Wall clock time and date at job start Sat Apr 11 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47202 * 2 1 4 4 C 1.32991 * 120.00032 * 122.58968 * 3 2 1 5 5 C 1.50709 * 120.00081 * 185.90098 * 4 3 2 6 6 C 1.47104 * 120.00138 * 5.88956 * 4 3 2 7 7 O 1.21609 * 120.00046 * 261.00774 * 6 4 3 8 8 N 1.34783 * 119.99397 * 81.00718 * 6 4 3 9 9 C 1.47024 * 125.64811 * 354.93418 * 8 6 4 10 10 C 1.54324 * 107.26676 * 178.97478 * 9 8 6 11 11 C 1.55161 * 102.94301 * 337.80591 * 10 9 8 12 12 H 1.08997 * 111.03447 * 277.41049 * 11 10 9 13 13 C 1.52997 * 111.00284 * 153.57836 * 11 10 9 14 14 N 1.46500 * 109.47413 * 72.80237 * 13 11 10 15 15 C 1.34779 * 120.00084 * 179.72501 * 14 13 11 16 16 O 1.21278 * 120.00058 * 0.27358 * 15 14 13 17 17 C 1.50697 * 119.99890 * 180.27570 * 15 14 13 18 18 S 1.81000 * 109.47143 * 179.97438 * 17 15 14 19 19 C 1.76201 * 100.00039 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00164 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00214 * 179.97438 * 19 18 17 22 22 N 1.31637 * 119.99814 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00260 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47212 * 60.00372 * 23 21 19 25 25 H 1.48497 * 109.47095 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47058 * 300.00058 * 23 21 19 27 27 C 1.47418 * 125.64587 * 174.97135 * 8 6 4 28 28 H 1.09002 * 109.46930 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46936 * 299.99662 * 1 2 3 30 30 H 1.08993 * 109.47368 * 59.99448 * 1 2 3 31 31 H 1.09004 * 109.46936 * 240.00337 * 2 1 3 32 32 H 1.08993 * 109.47368 * 120.00552 * 2 1 3 33 33 H 1.08005 * 120.00364 * 302.58573 * 3 2 1 34 34 H 1.09002 * 109.46302 * 265.05607 * 5 4 3 35 35 H 1.08998 * 109.47217 * 25.05367 * 5 4 3 36 36 H 1.08997 * 109.46934 * 145.05992 * 5 4 3 37 37 H 1.08996 * 109.87952 * 298.38962 * 9 8 6 38 38 H 1.08995 * 109.88233 * 59.40428 * 9 8 6 39 39 H 1.08998 * 110.71693 * 219.44293 * 10 9 8 40 40 H 1.09000 * 110.71864 * 96.16857 * 10 9 8 41 41 H 1.09003 * 109.47236 * 312.80301 * 13 11 10 42 42 H 1.08999 * 109.47230 * 192.80022 * 13 11 10 43 43 H 0.97005 * 120.00126 * 359.97438 * 14 13 11 44 44 H 1.09002 * 109.47355 * 300.00273 * 17 15 14 45 45 H 1.09004 * 109.47349 * 59.99990 * 17 15 14 46 46 H 0.96996 * 120.00172 * 179.97438 * 22 21 19 47 47 H 1.08999 * 110.36740 * 85.25370 * 27 8 6 48 48 H 1.09006 * 110.46460 * 322.98106 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8389 1.8409 0.9704 5 6 3.2344 3.2932 1.0456 6 6 3.3447 0.8881 1.9705 7 8 2.8107 0.8098 3.0603 8 7 4.4000 0.1020 1.6790 9 6 5.0709 0.0177 0.3734 10 6 6.2338 -0.9861 0.5200 11 6 6.5034 -0.9850 2.0480 12 1 7.1383 -0.1461 2.3326 13 6 7.1188 -2.3118 2.4972 14 7 8.5096 -2.3838 2.0425 15 6 9.2572 -3.4678 2.3297 16 8 8.7771 -4.3858 2.9603 17 6 10.6897 -3.5392 1.8673 18 16 11.4200 -5.1056 2.4050 19 6 13.0452 -4.9269 1.7482 20 1 13.3124 -4.0333 1.2037 21 6 13.9825 -5.9341 1.9316 22 7 13.6570 -7.0230 2.5957 23 14 15.7053 -5.7450 1.2347 24 1 16.3491 -4.5442 1.8251 25 1 16.5077 -6.9501 1.5646 26 1 15.6284 -5.5907 -0.2403 27 6 5.0722 -0.8162 2.6161 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.7375 2.0979 -0.7881 34 1 4.1911 3.4356 0.5429 35 1 2.4735 3.9027 0.5582 36 1 3.3249 3.5915 2.0900 37 1 4.3690 -0.3358 -0.3818 38 1 5.4569 0.9971 0.0911 39 1 7.1116 -0.6418 -0.0268 40 1 5.9322 -1.9777 0.1823 41 1 6.5530 -3.1386 2.0679 42 1 7.0884 -2.3766 3.5848 43 1 8.8935 -1.6497 1.5378 44 1 10.7240 -3.4763 0.7796 45 1 11.2520 -2.7101 2.2970 46 1 14.3119 -7.7271 2.7236 47 1 4.5579 -1.7769 2.6405 48 1 5.1095 -0.3813 3.6150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737592376.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:02 Heat of formation + Delta-G solvation = -96.322980 kcal Electronic energy + Delta-G solvation = -26335.966329 eV Core-core repulsion = 22515.746969 eV Total energy + Delta-G solvation = -3820.219360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -41.44769 -40.57864 -38.87676 -36.80610 -35.88786 -34.56608 -33.35264 -32.78394 -31.03030 -30.18334 -27.98831 -27.68823 -26.81370 -24.68446 -23.38548 -22.45385 -21.81770 -21.42249 -19.81450 -19.39402 -17.92843 -17.72314 -17.56527 -16.91564 -16.86030 -16.66800 -16.46641 -16.01946 -15.67861 -15.15603 -14.85795 -14.69939 -14.51698 -14.42442 -14.31171 -14.18267 -13.99819 -13.81533 -13.69214 -13.41819 -13.25202 -13.15159 -13.05151 -12.91029 -12.84591 -12.63285 -12.30664 -12.04660 -11.97517 -11.92737 -11.73222 -11.71402 -11.11233 -11.07193 -10.92708 -10.25250 -10.11047 -9.91399 -9.76499 -8.64897 -8.32849 -6.10952 0.76683 1.28288 1.45230 1.45271 1.49340 1.58036 1.64036 1.95572 2.28163 2.33230 3.01292 3.28346 3.36684 3.47674 3.66360 3.76409 3.85726 4.03478 4.07378 4.23353 4.26115 4.29172 4.34900 4.35438 4.46845 4.49514 4.52567 4.54569 4.67397 4.68878 4.75062 4.76001 4.86019 4.93797 4.96602 5.03149 5.04787 5.15586 5.16387 5.24526 5.29744 5.43102 5.43428 5.44271 5.62322 6.21246 6.38922 6.53324 6.99659 7.08411 7.27509 8.76011 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028094 B = 0.001637 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.415134 B =17100.884848 C =17272.842189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C -0.096 4.096 4 C -0.183 4.183 5 C -0.100 4.100 6 C 0.569 3.431 7 O -0.592 6.592 8 N -0.612 5.612 9 C 0.101 3.899 10 C -0.123 4.123 11 C -0.095 4.095 12 H 0.109 0.891 13 C 0.134 3.866 14 N -0.707 5.707 15 C 0.534 3.466 16 O -0.568 6.568 17 C -0.129 4.129 18 S -0.156 6.156 19 C -0.546 4.546 20 H 0.085 0.915 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.261 1.261 27 C 0.109 3.891 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.037 0.963 33 H 0.156 0.844 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.418 0.582 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.271 0.729 47 H 0.067 0.933 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.737 23.563 -12.169 34.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C -0.114 4.114 4 C -0.185 4.185 5 C -0.156 4.156 6 C 0.360 3.640 7 O -0.473 6.473 8 N -0.344 5.344 9 C -0.021 4.021 10 C -0.161 4.161 11 C -0.114 4.114 12 H 0.127 0.873 13 C 0.010 3.990 14 N -0.362 5.362 15 C 0.319 3.681 16 O -0.447 6.447 17 C -0.280 4.280 18 S 0.071 5.929 19 C -0.694 4.694 20 H 0.103 0.897 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.187 1.187 25 H -0.206 1.206 26 H -0.186 1.186 27 C -0.014 4.014 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.056 0.944 33 H 0.174 0.826 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.256 0.744 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.848 21.900 -10.481 33.339 hybrid contribution 1.557 0.761 -0.530 1.812 sum -21.292 22.661 -11.010 32.986 Atomic orbital electron populations 1.21658 0.93785 1.02307 1.02344 1.20805 0.97376 0.94280 1.02122 1.23614 0.94131 0.97743 0.95918 1.21513 1.03701 0.96824 0.96509 1.20684 1.03389 0.89104 1.02470 1.18706 0.78396 0.79827 0.87088 1.90801 1.58958 1.70820 1.26763 1.48560 1.30788 1.41013 1.14035 1.22264 0.94688 1.01221 0.83904 1.22814 0.98781 1.00058 0.94439 1.22420 0.94853 0.97225 0.96927 0.87332 1.21185 0.81147 0.97216 0.99443 1.45612 1.12509 1.20222 1.57843 1.20065 0.87280 0.82099 0.78613 1.90705 1.73788 1.39094 1.41067 1.23369 0.95332 1.03552 1.05742 1.85626 1.11820 1.21191 1.74226 1.23183 0.97244 1.07823 1.41137 0.89737 1.26133 1.04028 0.93917 0.95124 1.70183 1.36926 1.07849 1.39874 0.85007 0.75997 0.78039 0.78979 1.18669 1.20583 1.18554 1.22129 0.91947 0.93662 0.93678 0.92153 0.93896 0.90429 0.88755 0.94375 0.82620 0.89533 0.89074 0.92983 0.90172 0.89228 0.87059 0.90146 0.91787 0.92427 0.74412 0.86855 0.87144 0.92056 0.91440 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.89 71.98 0.71 -0.81 16 2 C -0.11 -1.26 6.13 29.85 0.18 -1.08 16 3 C -0.10 -0.94 9.17 24.52 0.22 -0.72 16 4 C -0.18 -2.54 4.93 -18.70 -0.09 -2.64 16 5 C -0.10 -0.95 10.04 71.24 0.72 -0.23 16 6 C 0.57 11.99 5.27 86.57 0.46 12.45 16 7 O -0.59 -18.39 17.40 -4.06 -0.07 -18.46 16 8 N -0.61 -9.86 3.33 -816.08 -2.71 -12.57 16 9 C 0.10 0.88 6.47 86.73 0.56 1.44 16 10 C -0.12 -1.00 6.37 31.78 0.20 -0.80 16 11 C -0.09 -1.15 3.05 -9.40 -0.03 -1.18 16 12 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 13 C 0.13 2.59 5.13 86.38 0.44 3.03 16 14 N -0.71 -15.26 5.50 -463.07 -2.55 -17.81 16 15 C 0.53 18.47 7.85 87.66 0.69 19.16 16 16 O -0.57 -25.66 15.86 -3.02 -0.05 -25.71 16 17 C -0.13 -4.82 6.16 71.23 0.44 -4.38 16 18 S -0.16 -8.50 20.57 -56.49 -1.16 -9.67 16 19 C -0.55 -30.63 9.50 67.95 0.65 -29.98 16 20 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 21 C 0.01 0.71 5.49 84.86 0.47 1.18 16 22 N -0.91 -55.70 13.22 21.65 0.29 -55.41 16 23 Si 1.00 42.89 29.55 68.60 2.03 44.92 16 24 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 27 C 0.11 1.85 6.36 86.85 0.55 2.40 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.04 0.68 6.32 -2.39 -0.02 0.66 16 33 H 0.16 0.63 8.05 -2.91 -0.02 0.61 16 34 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.09 0.52 8.03 -2.39 -0.02 0.50 16 36 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 0.58 8.07 -2.39 -0.02 0.56 16 38 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.08 0.77 7.91 -2.39 -0.02 0.75 16 41 H 0.06 1.38 7.97 -2.39 -0.02 1.36 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.42 5.75 8.47 -92.70 -0.79 4.96 16 44 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 45 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 46 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 47 H 0.07 1.23 8.04 -2.39 -0.02 1.21 16 48 H 0.07 1.36 8.09 -2.38 -0.02 1.34 16 Total: -1.00 -84.80 413.34 2.09 -82.71 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.15 Total: 14.15 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 6.17 Total: -2.15 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -4.98 Total: -85.79 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -0.12 Total: -44.17 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.67 kcal Total: -84.80 2.09 -82.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737592376.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.612 kcal (2) G-P(sol) polarization free energy of solvation -84.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds