 1.50701 * 119.99512 * 359.73322 * 15 14 13 18 18 S 1.81002 * 109.46673 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99961 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99863 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00013 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00175 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99962 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47208 * 59.99758 * 23 21 19 25 25 H 1.48499 * 109.47210 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46873 * 299.99786 * 23 21 19 27 27 C 1.48149 * 104.55001 * 320.31792 * 14 13 11 28 28 C 1.52997 * 117.44547 * 136.27838 * 9 8 6 29 29 H 1.09001 * 119.53604 * 355.88198 * 28 9 8 30 30 H 1.09001 * 109.46719 * 60.00219 * 1 2 3 31 31 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47540 * 300.00020 * 1 2 3 33 33 H 1.09000 * 109.47250 * 239.99315 * 2 1 3 34 34 H 1.09007 * 109.46897 * 120.00194 * 2 1 3 35 35 H 1.09001 * 109.47038 * 180.02562 * 4 3 2 36 36 H 1.08995 * 109.47475 * 299.99715 * 4 3 2 37 37 H 1.09001 * 109.47406 * 60.00127 * 4 3 2 38 38 H 1.08995 * 109.47139 * 300.00141 * 5 3 2 39 39 H 1.09003 * 109.47199 * 59.99964 * 5 3 2 40 40 H 1.09001 * 109.46983 * 179.97438 * 5 3 2 41 41 H 0.97001 * 120.00485 * 0.02562 * 8 6 3 42 42 H 1.09002 * 110.40725 * 205.97372 * 13 11 9 43 43 H 1.09007 * 110.40683 * 328.40174 * 13 11 9 44 44 H 1.08997 * 109.46993 * 299.99096 * 17 15 14 45 45 H 1.08989 * 109.47447 * 59.99622 * 17 15 14 46 46 H 0.96999 * 119.99936 * 180.02562 * 22 21 19 47 47 H 1.09004 * 110.40217 * 281.02103 * 27 14 13 48 48 H 1.09001 * 110.50819 * 158.64284 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1637 1.2492 5 6 1.5301 2.1637 -1.2492 6 6 3.5470 1.4424 0.0006 7 8 4.1535 0.3921 0.0006 8 7 4.2209 2.6096 0.0002 9 6 5.6858 2.6096 0.0069 10 1 6.1546 1.6388 0.1682 11 6 6.3883 3.8375 0.5899 12 1 5.7946 4.6339 1.0385 13 6 7.8514 3.6846 1.0588 14 7 8.6431 3.9738 -0.2024 15 6 9.7922 4.6698 -0.3108 16 8 10.3139 4.8136 -1.3961 17 6 10.4287 5.2691 0.9166 18 16 11.9478 6.1341 0.4472 19 6 12.4668 6.7198 2.0259 20 1 11.8775 6.4998 2.9039 21 6 13.6334 7.4628 2.1412 22 7 14.3524 7.7296 1.0714 23 14 14.1840 8.0831 3.8150 24 1 14.4025 6.9289 4.7234 25 1 15.4502 8.8451 3.6686 26 1 13.1366 8.9691 4.3836 27 6 7.8735 3.3161 -1.2840 28 6 6.3953 3.5880 -0.9312 29 1 5.8067 4.1987 -1.6159 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.8929 3.1915 1.2490 36 1 0.4400 2.1638 1.2492 37 1 1.8932 1.6499 2.1393 38 1 1.8934 1.6498 -2.1391 39 1 0.4401 2.1637 -1.2493 40 1 1.8931 3.1915 -1.2490 41 1 3.7359 3.4497 -0.0001 42 1 8.0817 4.4188 1.8308 43 1 8.0284 2.6746 1.4286 44 1 9.7366 5.9738 1.3775 45 1 10.6667 4.4768 1.6262 46 1 15.1679 8.2486 1.1521 47 1 8.0711 2.2441 -1.2932 48 1 8.1208 3.7556 -2.2503 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737538645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:48 Heat of formation + Delta-G solvation = -70.335831 kcal Electronic energy + Delta-G solvation = -26590.102538 eV Core-core repulsion = 22771.010065 eV Total energy + Delta-G solvation = -3819.092473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.72228 -40.90470 -39.40472 -37.30718 -35.80226 -34.58795 -33.50265 -31.31652 -30.73313 -29.29637 -28.25723 -27.70828 -26.64183 -25.69107 -23.24510 -22.15267 -21.28206 -20.83451 -19.93434 -19.57735 -18.30458 -17.93193 -17.56102 -16.88523 -16.71659 -16.64343 -16.20753 -15.97245 -15.67373 -15.29655 -15.08667 -14.87324 -14.66637 -14.38223 -13.99136 -13.79771 -13.72313 -13.53598 -13.45327 -13.33566 -13.13893 -12.95129 -12.86526 -12.77088 -12.72554 -12.61255 -12.47608 -12.14576 -11.96032 -11.76054 -11.55301 -11.53519 -11.35479 -11.13016 -10.93072 -10.67861 -10.29183 -9.89109 -9.86155 -8.68691 -8.34591 -6.13713 1.20978 1.43155 1.44247 1.49246 1.51542 1.54299 1.85578 2.07404 2.27186 2.53390 2.99493 3.21859 3.44633 3.49719 3.59992 3.64687 3.74586 3.84207 3.90586 4.03296 4.11604 4.20374 4.25840 4.38903 4.44861 4.46057 4.56476 4.63496 4.68108 4.70224 4.73222 4.77684 4.91594 4.95017 4.96581 5.02017 5.10835 5.11922 5.13860 5.14504 5.26526 5.41168 5.41610 5.43347 5.55546 6.19307 6.32235 6.46023 7.06216 7.07477 7.17739 8.74437 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027951 B = 0.001758 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.499133 B =15920.773563 C =16495.552430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.102 4.102 3 C -0.075 4.075 4 C -0.142 4.142 5 C -0.142 4.142 6 C 0.524 3.476 7 O -0.580 6.580 8 N -0.685 5.685 9 C 0.124 3.876 10 H 0.123 0.877 11 C -0.164 4.164 12 H 0.149 0.851 13 C 0.124 3.876 14 N -0.627 5.627 15 C 0.553 3.447 16 O -0.569 6.569 17 C -0.119 4.119 18 S -0.152 6.152 19 C -0.547 4.547 20 H 0.084 0.916 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.261 1.261 27 C 0.131 3.869 28 C -0.175 4.175 29 H 0.138 0.862 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.418 0.582 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.271 0.729 47 H 0.080 0.920 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.881 -11.335 1.854 35.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.140 4.140 3 C -0.078 4.078 4 C -0.199 4.199 5 C -0.200 4.200 6 C 0.312 3.688 7 O -0.459 6.459 8 N -0.335 5.335 9 C 0.016 3.984 10 H 0.141 0.859 11 C -0.184 4.184 12 H 0.166 0.834 13 C 0.003 3.997 14 N -0.363 5.363 15 C 0.342 3.658 16 O -0.448 6.448 17 C -0.270 4.270 18 S 0.075 5.925 19 C -0.695 4.695 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.185 1.185 27 C 0.008 3.992 28 C -0.196 4.196 29 H 0.156 0.844 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.256 0.744 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.080 0.920 47 H 0.098 0.902 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -32.450 -11.731 0.166 34.506 hybrid contribution 0.281 0.503 1.622 1.722 sum -32.168 -11.228 1.788 34.118 Atomic orbital electron populations 1.21896 0.93474 1.02349 1.03095 1.21351 0.97126 0.93780 1.01748 1.20844 0.88487 0.98729 0.99789 1.21961 1.03306 1.00255 0.94406 1.21961 1.03326 1.00218 0.94460 1.21253 0.91084 0.82782 0.73652 1.90700 1.71341 1.32999 1.50861 1.45210 1.04669 1.09507 1.74144 1.21491 0.80810 0.95622 1.00439 0.85936 1.24089 0.96667 1.01520 0.96164 0.83365 1.22743 0.87394 1.03406 0.86145 1.50064 1.22676 1.52612 1.10947 1.19746 0.79353 0.77094 0.89599 1.90693 1.63060 1.60708 1.30301 1.23300 1.01221 1.03515 0.98971 1.85618 1.24134 1.67407 1.15334 1.23167 1.12664 1.39936 0.93708 0.89777 1.26140 0.95300 0.95289 1.02362 1.70182 1.15410 1.37930 1.31239 0.84996 0.77705 0.78566 0.76679 1.18675 1.20419 1.18509 1.21714 0.88578 0.97517 0.91387 1.24100 0.95859 1.05359 0.94238 0.84425 0.91262 0.92596 0.91161 0.93103 0.92960 0.90572 0.89220 0.92933 0.93116 0.89173 0.90647 0.74415 0.87894 0.88468 0.87203 0.87504 0.91978 0.90221 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.21 71.98 0.66 -0.36 16 2 C -0.10 -1.24 4.28 30.59 0.13 -1.11 16 3 C -0.08 -0.71 0.64 -52.93 -0.03 -0.75 16 4 C -0.14 -0.75 8.02 71.98 0.58 -0.18 16 5 C -0.14 -0.81 8.02 71.98 0.58 -0.24 16 6 C 0.52 8.32 6.48 87.66 0.57 8.89 16 7 O -0.58 -14.81 15.55 -3.04 -0.05 -14.86 16 8 N -0.69 -7.62 5.35 -442.53 -2.37 -9.99 16 9 C 0.12 1.78 5.97 44.99 0.27 2.05 16 10 H 0.12 2.29 7.40 -2.38 -0.02 2.27 16 11 C -0.16 -2.17 6.96 -9.93 -0.07 -2.24 16 12 H 0.15 1.32 8.14 -2.39 -0.02 1.31 16 13 C 0.12 2.23 6.96 85.82 0.60 2.83 16 14 N -0.63 -17.40 3.39 -798.33 -2.70 -20.10 16 15 C 0.55 21.61 7.94 87.66 0.70 22.31 16 16 O -0.57 -27.73 16.13 -3.01 -0.05 -27.78 16 17 C -0.12 -4.83 5.17 71.24 0.37 -4.46 16 18 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 19 C -0.55 -31.26 9.50 67.95 0.65 -30.61 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.79 5.49 84.86 0.47 1.26 16 22 N -0.91 -56.16 13.22 21.65 0.29 -55.87 16 23 Si 1.00 43.39 29.55 68.60 2.03 45.41 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 27 C 0.13 3.04 6.86 86.53 0.59 3.63 16 28 C -0.17 -2.74 7.05 -9.94 -0.07 -2.81 16 29 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 0.33 6.43 -2.39 -0.02 0.32 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.07 0.32 6.43 -2.39 -0.02 0.31 16 33 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 34 H 0.05 0.80 8.10 -2.38 -0.02 0.78 16 35 H 0.08 0.17 7.57 -2.39 -0.02 0.15 16 36 H 0.09 0.22 6.43 -2.39 -0.02 0.20 16 37 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.09 0.25 6.43 -2.39 -0.02 0.23 16 40 H 0.07 0.21 7.56 -2.39 -0.02 0.19 16 41 H 0.42 2.09 7.66 -92.71 -0.71 1.38 16 42 H 0.10 1.70 7.41 -2.39 -0.02 1.68 16 43 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.11 3.97 7.98 -2.40 -0.02 3.95 16 45 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 46 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 47 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 48 H 0.07 1.98 7.88 -2.39 -0.02 1.96 16 Total: -1.00 -83.27 400.26 2.22 -81.05 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.25 Total: 13.64 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 5.98 Total: -1.79 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -4.78 Total: -85.96 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -0.10 Total: -42.64 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -83.27 2.22 -81.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737538645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.717 kcal (2) G-P(sol) polarization free energy of solvation -83.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds