Wall clock time and date at job start Sat Apr 11 2020 06:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47202 * 2 1 4 4 C 1.32991 * 120.00032 * 122.58968 * 3 2 1 5 5 C 1.50709 * 120.00081 * 185.90098 * 4 3 2 6 6 C 1.47104 * 120.00138 * 5.88956 * 4 3 2 7 7 O 1.21609 * 120.00046 * 261.00774 * 6 4 3 8 8 N 1.34783 * 119.99397 * 81.00718 * 6 4 3 9 9 C 1.47024 * 125.64811 * 354.93418 * 8 6 4 10 10 C 1.54324 * 107.26676 * 178.97478 * 9 8 6 11 11 C 1.55161 * 102.94301 * 337.80591 * 10 9 8 12 12 H 1.08997 * 111.03447 * 277.41049 * 11 10 9 13 13 C 1.52997 * 111.00284 * 153.57836 * 11 10 9 14 14 N 1.46500 * 109.47413 * 72.80237 * 13 11 10 15 15 C 1.34779 * 120.00084 * 179.72501 * 14 13 11 16 16 O 1.21278 * 120.00058 * 0.27358 * 15 14 13 17 17 C 1.50697 * 119.99890 * 180.27570 * 15 14 13 18 18 S 1.81000 * 109.47143 * 179.97438 * 17 15 14 19 19 C 1.76201 * 100.00039 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00164 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00214 * 179.97438 * 19 18 17 22 22 N 1.31637 * 119.99814 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00260 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47212 * 60.00372 * 23 21 19 25 25 H 1.48497 * 109.47095 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47058 * 300.00058 * 23 21 19 27 27 C 1.47418 * 125.64587 * 174.97135 * 8 6 4 28 28 H 1.09002 * 109.46930 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46936 * 299.99662 * 1 2 3 30 30 H 1.08993 * 109.47368 * 59.99448 * 1 2 3 31 31 H 1.09004 * 109.46936 * 240.00337 * 2 1 3 32 32 H 1.08993 * 109.47368 * 120.00552 * 2 1 3 33 33 H 1.08005 * 120.00364 * 302.58573 * 3 2 1 34 34 H 1.09002 * 109.46302 * 265.05607 * 5 4 3 35 35 H 1.08998 * 109.47217 * 25.05367 * 5 4 3 36 36 H 1.08997 * 109.46934 * 145.05992 * 5 4 3 37 37 H 1.08996 * 109.87952 * 298.38962 * 9 8 6 38 38 H 1.08995 * 109.88233 * 59.40428 * 9 8 6 39 39 H 1.08998 * 110.71693 * 219.44293 * 10 9 8 40 40 H 1.09000 * 110.71864 * 96.16857 * 10 9 8 41 41 H 1.09003 * 109.47236 * 312.80301 * 13 11 10 42 42 H 1.08999 * 109.47230 * 192.80022 * 13 11 10 43 43 H 0.97005 * 120.00126 * 359.97438 * 14 13 11 44 44 H 1.09002 * 109.47355 * 300.00273 * 17 15 14 45 45 H 1.09004 * 109.47349 * 59.99990 * 17 15 14 46 46 H 0.96996 * 120.00172 * 179.97438 * 22 21 19 47 47 H 1.08999 * 110.36740 * 85.25370 * 27 8 6 48 48 H 1.09006 * 110.46460 * 322.98106 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8389 1.8409 0.9704 5 6 3.2344 3.2932 1.0456 6 6 3.3447 0.8881 1.9705 7 8 2.8107 0.8098 3.0603 8 7 4.4000 0.1020 1.6790 9 6 5.0709 0.0177 0.3734 10 6 6.2338 -0.9861 0.5200 11 6 6.5034 -0.9850 2.0480 12 1 7.1383 -0.1461 2.3326 13 6 7.1188 -2.3118 2.4972 14 7 8.5096 -2.3838 2.0425 15 6 9.2572 -3.4678 2.3297 16 8 8.7771 -4.3858 2.9603 17 6 10.6897 -3.5392 1.8673 18 16 11.4200 -5.1056 2.4050 19 6 13.0452 -4.9269 1.7482 20 1 13.3124 -4.0333 1.2037 21 6 13.9825 -5.9341 1.9316 22 7 13.6570 -7.0230 2.5957 23 14 15.7053 -5.7450 1.2347 24 1 16.3491 -4.5442 1.8251 25 1 16.5077 -6.9501 1.5646 26 1 15.6284 -5.5907 -0.2403 27 6 5.0722 -0.8162 2.6161 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.7375 2.0979 -0.7881 34 1 4.1911 3.4356 0.5429 35 1 2.4735 3.9027 0.5582 36 1 3.3249 3.5915 2.0900 37 1 4.3690 -0.3358 -0.3818 38 1 5.4569 0.9971 0.0911 39 1 7.1116 -0.6418 -0.0268 40 1 5.9322 -1.9777 0.1823 41 1 6.5530 -3.1386 2.0679 42 1 7.0884 -2.3766 3.5848 43 1 8.8935 -1.6497 1.5378 44 1 10.7240 -3.4763 0.7796 45 1 11.2520 -2.7101 2.2970 46 1 14.3119 -7.7271 2.7236 47 1 4.5579 -1.7769 2.6405 48 1 5.1095 -0.3813 3.6150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737592376.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:07 Heat of formation + Delta-G solvation = -71.444848 kcal Electronic energy + Delta-G solvation = -26334.887533 eV Core-core repulsion = 22515.746969 eV Total energy + Delta-G solvation = -3819.140563 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.72673 -39.29702 -38.05131 -36.19373 -34.78356 -32.76009 -32.44223 -31.92979 -30.10062 -29.12596 -27.50807 -26.05467 -25.43665 -23.97760 -22.87485 -21.84700 -20.94637 -20.27314 -18.79108 -17.87141 -17.03375 -16.87580 -16.32685 -16.15231 -15.62980 -15.37662 -15.21510 -14.81706 -14.39269 -14.25714 -13.96565 -13.93383 -13.76472 -13.56766 -13.42702 -13.22457 -13.15038 -12.97398 -12.68277 -12.58370 -12.52728 -12.36330 -11.89391 -11.66796 -11.53838 -11.44946 -11.28289 -11.14752 -11.06107 -11.05054 -10.78349 -10.27442 -9.84182 -9.45316 -9.40794 -9.08093 -9.06812 -8.93679 -8.25787 -6.51756 -6.22861 -3.93805 1.27524 2.20570 2.60923 3.00984 3.06563 3.22237 3.26357 3.29372 3.64254 3.94034 4.07301 4.19108 4.21448 4.35727 4.42721 4.57724 4.75000 4.83279 4.86759 4.90619 4.92119 4.97402 5.10295 5.12154 5.15587 5.17772 5.18768 5.28625 5.36571 5.42733 5.44659 5.48948 5.54263 5.60171 5.61676 5.69499 5.73830 5.81044 5.86313 5.89883 5.95878 6.10290 6.10999 6.54762 7.06431 7.57656 7.65196 7.74086 8.33466 8.57419 9.22228 10.84477 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028094 B = 0.001637 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.415134 B =17100.884848 C =17272.842189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.112 4.112 4 C -0.163 4.163 5 C -0.104 4.104 6 C 0.575 3.425 7 O -0.536 6.536 8 N -0.614 5.614 9 C 0.102 3.898 10 C -0.129 4.129 11 C -0.113 4.113 12 H 0.094 0.906 13 C 0.133 3.867 14 N -0.738 5.738 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.114 3.886 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.126 0.874 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.398 0.602 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.075 0.925 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.382 20.802 -8.959 31.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.131 4.131 4 C -0.166 4.166 5 C -0.161 4.161 6 C 0.364 3.636 7 O -0.412 6.412 8 N -0.348 5.348 9 C -0.020 4.020 10 C -0.167 4.167 11 C -0.132 4.132 12 H 0.112 0.888 13 C 0.008 3.992 14 N -0.393 5.393 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.009 4.009 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.144 0.856 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.231 0.769 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.498 19.079 -7.213 31.116 hybrid contribution 1.900 1.583 -1.518 2.901 sum -21.598 20.663 -8.730 31.139 Atomic orbital electron populations 1.21665 0.94232 1.02152 1.02164 1.20774 0.96978 0.93834 1.02746 1.23377 0.95875 0.97784 0.96039 1.21467 1.02134 0.96461 0.96532 1.20668 1.01925 0.90295 1.03194 1.18120 0.78599 0.79625 0.87255 1.90841 1.57077 1.69043 1.24278 1.48472 1.31367 1.41982 1.13024 1.22065 0.94658 1.00078 0.85243 1.22779 0.97903 1.00045 0.95927 1.22607 0.96083 0.98824 0.95690 0.88818 1.21133 0.82381 0.95513 1.00150 1.45947 1.12394 1.21580 1.59378 1.20309 0.87592 0.81376 0.78938 1.90712 1.73047 1.36807 1.38469 1.23529 0.94596 1.07850 1.04436 1.85416 1.10279 1.14798 1.72838 1.22826 0.97133 1.07288 1.41262 0.90975 1.24992 0.99133 0.94467 0.94963 1.70008 1.35275 1.06753 1.38216 0.86223 0.82161 0.77787 0.79323 1.19945 1.20800 1.19954 1.22164 0.90896 0.93952 0.93898 0.92180 0.92385 0.92390 0.90509 0.91465 0.85593 0.91089 0.90898 0.91173 0.91169 0.91167 0.89451 0.89776 0.91122 0.91109 0.76851 0.89223 0.89229 0.92109 0.90690 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.89 37.16 0.37 -0.48 16 2 C -0.11 -0.69 6.13 -27.89 -0.17 -0.86 16 3 C -0.11 -0.68 9.17 -36.13 -0.33 -1.01 16 4 C -0.16 -1.25 4.93 -102.84 -0.51 -1.75 16 5 C -0.10 -0.59 10.04 36.01 0.36 -0.23 16 6 C 0.57 6.01 5.27 -12.66 -0.07 5.94 16 7 O -0.54 -7.82 17.40 5.27 0.09 -7.73 16 8 N -0.61 -5.17 3.33 -171.92 -0.57 -5.74 16 9 C 0.10 0.59 6.47 -3.06 -0.02 0.57 16 10 C -0.13 -0.72 6.37 -24.89 -0.16 -0.88 16 11 C -0.11 -0.79 3.05 -88.47 -0.27 -1.06 16 12 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 13 C 0.13 1.35 5.13 -4.04 -0.02 1.33 16 14 N -0.74 -8.78 5.50 -60.30 -0.33 -9.11 16 15 C 0.53 9.44 7.85 -10.99 -0.09 9.36 16 16 O -0.52 -11.43 15.86 5.56 0.09 -11.34 16 17 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.11 9.50 30.94 0.29 -14.81 16 20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 23 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C 0.11 0.96 6.36 -2.54 -0.02 0.94 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.59 6.32 -51.93 -0.33 0.26 16 33 H 0.13 0.51 8.05 -52.48 -0.42 0.09 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.31 8.03 -51.93 -0.42 -0.11 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.52 7.91 -51.93 -0.41 0.11 16 41 H 0.07 0.77 7.97 -51.93 -0.41 0.36 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.40 3.50 8.47 -40.82 -0.35 3.16 16 44 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 45 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.07 0.64 8.04 -51.93 -0.42 0.23 16 48 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 LS Contribution 413.34 15.07 6.23 6.23 Total: -1.00 -36.64 413.34 -9.71 -46.34 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -8.21 Total: -2.01 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -0.50 Total: -3.73 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: -0.17 Total: -40.09 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.18 Total: -19.07 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.64 -9.71 -46.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737592376.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.101 kcal (2) G-P(sol) polarization free energy of solvation -36.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds