Wall clock time and date at job start Sat Apr 11 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99708 * 2 1 4 4 C 1.52990 * 109.47603 * 0.02562 * 3 2 1 5 5 C 1.53007 * 109.46976 * 240.00120 * 3 2 1 6 6 C 1.50700 * 109.46884 * 120.00625 * 3 2 1 7 7 O 1.21281 * 120.00094 * 359.97438 * 6 3 2 8 8 N 1.34781 * 119.99916 * 179.97438 * 6 3 2 9 9 C 1.46493 * 120.00084 * 179.97438 * 8 6 3 10 10 C 1.53005 * 109.47225 * 180.02562 * 9 8 6 11 11 H 1.08994 * 110.88434 * 308.88509 * 10 9 8 12 12 C 1.55159 * 111.00250 * 185.00165 * 10 9 8 13 13 C 1.54324 * 102.94134 * 206.38669 * 12 10 9 14 14 N 1.47020 * 107.39983 * 22.11770 * 13 12 10 15 15 C 1.34780 * 125.64983 * 181.10309 * 14 13 12 16 16 O 1.21276 * 120.00190 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99770 * 0.02562 * 15 14 13 18 18 S 1.80993 * 109.47192 * 180.02562 * 17 15 14 19 19 C 1.76201 * 100.00296 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99858 * 0.02562 * 19 18 17 21 21 C 1.38794 * 120.00411 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99992 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00055 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47290 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46975 * 120.00134 * 23 21 19 26 26 H 1.48504 * 109.46956 * 239.99838 * 23 21 19 27 27 C 1.47743 * 108.53125 * 1.18235 * 14 13 12 28 28 H 1.08002 * 119.99683 * 179.97438 * 1 2 3 29 29 H 1.07993 * 120.00309 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99761 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47530 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47374 * 299.99936 * 4 3 2 33 33 H 1.09006 * 109.47044 * 59.99647 * 4 3 2 34 34 H 1.09002 * 109.47112 * 300.00362 * 5 3 2 35 35 H 1.08999 * 109.47074 * 60.00194 * 5 3 2 36 36 H 1.09003 * 109.46692 * 180.02562 * 5 3 2 37 37 H 0.96997 * 119.99947 * 0.02562 * 8 6 3 38 38 H 1.09004 * 109.47044 * 60.00700 * 9 8 6 39 39 H 1.09000 * 109.47458 * 300.00293 * 9 8 6 40 40 H 1.09004 * 110.72010 * 88.02459 * 12 10 9 41 41 H 1.08999 * 110.72303 * 324.75069 * 12 10 9 42 42 H 1.09002 * 109.88322 * 141.61300 * 13 12 10 43 43 H 1.09000 * 109.88025 * 262.62465 * 13 12 10 44 44 H 1.08992 * 109.47408 * 300.00360 * 17 15 14 45 45 H 1.09005 * 109.47188 * 60.00318 * 17 15 14 46 46 H 0.97002 * 120.00459 * 180.02562 * 22 21 19 47 47 H 1.09003 * 110.29227 * 216.94505 * 27 14 13 48 48 H 1.08996 * 110.53057 * 94.67717 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9430 1.3862 -1.2493 6 6 2.9299 1.3849 1.2304 7 8 2.9348 0.4720 2.0289 8 7 3.6995 2.4706 1.4434 9 6 4.5414 2.5485 2.6398 10 6 5.3064 3.8735 2.6398 11 1 5.8187 4.0264 1.6899 12 6 6.3037 3.9398 3.8265 13 6 6.4408 5.4562 4.0785 14 7 5.2456 6.1046 3.5192 15 6 4.9978 7.4294 3.5197 16 8 3.9739 7.8550 3.0284 17 6 5.9930 8.3819 4.1308 18 16 5.3782 10.0773 3.9775 19 6 6.6984 10.9526 4.7492 20 1 7.5494 10.4131 5.1381 21 6 6.6452 12.3353 4.8564 22 7 5.6088 12.9930 4.3811 23 14 8.0452 13.2633 5.6739 24 1 9.0837 12.3000 6.1200 25 1 8.6390 14.2183 4.7041 26 1 7.5255 14.0092 6.8482 27 6 4.3633 5.0601 2.9594 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.6143 3.4120 0.0002 32 1 0.4423 2.4105 -0.8891 33 1 0.4429 2.4100 0.8909 34 1 3.6514 0.5577 -1.2494 35 1 2.3164 1.3284 -2.1393 36 1 3.4883 2.3300 -1.2490 37 1 3.6953 3.2009 0.8050 38 1 5.2495 1.7197 2.6403 39 1 3.9145 2.4913 3.5296 40 1 7.2644 3.5069 3.5477 41 1 5.8937 3.4388 4.7034 42 1 6.5009 5.6501 5.1494 43 1 7.3344 5.8351 3.5825 44 1 6.1286 8.1389 5.1846 45 1 6.9473 8.2928 3.6117 46 1 5.5717 13.9594 4.4557 47 1 3.8832 5.4189 2.0490 48 1 3.6125 4.7616 3.6910 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737593210.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:37 Heat of formation + Delta-G solvation = -60.557390 kcal Electronic energy + Delta-G solvation = -26689.224683 eV Core-core repulsion = 22870.556235 eV Total energy + Delta-G solvation = -3818.668448 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.67681 -39.81373 -37.66200 -36.65818 -35.12939 -32.45612 -32.32653 -31.09010 -29.70253 -28.98273 -27.86783 -26.05624 -25.44380 -24.26228 -23.06823 -21.23199 -20.93446 -19.42155 -18.86201 -17.74420 -17.42915 -16.82298 -16.54476 -16.35356 -15.68815 -15.26329 -15.15330 -14.82689 -14.59220 -14.56166 -14.12126 -13.93529 -13.78588 -13.40815 -13.07397 -12.81596 -12.78456 -12.67740 -12.58966 -12.48443 -12.33314 -12.21477 -11.84959 -11.72334 -11.59775 -11.32798 -11.13684 -11.09503 -11.06399 -11.03813 -10.77679 -10.13905 -9.83132 -9.69801 -9.48006 -9.40971 -9.09650 -8.56971 -8.25951 -6.53028 -6.24078 -3.94918 1.87497 2.32613 2.84210 2.88572 3.01286 3.19815 3.24211 3.29396 3.57718 4.08953 4.14161 4.18073 4.20940 4.30921 4.41164 4.49806 4.62731 4.87999 4.91718 4.98805 5.02477 5.06459 5.08646 5.11269 5.22790 5.27288 5.28606 5.31639 5.39203 5.47140 5.51098 5.55278 5.58568 5.64945 5.66766 5.70943 5.75451 5.85729 5.90644 6.06488 6.10864 6.25200 6.34239 6.38182 7.11865 7.57420 7.61266 7.87887 8.33115 8.50281 9.21372 10.83428 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024895 B = 0.001849 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.445819 B =15135.781742 C =15882.244974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 C -0.056 4.056 4 C -0.146 4.146 5 C -0.137 4.137 6 C 0.527 3.473 7 O -0.536 6.536 8 N -0.729 5.729 9 C 0.132 3.868 10 C -0.117 4.117 11 H 0.093 0.907 12 C -0.121 4.121 13 C 0.101 3.899 14 N -0.628 5.628 15 C 0.549 3.451 16 O -0.516 6.516 17 C -0.147 4.147 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.113 3.887 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.402 0.598 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.077 0.923 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 -26.325 -8.818 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.144 4.144 3 C -0.059 4.059 4 C -0.203 4.203 5 C -0.195 4.195 6 C 0.313 3.687 7 O -0.412 6.412 8 N -0.381 5.381 9 C 0.008 3.992 10 C -0.136 4.136 11 H 0.112 0.888 12 C -0.159 4.159 13 C -0.022 4.022 14 N -0.365 5.365 15 C 0.338 3.662 16 O -0.390 6.390 17 C -0.297 4.297 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.010 4.010 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.237 0.763 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.095 0.905 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.205 -26.063 -8.972 27.883 hybrid contribution 2.167 0.457 0.886 2.386 sum -2.037 -25.606 -8.085 26.929 Atomic orbital electron populations 1.23996 0.95894 1.02364 1.00632 1.22473 0.95628 0.96494 0.99793 1.19916 0.95764 0.96177 0.94083 1.21979 0.98850 0.96242 1.03277 1.21824 0.99258 1.02578 0.95811 1.20441 0.79538 0.81704 0.87049 1.90705 1.65778 1.37846 1.46874 1.46036 1.45201 1.21188 1.25715 1.21304 0.93368 0.96466 0.88066 1.22649 0.96832 0.93774 1.00377 0.88849 1.22621 0.99800 0.95491 0.98004 1.21990 0.88753 0.92102 0.99357 1.48568 1.21721 1.05407 1.60837 1.20040 0.87257 0.80268 0.78679 1.90708 1.27307 1.75982 1.44964 1.23508 1.00893 1.02243 1.03081 1.85398 1.29486 0.90515 1.78071 1.22897 1.06836 0.94243 1.44315 0.90866 1.24996 0.96691 0.96567 0.95345 1.70026 1.28593 1.08368 1.43271 0.86111 0.80990 0.79414 0.78944 1.19612 1.20546 1.20545 1.22253 0.92826 0.86668 0.99272 0.88204 0.87800 0.86898 0.91606 0.90834 0.91550 0.91855 0.91040 0.91731 0.76311 0.90783 0.90894 0.89534 0.90010 0.91074 0.91123 0.89284 0.89289 0.92214 0.90499 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.33 13.70 29.01 0.40 -0.94 16 2 C -0.13 -0.99 8.00 -36.03 -0.29 -1.28 16 3 C -0.06 -0.40 0.84 -156.82 -0.13 -0.53 16 4 C -0.15 -0.89 7.02 37.15 0.26 -0.63 16 5 C -0.14 -0.72 8.35 37.16 0.31 -0.41 16 6 C 0.53 4.96 6.47 -10.98 -0.07 4.89 16 7 O -0.54 -7.15 16.03 5.56 0.09 -7.06 16 8 N -0.73 -5.35 5.29 -60.29 -0.32 -5.67 16 9 C 0.13 0.97 5.13 -4.04 -0.02 0.95 16 10 C -0.12 -0.84 3.05 -88.47 -0.27 -1.11 16 11 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 12 C -0.12 -0.81 6.42 -24.90 -0.16 -0.97 16 13 C 0.10 1.00 6.48 -3.06 -0.02 0.98 16 14 N -0.63 -8.60 3.34 -170.26 -0.57 -9.17 16 15 C 0.55 10.39 7.87 -10.98 -0.09 10.31 16 16 O -0.52 -11.76 16.13 5.56 0.09 -11.67 16 17 C -0.15 -2.98 5.35 36.01 0.19 -2.78 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.53 -15.15 9.50 30.94 0.29 -14.86 16 20 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 23 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.11 1.22 6.35 -2.35 -0.01 1.20 16 28 H 0.10 0.60 8.06 -52.49 -0.42 0.17 16 29 H 0.10 0.64 5.69 -52.49 -0.30 0.34 16 30 H 0.11 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.06 0.35 7.57 -51.93 -0.39 -0.04 16 32 H 0.07 0.37 7.50 -51.93 -0.39 -0.02 16 33 H 0.07 0.46 7.50 -51.93 -0.39 0.07 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.27 7.56 -51.93 -0.39 -0.12 16 37 H 0.40 2.26 7.31 -40.82 -0.30 1.96 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.62 7.96 -51.93 -0.41 0.21 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.51 8.04 -51.93 -0.42 0.09 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 45 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 46 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 48 H 0.07 0.74 7.91 -51.93 -0.41 0.33 16 LS Contribution 406.06 15.07 6.12 6.12 Total: -1.00 -36.56 406.06 -8.81 -45.37 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -8.01 Total: -1.81 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 0.30 Total: -3.19 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: -0.15 Total: -40.13 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.18 Total: -18.73 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.56 -8.81 -45.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737593210.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.185 kcal (2) G-P(sol) polarization free energy of solvation -36.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds